IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1405	 34.11	0	1322911..1324575	-	554	159905801	-	MmarC6_1418	-	phenylalanyl-tRNA synthetase subunit beta
1406	 35.14	0	1324615..1325664	-	349	159905802	-	MmarC6_1419	-	phosphoribosylaminoimidazole synthetase
1407	 32.00	0	1325726..1326622	-	298	159905803	-	MmarC6_1420	-	hypothetical protein
1408	 34.17	0	1326731..1327570	-	279	159905804	-	MmarC6_1421	-	CBS domain-containing protein
1409	 37.25	0	1327593..1328153	-	186	159905805	-	MmarC6_1422	-	signal-transduction protein
1410	 35.91	0	1328244..1328747	-	167	159905806	-	MmarC6_1423	-	6-pyruvoyl tetrahydropterin synthase
1411	 38.83	+1	1328839..1329657	-	272	159905807	-	MmarC6_1424	-	formylmethanofuran dehydrogenase subunit C
1412	 39.79	+1	1329691..1331394	-	567	159905808	-	MmarC6_1425	-	formylmethanofuran dehydrogenase subunit A
1413	 39.79	+1	1331415..1331801	-	128	159905809	-	MmarC6_1426	-	molydopterin dinucleotide-binding region
1414	 41.56	+2	1331843..1332085	-	80	159905810	-	MmarC6_1427	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1415	 37.02	0	1332108..1333166	-	352	159905811	-	MmarC6_1428	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1416	 36.24	0	1333189..1333635	-	148	159905812	-	MmarC6_1429	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1417	 32.85	0	1333839..1334456	+	205	159905813	-	MmarC6_1430	-	UBA/THIF-type NAD/FAD binding protein
1418	 34.86	0	1334523..1335440	+	305	159905814	-	MmarC6_1431	-	quinolinate synthetase
1419	 33.89	0	1335450..1335809	-	119	159905815	-	MmarC6_1432	-	hypothetical protein
1420	 34.47	0	1335814..1336956	-	380	159905816	-	MmarC6_1433	-	Sep-tRNA:Cys-tRNA synthetase
1421	 28.70	-1	1336984..1337760	-	258	159905817	-	MmarC6_1434	-	ExsB family protein
1422	 29.67	-1	1337757..1338740	-	327	159905818	-	MmarC6_1435	-	biotin synthase
1423	 32.84	0	1338818..1339018	-	66	159905819	-	MmarC6_1436	-	hypothetical protein
1424	 32.80	0	1339047..1339790	-	247	159905820	-	MmarC6_1437	-	hypothetical protein
1425	 33.80	0	1339820..1340245	-	141	159905821	-	MmarC6_1438	-	molybdopterin biosynthesis MoaE protein
1426	 31.25	0	1340238..1340957	-	239	159905822	-	MmarC6_1439	-	UBA/THIF-type NAD/FAD binding protein
1427	 32.05	0	1341034..1341735	+	233	159905823	-	MmarC6_1440	-	formate dehydrogenase family accessory protein FdhD
1428	 30.98	0	1341788..1342678	+	296	159905824	-	MmarC6_1441	-	PP-loop domain-containing protein
1429	 32.58	0	1342704..1343099	-	131	159905825	-	MmarC6_1442	-	HAD family hydrolase
1430	 31.72	0	1343182..1344237	-	351	159905826	-	MmarC6_1443	-	DNA polymerase beta subunit
1431	 38.61	+1	1344295..1344597	-	100	159905827	-	MmarC6_1444	-	FUN14 family protein
1432	 27.80	-1	1344696..1345328	-	210	159905828	-	MmarC6_1445	-	hypothetical protein
1433	 28.07	-1	1345342..1345968	-	208	159905829	-	MmarC6_1446	-	cobalt-precorrin-6Y C(5)-methyltransferase
1434	 31.38	0	1346081..1347259	+	392	159905830	-	MmarC6_1447	-	geranylgeranyl reductase
1435	 35.42	0	1347271..1348035	-	254	159905831	-	MmarC6_1448	-	extracellular solute-binding protein
1436	 37.25	0	1348325..1349803	+	492	159905832	-	MmarC6_1449	-	hypothetical protein
1437	 37.25	0	1349881..1350849	-	322	159905833	-	MmarC6_1450	-	DNA repair and recombination protein RadA
