IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.95   STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
78	 38.53	+1	66101..67774	-	557	159904474	-	MmarC6_0080	-	hypothetical protein
79	 38.82	+1	67944..68453	-	169	159904475	-	MmarC6_0081	-	hypothetical protein
80	 37.80	+1	68486..69358	-	290	159904476	-	MmarC6_0082	-	hypothetical protein
81	 44.88	+2	69358..69660	-	100	159904477	-	MmarC6_0083	-	hypothetical protein
82	 37.09	0	69660..70058	-	132	159904478	-	MmarC6_0084	-	hypothetical protein
83	 41.73	+2	70060..70440	-	126	159904479	-	MmarC6_0085	-	hypothetical protein
84	 37.56	0	70449..71252	-	267	159904480	-	MmarC6_0086	-	hypothetical protein
85	 43.98	+2	71263..71619	-	118	159904481	-	MmarC6_0087	-	hypothetical protein
86	 37.29	0	71630..72109	-	159	159904482	-	MmarC6_0088	-	hypothetical protein
87	 42.52	+2	72123..72797	-	224	159904483	-	MmarC6_0089	-	hypothetical protein
88	 37.04	0	72880..73122	-	80	159904484	-	MmarC6_0090	-	hypothetical protein
89	 39.86	+1	73545..73988	+	147	159904485	-	MmarC6_0091	-	hypothetical protein
90	 35.49	0	74010..74333	+	107	159904486	-	MmarC6_0092	-	hypothetical protein
91	 33.94	0	74343..74507	+	54	159904487	-	MmarC6_0093	-	hypothetical protein
92	 40.76	+1	74516..75229	+	237	159904488	-	MmarC6_0094	-	hypothetical protein
93	 42.57	+2	75226..75474	+	82	159904489	-	MmarC6_0095	-	hypothetical protein
94	 39.00	+1	75485..77002	+	505	159904490	-	MmarC6_0096	-	hypothetical protein
95	 38.71	+1	77015..79024	+	669	159904491	-	MmarC6_0097	-	hypothetical protein
96	 42.19	+2	79028..79501	+	157	159904492	-	MmarC6_0098	-	hypothetical protein
97	 33.46	0	79635..80453	+	272	159904493	-	MmarC6_0099	-	hypothetical protein
98	 31.37	0	80581..80988	-	135	159904494	-	MmarC6_0100	-	hypothetical protein
99	 33.33	0	80989..81474	-	161	159904495	-	MmarC6_0101	-	putative prophage protein (ps3)
100	 30.53	0	81771..82055	-	94	159904496	-	MmarC6_0102	-	hypothetical protein
101	 28.42	-1	82129..82983	-	284	159904497	-	MmarC6_0103	-	hypothetical protein
102	 30.83	0	83207..83566	-	119	159904498	-	MmarC6_0104	-	transcriptional regulator PadR family protein
103	 30.58	0	83818..84180	-	120	159904499	-	MmarC6_0105	-	transcriptional regulator PadR family protein
104	 36.67	0	84349..84558	+	69	159904500	-	MmarC6_0106	-	hypothetical protein
105	 36.92	0	84566..85123	+	185	159904501	-	MmarC6_0107	-	hypothetical protein
106	 38.00	+1	85123..87135	+	670	159904502	-	MmarC6_0108	-	MCM family protein
107	 37.41	0	87135..87404	+	89	159904503	-	MmarC6_0109	-	hypothetical protein
108	 36.00	0	87450..88424	+	324	159904504	-	MmarC6_0110	-	integrase family protein
109	 32.54	0	89005..89382	+	125	159904505	-	MmarC6_0111	-	hypothetical protein
110	 37.58	0	89625..90707	-	360	159904506	-	MmarC6_0112	-	hypothetical protein
111	 22.88	-2	91750..92055	-	101	159904507	-	MmarC6_0113	-	hypothetical protein
112	 30.24	0	92107..92397	-	96	159904508	-	MmarC6_0114	-	hypothetical protein
