IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1438	 32.42	0	1350998..1351543	+	181	159905834	-	MmarC6_1451	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
1439	 36.34	0	1351640..1353202	+	520	159905835	-	MmarC6_1452	-	alpha-glucan phosphorylase
1440	 32.79	0	1353329..1355338	+	669	159905836	-	MmarC6_1453	-	helicase c2
1441	 37.26	0	1355427..1356674	+	415	159905837	-	MmarC6_1454	-	LOR/SDH bifunctional protein
1442	 30.00	-1	1356692..1357351	+	219	159905838	-	MmarC6_1455	-	hypothetical protein
1443	 33.33	0	1357385..1358500	+	371	159905839	-	MmarC6_1456	-	histidinol-phosphate aminotransferase
1444	 33.67	0	1358648..1360126	+	492	159905840	-	MmarC6_1457	-	cobyric acid synthase
1445	 28.76	-1	1360228..1360905	+	225	159905841	-	MmarC6_1458	-	hypothetical protein
1446	 40.20	+1	1360920..1361312	-	130	159905842	-	MmarC6_1459	-	hypothetical protein
1447	 41.31	+1	1361350..1362528	-	392	159905843	-	MmarC6_1460	-	acetyl-CoA acetyltransferase
1448	 40.67	+1	1362547..1363596	-	349	159905844	-	MmarC6_1461	-	hypothetical protein
1449	 38.55	+1	1363658..1364347	-	229	159905845	-	MmarC6_1462	-	XRE family transcriptional regulator
1450	 28.45	-1	1364478..1365542	-	354	159905846	-	MmarC6_1463	-	hypothetical protein
1451	 39.01	+1	1365579..1366811	-	410	159905847	-	MmarC6_1464	-	translation initiation factor IF-2 subunit gamma
1452	 38.93	+1	1366972..1367346	-	124	159905848	-	MmarC6_1465	-	30S ribosomal protein S6e
1453	 39.82	+1	1367557..1368897	-	446	159905849	-	MmarC6_1466	-	glutamine synthetase, type I
1454	 34.81	0	1369066..1370355	+	429	159905850	-	MmarC6_1467	-	3-phosphoshikimate 1-carboxyvinyltransferase
1455	 30.20	0	1370421..1371440	+	339	159905851	-	MmarC6_1468	-	peptidase M24
1456	 29.54	-1	1371575..1372339	-	254	159905852	-	MmarC6_1469	-	hypothetical protein
1457	 32.79	0	1372422..1373519	+	365	159905853	-	MmarC6_1470	-	cobalt-precorrin-6A synthase
1458	 31.25	0	1373532..1373915	+	127	159905854	-	MmarC6_1471	-	hypothetical protein
1459	 32.97	0	1373923..1374474	+	183	159905855	-	MmarC6_1472	-	nuclease
1460	 36.61	0	1374732..1376042	-	436	159905856	-	MmarC6_1473	-	diaminopimelate decarboxylase
1461	 31.58	0	1376198..1377052	-	284	159905857	-	MmarC6_1474	-	phosphate uptake regulator, PhoU
1462	 34.38	0	1377158..1377922	-	254	159905858	-	MmarC6_1475	-	ABC transporter related
1463	 34.51	0	1377957..1378718	-	253	159905859	-	MmarC6_1476	-	binding-protein-dependent transport systems inner membrane component
1464	 30.62	0	1378886..1379437	-	183	159905860	-	MmarC6_1477	-	hypothetical protein
1465	 30.05	-1	1379516..1379881	-	121	159905861	-	MmarC6_1478	-	hypothetical protein
1466	 41.41	+1	1379998..1382151	-	717	159905862	-	MmarC6_1479	-	triple helix repeat-containing collagen
1467	 40.92	+1	1382210..1386730	-	1506	159905863	-	MmarC6_1480	-	hypothetical protein
1468	 29.84	-1	1387365..1388480	-	371	159905864	-	MmarC6_1481	-	radical SAM domain-containing protein
1469	 38.07	+1	1388581..1389552	-	323	159905865	-	MmarC6_1482	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
1470	 37.97	+1	1389743..1390195	+	150	159905866	-	MmarC6_1483	-	peptidylprolyl isomerase FKBP-type