1438	 32.42	0	1350998..1351543	+	181	159905834	-	MmarC6_1451	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
1439	 36.34	0	1351640..1353202	+	520	159905835	-	MmarC6_1452	-	alpha-glucan phosphorylase
1440	 32.79	0	1353329..1355338	+	669	159905836	-	MmarC6_1453	-	helicase c2
1441	 37.26	0	1355427..1356674	+	415	159905837	-	MmarC6_1454	-	LOR/SDH bifunctional protein
1442	 30.00	-1	1356692..1357351	+	219	159905838	-	MmarC6_1455	-	hypothetical protein
1443	 33.33	0	1357385..1358500	+	371	159905839	-	MmarC6_1456	-	histidinol-phosphate aminotransferase
1444	 33.67	0	1358648..1360126	+	492	159905840	-	MmarC6_1457	-	cobyric acid synthase
1445	 28.76	-1	1360228..1360905	+	225	159905841	-	MmarC6_1458	-	hypothetical protein
1446	 40.20	+1	1360920..1361312	-	130	159905842	-	MmarC6_1459	-	hypothetical protein
1447	 41.31	+1	1361350..1362528	-	392	159905843	-	MmarC6_1460	-	acetyl-CoA acetyltransferase
1448	 40.67	+1	1362547..1363596	-	349	159905844	-	MmarC6_1461	-	hypothetical protein
1449	 38.55	+1	1363658..1364347	-	229	159905845	-	MmarC6_1462	-	XRE family transcriptional regulator
1450	 28.45	-1	1364478..1365542	-	354	159905846	-	MmarC6_1463	-	hypothetical protein
1451	 39.01	+1	1365579..1366811	-	410	159905847	-	MmarC6_1464	-	translation initiation factor IF-2 subunit gamma
1452	 38.93	+1	1366972..1367346	-	124	159905848	-	MmarC6_1465	-	30S ribosomal protein S6e
1453	 39.82	+1	1367557..1368897	-	446	159905849	-	MmarC6_1466	-	glutamine synthetase, type I
1454	 34.81	0	1369066..1370355	+	429	159905850	-	MmarC6_1467	-	3-phosphoshikimate 1-carboxyvinyltransferase
1455	 30.20	0	1370421..1371440	+	339	159905851	-	MmarC6_1468	-	peptidase M24
1456	 29.54	-1	1371575..1372339	-	254	159905852	-	MmarC6_1469	-	hypothetical protein
1457	 32.79	0	1372422..1373519	+	365	159905853	-	MmarC6_1470	-	cobalt-precorrin-6A synthase
1458	 31.25	0	1373532..1373915	+	127	159905854	-	MmarC6_1471	-	hypothetical protein
1459	 32.97	0	1373923..1374474	+	183	159905855	-	MmarC6_1472	-	nuclease
1460	 36.61	0	1374732..1376042	-	436	159905856	-	MmarC6_1473	-	diaminopimelate decarboxylase
1461	 31.58	0	1376198..1377052	-	284	159905857	-	MmarC6_1474	-	phosphate uptake regulator, PhoU
1462	 34.38	0	1377158..1377922	-	254	159905858	-	MmarC6_1475	-	ABC transporter related
1463	 34.51	0	1377957..1378718	-	253	159905859	-	MmarC6_1476	-	binding-protein-dependent transport systems inner membrane component
1464	 30.62	0	1378886..1379437	-	183	159905860	-	MmarC6_1477	-	hypothetical protein
1465	 30.05	-1	1379516..1379881	-	121	159905861	-	MmarC6_1478	-	hypothetical protein
1466	 41.41	+1	1379998..1382151	-	717	159905862	-	MmarC6_1479	-	triple helix repeat-containing collagen
1467	 40.92	+1	1382210..1386730	-	1506	159905863	-	MmarC6_1480	-	hypothetical protein
1468	 29.84	-1	1387365..1388480	-	371	159905864	-	MmarC6_1481	-	radical SAM domain-containing protein
1469	 38.07	+1	1388581..1389552	-	323	159905865	-	MmarC6_1482	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
1470	 37.97	+1	1389743..1390195	+	150	159905866	-	MmarC6_1483	-	peptidylprolyl isomerase FKBP-type
1471	 36.94	0	1390273..1390992	+	239	159905867	-	MmarC6_1484	-	ribose 5-phosphate isomerase