113	 32.09	0	92828..93790	-	320	159904509	-	MmarC6_0115	-	CaCA family Na(+)/Ca(+) antiporter
114	 26.17	-2	94586..95269	+	227	159904510	-	MmarC6_0116	-	hypothetical protein
115	 34.33	0	95306..95905	-	199	159904511	-	MmarC6_0117	-	signal transduction histidine kinase, LytS
116	 35.03	0	96255..97079	+	274	159904512	-	MmarC6_0118	-	hypothetical protein
117	 27.69	-1	97115..97309	-	64	159904513	-	MmarC6_0119	-	hypothetical protein
118	 37.71	0	97436..97846	+	136	159904514	-	MmarC6_0120	-	hypothetical protein
119	 29.81	-1	97930..98298	+	122	159904515	-	MmarC6_0121	-	hypothetical protein
120	 24.67	-2	98425..98574	-	49	159904516	-	MmarC6_0122	-	hypothetical protein
121	 29.74	-1	98594..99622	-	342	159904517	-	MmarC6_0123	-	FRG domain-containing protein
122	 28.15	-1	99631..100401	-	256	159904518	-	MmarC6_0124	-	hypothetical protein
123	 25.87	-2	100472..100672	+	66	159904519	-	MmarC6_0125	-	hypothetical protein
124	 29.32	-1	100681..101253	+	190	159904520	-	MmarC6_0126	-	hypothetical protein
125	 34.26	0	101318..101533	+	71	159904521	-	MmarC6_0127	-	hypothetical protein
126	 31.02	0	101954..102256	-	100	159904522	-	MmarC6_0128	-	transcriptional regulator PadR family protein
127	 33.71	0	102661..103185	+	174	159904523	-	MmarC6_0130	-	hypothetical protein
128	 35.77	0	103157..103402	+	81	159904524	-	MmarC6_0131	-	hypothetical protein
129	 35.61	0	103595..103990	+	131	159904525	-	MmarC6_0132	-	hypothetical protein
130	 37.19	0	103992..106016	+	674	159904526	-	MmarC6_0133	-	MCM family protein
131	 29.22	-1	106020..106262	+	80	159904527	-	MmarC6_0134	-	hypothetical protein
132	 32.40	0	106274..107242	+	322	159904528	-	MmarC6_0135	-	integrase family protein
133	 28.07	-1	107271..107726	-	151	159904529	-	MmarC6_0136	-	MarR family transcriptional regulator
134	 33.83	0	108021..110219	+	732	159904530	-	MmarC6_0137	-	methyl-accepting chemotaxis sensory transducer
135	 27.40	-1	110251..110739	+	162	159904531	-	MmarC6_0138	-	hypothetical protein
136	 37.23	0	111925..112515	+	196	159904532	-	MmarC6_0139	-	protein of unknown function DUF71 ATP-binding region
137	 34.73	0	112643..113428	-	261	159904533	-	MmarC6_0140	-	chymotrypsin serine protease
138	 38.90	+1	113804..119206	+	1800	159904534	-	MmarC6_0141	-	cobaltochelatase
139	 35.38	0	119338..120120	+	260	159904535	-	MmarC6_0142	-	chymotrypsin serine protease
140	 31.62	0	120299..121057	-	252	159904536	-	MmarC6_0143	-	extracellular solute-binding protein
141	 34.41	0	121355..121912	-	185	159904537	-	MmarC6_0144	-	hypothetical protein
142	 35.06	0	122084..124222	-	712	159904538	-	MmarC6_0145	-	hypothetical protein
143	 29.72	-1	124501..125994	+	497	159904539	-	MmarC6_0146	-	hypothetical protein
144	 34.73	0	126194..127123	+	309	159904540	-	MmarC6_0147	-	elongation factor Tu domain-containing protein
145	 36.19	0	127177..127980	-	267	159904541	-	MmarC6_0148	-	L-aspartate dehydrogenase
146	 32.16	0	128005..128259	-	84	159904542	-	MmarC6_0149	-	PRC-barrel domain-containing protein
