IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1178	 31.40	0	1117948..1118721	-	257	159905574	-	MmarC6_1191	-	cobalt ABC transporter, inner membrane subunit CbiQ
1179	 39.46	+1	1118735..1119028	-	97	159905575	-	MmarC6_1192	-	cobalt transport protein CbiN
1180	 40.27	+1	1119028..1119705	-	225	159905576	-	MmarC6_1193	-	cobalt transport protein CbiM
1181	 38.27	+1	1119901..1121157	-	418	159905577	-	MmarC6_1194	-	homoaconitate hydratase family protein
1182	 33.01	0	1121271..1122203	-	310	159905578	-	MmarC6_1195	-	hypothetical protein
1183	 33.85	0	1122218..1123561	-	447	159905579	-	MmarC6_1196	-	cobyrinic acid a,c-diamide synthase
1184	 28.05	-1	1123677..1124414	+	245	159905580	-	MmarC6_1197	-	hypothetical protein
1185	 32.09	0	1124523..1125326	+	267	159905581	-	MmarC6_1198	-	hypothetical protein
1186	 35.27	0	1125357..1128461	-	1034	159905582	-	MmarC6_1199	-	isoleucyl-tRNA synthetase
1187	 36.72	0	1128501..1128884	-	127	159905583	-	MmarC6_1200	-	hypothetical protein
1188	 36.46	0	1128941..1129612	-	223	159905584	-	MmarC6_1201	-	hypothetical protein
1189	 31.05	0	1129628..1130677	-	349	159905585	-	MmarC6_1202	-	hypothetical protein
1190	 33.79	0	1130985..1131419	-	144	159905586	-	MmarC6_1203	-	prefoldin, alpha subunit
1191	 32.01	0	1131613..1131915	+	100	159905587	-	MmarC6_1204	-	putative monovalent cation/H+ antiporter subunit E
1192	 31.32	0	1131966..1133156	+	396	159905588	-	MmarC6_1205	-	hypothetical protein
1193	 30.35	0	1133159..1133560	-	133	159905589	-	MmarC6_1206	-	helix-turn-helix type 11 domain-containing protein
1194	 36.29	0	1133581..1134222	-	213	159905590	-	MmarC6_1207	-	signal transduction protein
1195	 34.78	0	1134238..1134996	-	252	159905591	-	MmarC6_1208	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1196	 33.74	0	1135017..1135502	-	161	159905592	-	MmarC6_1209	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1197	 35.45	0	1135495..1136676	-	393	159905593	-	MmarC6_1210	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1198	 37.59	0	1136705..1137832	-	375	159905594	-	MmarC6_1211	-	NADH dehydrogenase (quinone)
1199	 40.34	+1	1137847..1138317	-	156	159905595	-	MmarC6_1212	-	NADH ubiquinone oxidoreductase 20 kDa subunit
1200	 36.74	0	1138339..1138749	-	136	159905596	-	MmarC6_1213	-	(NiFe)-hydrogenase-3-type complex Eha, EhaM
1201	 40.00	+1	1138765..1139064	-	99	159905597	-	MmarC6_1214	-	hypothetical protein
1202	 32.94	0	1139069..1139320	-	83	159905598	-	MmarC6_1215	-	hypothetical protein
1203	 39.02	+1	1139329..1140189	-	286	159905599	-	MmarC6_1216	-	NADH dehydrogenase (ubiquinone)
1204	 35.24	0	1140209..1140418	-	69	159905600	-	MmarC6_1217	-	hypothetical protein
1205	 37.86	+1	1140428..1141090	-	220	159905601	-	MmarC6_1218	-	putative transmembrane subunit of a hydrogenase
1206	 35.66	0	1141112..1141798	-	228	159905602	-	MmarC6_1219	-	hypothetical protein
1207	 36.08	0	1141798..1142271	-	157	159905603	-	MmarC6_1220	-	hypothetical protein
1208	 38.43	+1	1142273..1142527	-	84	159905604	-	MmarC6_1221	-	hypothetical protein
1209	 35.84	0	1142536..1142814	-	92	159905605	-	MmarC6_1222	-	hypothetical protein
1210	 37.41	0	1142820..1143089	-	89	159905606	-	MmarC6_1223	-	hypothetical protein