1471	 36.94	0	1390273..1390992	+	239	159905867	-	MmarC6_1484	-	ribose 5-phosphate isomerase
1472	 36.96	0	1391138..1391413	+	91	159905868	-	MmarC6_1485	-	hypothetical protein
1473	 28.97	-1	1391445..1392017	-	190	159905869	-	MmarC6_1486	-	class II aldolase/adducin family protein
1474	 35.11	0	1392058..1394139	-	693	159905870	-	MmarC6_1487	-	peptidase S16, Lon-like protease
1475	 29.26	-1	1394153..1394692	-	179	159905871	-	MmarC6_1488	-	hydrogenase maturation protease HycI
1476	 26.70	-1	1394809..1395336	+	175	159905872	-	MmarC6_1489	-	GCN5-related N-acetyltransferase
1477	 32.81	0	1395337..1396098	-	253	159905873	-	MmarC6_1490	-	ABC transporter related
1478	 38.49	+1	1396116..1397162	-	348	159905874	-	MmarC6_1491	-	transport system permease protein
1479	 37.28	0	1397266..1398354	-	362	159905875	-	MmarC6_1492	-	periplasmic binding protein
1480	 35.14	0	1398550..1399710	-	386	159905876	-	MmarC6_1493	-	periplasmic binding protein
1481	 36.98	0	1399789..1400913	-	374	159905877	-	MmarC6_1494	-	periplasmic binding protein
1482	 30.64	0	1401064..1402212	-	382	159905878	-	MmarC6_1495	-	hypothetical protein
1483	 37.61	0	1402291..1402944	-	217	159905879	-	MmarC6_1496	-	peroxiredoxin
1484	 39.51	+1	1403169..1403978	+	269	159905880	-	MmarC6_1497	-	zinc/iron permease
1485	 36.78	0	1404100..1404651	+	183	159905881	-	MmarC6_1498	-	DNA protection protein DPS
1486	 35.96	0	1404884..1405492	+	202	159905882	-	MmarC6_1499	-	FMN-binding protein
1487	 32.36	0	1405551..1406165	-	204	159905883	-	MmarC6_1500	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1488	 33.19	0	1406177..1406869	-	230	159905884	-	MmarC6_1501	-	glycosyl transferase family protein
1489	 37.33	0	1407014..1408240	-	408	159905885	-	MmarC6_1502	-	SufBD protein
1490	 37.08	0	1408210..1408956	-	248	159905886	-	MmarC6_1503	-	ABC transporter related
1491	 34.23	0	1408957..1409511	-	184	159905887	-	MmarC6_1504	-	archaeoflavoprotein AfpA
1492	 35.35	0	1409514..1410107	-	197	159905888	-	MmarC6_1505	-	NADPH-dependent FMN reductase
1493	 33.61	0	1410272..1412443	-	723	159905889	-	MmarC6_1506	-	heavy metal translocating P-type ATPase
1494	 25.93	-2	1412462..1412677	-	71	159905890	-	MmarC6_1507	-	heavy metal transport/detoxification protein
1495	 31.11	0	1412805..1413119	-	104	159905891	-	MmarC6_1508	-	CutA1 divalent ion tolerance protein
1496	 33.68	0	1413137..1414300	-	387	159905892	-	MmarC6_1509	-	beta-lactamase domain-containing protein
1497	 32.76	0	1414329..1414679	-	116	159905893	-	MmarC6_1510	-	hypothetical protein
1498	 37.04	0	1414713..1414901	-	62	159905894	-	MmarC6_1511	-	hypothetical protein
1499	 35.23	0	1414912..1415439	-	175	159905895	-	MmarC6_1512	-	Ferritin Dps family protein
1500	 34.46	0	1415463..1415729	-	88	159905896	-	MmarC6_1513	-	hypothetical protein
1501	 33.61	0	1415751..1416107	-	118	159905897	-	MmarC6_1514	-	desulfoferrodoxin ferrous iron-binding region
1502	 33.97	0	1416120..1416434	-	104	159905898	-	MmarC6_1515	-	carboxymuconolactone decarboxylase
1503	 38.43	+1	1416475..1417377	-	300	159905899	-	MmarC6_1516	-	CoB--CoM heterodisulfide reductase, subunit B
1504	 36.96	0	1417390..1417968	-	192	159905900	-	MmarC6_1517	-	CoB--CoM heterodisulfide reductase, subunit C