147	 33.33	0	128383..128553	+	56	159904543	-	MmarC6_0150	-	hypothetical protein
148	 31.49	0	128573..129493	-	306	159904544	-	MmarC6_0151	-	DNA adenine methylase
149	 30.82	0	129568..129885	-	105	159904545	-	MmarC6_0152	-	hypothetical protein
150	 32.59	0	130020..131363	+	447	159904546	-	MmarC6_0153	-	MATE efflux family protein
151	 30.56	0	131457..132680	+	407	159904547	-	MmarC6_0154	-	exodeoxyribonuclease VII large subunit
152	 29.90	-1	132701..132904	+	67	159904548	-	MmarC6_0155	-	exodeoxyribonuclease VII small subunit
153	 29.05	-1	132914..133333	+	139	159904549	-	MmarC6_0156	-	hypothetical protein
154	 35.46	0	133451..136315	+	954	159904550	-	MmarC6_0157	-	excinuclease ABC, A subunit
155	 29.99	-1	136323..137906	+	527	159904551	-	MmarC6_0158	-	excinuclease ABC subunit C
156	 35.09	0	137903..139843	+	646	159904552	-	MmarC6_0159	-	excinuclease ABC subunit B
157	 30.47	0	139939..140496	+	185	159904553	-	MmarC6_0160	-	hypothetical protein
158	 25.62	-2	140505..140906	-	133	159904554	-	MmarC6_0161	-	hypothetical protein
159	 31.01	0	141075..141419	-	114	159904555	-	MmarC6_0162	-	hypothetical protein
160	 35.68	0	141475..142155	-	226	159904556	-	MmarC6_0163	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
161	 35.04	0	142259..143899	-	546	159904557	-	MmarC6_0164	-	hydroxylamine reductase
162	 30.15	-1	144156..144563	-	135	159904558	-	MmarC6_0165	-	CopG family transcriptional regulator
163	 35.04	0	144605..144955	-	116	159904559	-	MmarC6_0166	-	hypothetical protein
164	 27.93	-1	145340..145876	+	178	159904560	-	MmarC6_0167	-	hypothetical protein
165	 33.10	0	145879..146304	-	141	159904561	-	MmarC6_0168	-	amino acid-binding ACT domain-containing protein
166	 36.80	0	146318..147616	-	432	159904562	-	MmarC6_0169	-	phenylacetate--CoA ligase
167	 35.63	0	147627..148193	-	188	159904563	-	MmarC6_0170	-	indolepyruvate oxidoreductase subunit B
168	 36.33	0	148193..149929	-	578	159904564	-	MmarC6_0171	-	indolepyruvate ferredoxin oxidoreductase, alpha subunit
169	 30.66	0	150405..151151	-	248	159904565	-	MmarC6_0172	-	extracellular solute-binding protein
170	 29.65	-1	151240..152298	-	352	159904566	-	MmarC6_0173	-	magnesium and cobalt transport protein CorA
171	 34.05	0	152308..155088	-	926	159904567	-	MmarC6_0174	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
172	 35.10	0	155246..155869	-	207	159904568	-	MmarC6_0175	-	hypothetical protein
173	 39.24	+1	156270..156980	-	236	159904569	-	MmarC6_0176	-	hypothetical protein
174	 37.00	0	157185..158438	+	417	159904570	-	MmarC6_0177	-	sodium/hydrogen exchanger
175	 35.12	0	158451..159734	+	427	159904571	-	MmarC6_0178	-	nucleotide sugar dehydrogenase
176	 30.52	0	159739..160839	+	366	159904572	-	MmarC6_0179	-	UDP-N-acetylglucosamine 2-epimerase
177	 38.16	+1	160933..161802	+	289	159904573	-	MmarC6_0180	-	cobyrinic acid ac-diamide synthase
33.95	MEAN

3.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.