1472	 36.96	0	1391138..1391413	+	91	159905868	-	MmarC6_1485	-	hypothetical protein
1473	 28.97	-1	1391445..1392017	-	190	159905869	-	MmarC6_1486	-	class II aldolase/adducin family protein
1474	 35.11	0	1392058..1394139	-	693	159905870	-	MmarC6_1487	-	peptidase S16, Lon-like protease
1475	 29.26	-1	1394153..1394692	-	179	159905871	-	MmarC6_1488	-	hydrogenase maturation protease HycI
1476	 26.70	-1	1394809..1395336	+	175	159905872	-	MmarC6_1489	-	GCN5-related N-acetyltransferase
1477	 32.81	0	1395337..1396098	-	253	159905873	-	MmarC6_1490	-	ABC transporter related
1478	 38.49	+1	1396116..1397162	-	348	159905874	-	MmarC6_1491	-	transport system permease protein
1479	 37.28	0	1397266..1398354	-	362	159905875	-	MmarC6_1492	-	periplasmic binding protein
1480	 35.14	0	1398550..1399710	-	386	159905876	-	MmarC6_1493	-	periplasmic binding protein
1481	 36.98	0	1399789..1400913	-	374	159905877	-	MmarC6_1494	-	periplasmic binding protein
1482	 30.64	0	1401064..1402212	-	382	159905878	-	MmarC6_1495	-	hypothetical protein
1483	 37.61	0	1402291..1402944	-	217	159905879	-	MmarC6_1496	-	peroxiredoxin
1484	 39.51	+1	1403169..1403978	+	269	159905880	-	MmarC6_1497	-	zinc/iron permease
1485	 36.78	0	1404100..1404651	+	183	159905881	-	MmarC6_1498	-	DNA protection protein DPS
1486	 35.96	0	1404884..1405492	+	202	159905882	-	MmarC6_1499	-	FMN-binding protein
1487	 32.36	0	1405551..1406165	-	204	159905883	-	MmarC6_1500	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1488	 33.19	0	1406177..1406869	-	230	159905884	-	MmarC6_1501	-	glycosyl transferase family protein
1489	 37.33	0	1407014..1408240	-	408	159905885	-	MmarC6_1502	-	SufBD protein
1490	 37.08	0	1408210..1408956	-	248	159905886	-	MmarC6_1503	-	ABC transporter related
1491	 34.23	0	1408957..1409511	-	184	159905887	-	MmarC6_1504	-	archaeoflavoprotein AfpA
1492	 35.35	0	1409514..1410107	-	197	159905888	-	MmarC6_1505	-	NADPH-dependent FMN reductase
1493	 33.61	0	1410272..1412443	-	723	159905889	-	MmarC6_1506	-	heavy metal translocating P-type ATPase
1494	 25.93	-2	1412462..1412677	-	71	159905890	-	MmarC6_1507	-	heavy metal transport/detoxification protein
1495	 31.11	0	1412805..1413119	-	104	159905891	-	MmarC6_1508	-	CutA1 divalent ion tolerance protein
1496	 33.68	0	1413137..1414300	-	387	159905892	-	MmarC6_1509	-	beta-lactamase domain-containing protein
1497	 32.76	0	1414329..1414679	-	116	159905893	-	MmarC6_1510	-	hypothetical protein
1498	 37.04	0	1414713..1414901	-	62	159905894	-	MmarC6_1511	-	hypothetical protein
1499	 35.23	0	1414912..1415439	-	175	159905895	-	MmarC6_1512	-	Ferritin Dps family protein
1500	 34.46	0	1415463..1415729	-	88	159905896	-	MmarC6_1513	-	hypothetical protein
1501	 33.61	0	1415751..1416107	-	118	159905897	-	MmarC6_1514	-	desulfoferrodoxin ferrous iron-binding region
1502	 33.97	0	1416120..1416434	-	104	159905898	-	MmarC6_1515	-	carboxymuconolactone decarboxylase
1503	 38.43	+1	1416475..1417377	-	300	159905899	-	MmarC6_1516	-	CoB--CoM heterodisulfide reductase, subunit B
1504	 36.96	0	1417390..1417968	-	192	159905900	-	MmarC6_1517	-	CoB--CoM heterodisulfide reductase, subunit C
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.