1505	 38.21	+1	1418203..1419330	+	375	159905901	-	MmarC6_1518	-	NADH-ubiquinone oxidoreductase chain 49kDa
1506	 31.96	0	1419373..1419735	+	120	159905902	-	MmarC6_1519	-	CBS domain-containing protein
1507	 39.45	+1	1419796..1421070	-	424	159905903	-	MmarC6_1520	-	homoaconitate hydratase family protein
1508	 33.33	0	1421202..1421420	+	72	159905904	-	MmarC6_1521	-	like-Sm ribonucleoprotein core
1509	 35.90	0	1421498..1421692	+	64	159905905	-	MmarC6_1522	-	50S ribosomal protein L37e
1510	 35.29	0	1421865..1423244	+	459	159905906	-	MmarC6_1523	-	amidophosphoribosyltransferase
1511	 35.99	0	1423292..1424080	-	262	159905907	-	MmarC6_1524	-	cell division ATPase MinD
1512	 30.93	0	1424232..1424981	+	249	159905908	-	MmarC6_1525	-	bacitracin resistance protein BacA
1513	 29.82	-1	1425044..1425754	-	236	159905909	-	MmarC6_1526	-	metallophosphoesterase
1514	 35.50	0	1425757..1428381	-	874	159905910	-	MmarC6_1527	-	ATP-dependent helicase
1515	 32.58	0	1428563..1428829	-	88	159905911	-	MmarC6_1528	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1516	 33.97	0	1429004..1429627	-	207	159905912	-	MmarC6_1529	-	thiamine-phosphate pyrophosphorylase
1517	 38.08	+1	1429617..1430417	-	266	159905913	-	MmarC6_1530	-	hydroxyethylthiazole kinase
1518	 34.52	0	1430627..1431049	+	140	159905914	-	MmarC6_1531	-	AsnC family transcriptional regulator
1519	 35.00	0	1431100..1431519	-	139	159905915	-	MmarC6_1532	-	rubrerythrin
1520	 34.67	0	1433599..1434642	-	347	159905916	-	MmarC6_1534	-	malate/L-lactate dehydrogenase
1521	 32.58	0	1434661..1435191	-	176	159905917	-	MmarC6_1535	-	tRNA-splicing endonuclease subunit alpha
1522	 36.43	0	1435381..1436640	+	419	159905918	-	MmarC6_1536	-	peptide chain release factor 1
1523	 31.58	0	1436703..1437101	+	132	159905919	-	MmarC6_1537	-	hypothetical protein
1524	 35.77	0	1437211..1437702	+	163	159905920	-	MmarC6_1538	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1525	 34.66	0	1437739..1438341	+	200	159905921	-	MmarC6_1539	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1526	 32.87	0	1438383..1440524	-	713	159905922	-	MmarC6_1540	-	RNA-binding S1 domain-containing protein
1527	 32.73	0	1440575..1441402	-	275	159905923	-	MmarC6_1541	-	RNA methylase
1528	 26.18	-2	1441422..1441910	-	162	159905924	-	MmarC6_1542	-	hypothetical protein
1529	 32.91	0	1441904..1442848	-	314	159905925	-	MmarC6_1543	-	thiamine-monophosphate kinase
1530	 33.18	0	1443181..1444497	+	438	159905926	-	MmarC6_1544	-	radical SAM domain-containing protein
1531	 33.67	0	1444541..1445719	+	392	159905927	-	MmarC6_1545	-	translation-associated GTPase
1532	 31.21	0	1445754..1446317	+	187	159905928	-	MmarC6_1546	-	metal dependent phophohydrolase
1533	 34.58	0	1446361..1448202	-	613	159905929	-	MmarC6_1547	-	integral membrane sensor signal transduction histidine kinase
1534	 33.86	0	1448329..1449273	-	314	159905930	-	MmarC6_1548	-	YjlA
1535	 34.01	0	1449415..1449711	+	98	159905931	-	MmarC6_1549	-	hypothetical protein
1536	 31.30	0	1449713..1450204	-	163	159905932	-	MmarC6_1550	-	hypothetical protein
1537	 36.94	0	1450286..1451338	-	350	159905933	-	MmarC6_1551	-	cellulase
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.