1211	 38.21	+1	1143089..1143580	-	163	159905607	-	MmarC6_1224	-	hypothetical protein
1212	 36.33	0	1143567..1143833	-	88	159905608	-	MmarC6_1225	-	hypothetical protein
1213	 34.27	0	1143839..1144477	-	212	159905609	-	MmarC6_1226	-	XRE family transcriptional regulator
1214	 34.21	0	1144814..1145386	+	190	159905610	-	MmarC6_1227	-	ZPR1-related zinc finger protein
1215	 37.89	+1	1145416..1145985	-	189	159905611	-	MmarC6_1228	-	GMP synthase subunit A
1216	 36.44	0	1146007..1146906	-	299	159905612	-	MmarC6_1229	-	methionine aminopeptidase
1217	 37.30	0	1146906..1148015	-	369	159905613	-	MmarC6_1230	-	small GTP-binding protein
1218	 35.42	0	1148210..1148497	-	95	159905614	-	MmarC6_1231	-	ArsR family transcriptional regulator
1219	 38.99	+1	1148610..1149299	-	229	159905615	-	MmarC6_1232	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1220	 33.76	0	1149406..1150347	+	313	159905616	-	MmarC6_1233	-	tRNA-modifying enzyme
1221	 37.84	+1	1150349..1151569	-	406	159905617	-	MmarC6_1234	-	cofactor-independent phosphoglycerate mutase
1222	 36.67	0	1151719..1152918	-	399	159905618	-	MmarC6_1235	-	SCP-like extracellular
1223	 37.89	+1	1153109..1154206	-	365	159905619	-	MmarC6_1236	-	DNA topoisomerase VI subunit A
1224	 38.50	+1	1154434..1155516	+	360	159905620	-	MmarC6_1237	-	cell division protein FtsZ
1225	 32.50	0	1155549..1155788	+	79	159905621	-	MmarC6_1238	-	preprotein translocase subunit SecE
1226	 38.10	+1	1155924..1156364	+	146	159905622	-	MmarC6_1239	-	transcription antitermination protein NusG
1227	 38.75	+1	1156478..1156957	+	159	159905623	-	MmarC6_1240	-	ribosomal protein L11
1228	 39.45	+1	1157066..1158079	+	337	159905624	-	MmarC6_1241	-	adenylosuccinate synthetase
1229	 36.31	0	1158163..1159104	+	313	159905625	-	MmarC6_1242	-	2-phosphoglycerate kinase
1230	 35.07	0	1159128..1160570	+	480	159905626	-	MmarC6_1243	-	cation transporter
1231	 37.74	0	1160640..1160957	+	105	159905627	-	MmarC6_1244	-	transcription termination factor Tfs
1232	 30.86	0	1161011..1161172	-	53	159905628	-	MmarC6_1245	-	hypothetical protein
1233	 38.49	+1	1161237..1162613	-	458	159905629	-	MmarC6_1246	-	hypothetical protein
1234	 35.59	0	1162617..1163237	-	206	159905630	-	MmarC6_1247	-	deoxycytidine triphosphate deaminase
1235	 36.11	0	1163262..1163801	-	179	159905631	-	MmarC6_1248	-	tRNA 2'-O-methylase
1236	 34.86	0	1163918..1166473	-	851	159905632	-	MmarC6_1249	-	oligosaccharyl transferase STT3 subunit
1237	 29.78	-1	1166572..1167471	+	299	159905633	-	MmarC6_1250	-	glycosyl transferase family protein
1238	 37.25	0	1167501..1168829	-	442	159905634	-	MmarC6_1251	-	preprotein translocase subunit SecY
1239	 38.19	+1	1169056..1169487	-	143	159905635	-	MmarC6_1252	-	50S ribosomal protein L15P
1240	 36.77	0	1169502..1169966	-	154	159905636	-	MmarC6_1253	-	50S ribosomal protein L30P
1241	 39.28	+1	1170001..1170690	-	229	159905637	-	MmarC6_1254	-	30S ribosomal protein S5P
1242	 37.97	+1	1170701..1171282	-	193	159905638	-	MmarC6_1255	-	50S ribosomal protein L18P
1243	 37.56	0	1171306..1171755	-	149	159905639	-	MmarC6_1256	-	50S ribosomal protein L19e
1244	 34.80	0	1171782..1172189	-	135	159905640	-	MmarC6_1257	-	50S ribosomal protein L32e
1245	 36.98	0	1172199..1172747	-	182	159905641	-	MmarC6_1258	-	50S ribosomal protein L6P
1246	 38.42	+1	1172769..1173161	-	130	159905642	-	MmarC6_1259	-	30S ribosomal protein S8P
1247	 33.95	0	1173180..1173341	-	53	159905643	-	MmarC6_1260	-	30S ribosomal protein S14P
1248	 37.18	0	1173351..1173896	-	181	159905644	-	MmarC6_1261	-	50S ribosomal protein L5P
1249	 36.46	0	1173925..1174659	-	244	159905645	-	MmarC6_1262	-	30S ribosomal protein S4e
1250	 31.67	0	1174671..1175030	-	119	159905646	-	MmarC6_1263	-	50S ribosomal protein L24P
1251	 39.60	+1	1175050..1175448	-	132	159905647	-	MmarC6_1264	-	50S ribosomal protein L14P
1252	 38.79	+1	1175469..1175798	-	109	159905648	-	MmarC6_1265	-	30S ribosomal protein S17P
1253	 31.65	0	1175963..1176259	-	98	159905649	-	MmarC6_1266	-	ribonuclease P protein component 1
1254	 37.86	+1	1176327..1176635	-	102	159905650	-	MmarC6_1267	-	translation initiation factor Sui1
1255	 37.68	0	1176728..1176934	-	68	159905651	-	MmarC6_1268	-	50S ribosomal protein L29
1256	 36.64	0	1176945..1177580	-	211	159905652	-	MmarC6_1269	-	30S ribosomal protein S3P
1257	 35.06	0	1177591..1178052	-	153	159905653	-	MmarC6_1270	-	50S ribosomal protein L22P
1258	 31.45	0	1178072..1178230	-	52	159905654	-	MmarC6_1271	-	hypothetical protein
1259	 36.67	0	1178373..1178642	-	89	159905655	-	MmarC6_1272	-	elongation factor 1-beta
1260	 37.58	0	1178675..1178839	-	54	159905656	-	MmarC6_1273	-	hypothetical protein
1261	 32.08	0	1178857..1179495	-	212	159905657	-	MmarC6_1274	-	aspartate/glutamate/uridylate kinase
1262	 30.05	-1	1179496..1180743	-	415	159905658	-	MmarC6_1275	-	succinyl-diaminopimelate desuccinylase
1263	 31.71	0	1180777..1184346	-	1189	159905659	-	MmarC6_1276	-	chromosome segregation protein SMC
1264	 35.86	0	1184733..1186037	+	434	159905660	-	MmarC6_1277	-	aminotransferase
1265	 34.13	0	1186199..1188454	+	751	159905661	-	MmarC6_1278	-	Hef nuclease
1266	 29.22	-1	1188464..1189120	+	218	159905662	-	MmarC6_1279	-	3-dehydroquinate dehydratase, type I
1267	 29.26	-1	1189123..1189539	-	138	159905663	-	MmarC6_1280	-	hypothetical protein
1268	 39.15	+1	1189678..1191120	+	480	159905664	-	MmarC6_1281	-	hypothetical protein
1269	 36.58	0	1191198..1192244	+	348	159905665	-	MmarC6_1282	-	aspartate-semialdehyde dehydrogenase
1270	 34.23	0	1192326..1192547	+	73	159905666	-	MmarC6_1283	-	hypothetical protein
1271	 33.07	0	1192654..1193796	+	380	159905667	-	MmarC6_1284	-	major facilitator transporter
1272	 32.52	0	1193851..1194096	+	81	159905668	-	MmarC6_1285	-	redox-active disulfide protein 2
1273	 35.79	0	1194134..1194988	-	284	159905669	-	MmarC6_1286	-	hypothetical protein
1274	 33.03	0	1195049..1196047	-	332	159905670	-	MmarC6_1287	-	hypothetical protein
1275	 38.40	+1	1196153..1197001	-	282	159905671	-	MmarC6_1288	-	coenzyme F420-reducing hydrogenase subunit beta
1276	 38.72	+1	1197035..1197721	-	228	159905672	-	MmarC6_1289	-	coenzyme F420 hydrogenase, subunit gamma
1277	 38.29	+1	1197736..1198260	-	174	159905673	-	MmarC6_1290	-	coenzyme F420-reducing hydrogenase delta subunit
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.