IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1118	 33.58	0	1061667..1062488	-	273	159905514	-	MmarC6_1130	-	hypothetical protein
1119	 33.33	0	1062485..1063051	-	188	159905515	-	MmarC6_1131	-	hypothetical protein
1120	 41.40	+1	1063113..1063583	-	156	159905516	-	MmarC6_1132	-	transporter component
1121	 40.35	+1	1063605..1064060	-	151	159905517	-	MmarC6_1133	-	cytochrome c heme-binding site
1122	 28.92	-1	1064282..1064893	+	203	159905518	-	MmarC6_1134	-	nucleic acid binding OB-fold tRNA/helicase-type
1123	 31.00	0	1066098..1066655	-	185	159905519	-	MmarC6_1136	-	hypothetical protein
1124	 32.01	0	1066652..1067104	-	150	159905520	-	MmarC6_1137	-	hypothetical protein
1125	 36.06	0	1067475..1068719	+	414	159905521	-	MmarC6_1138	-	phosphoglycerate kinase
1126	 36.28	0	1068847..1069830	+	327	159905522	-	MmarC6_1139	-	methanogenesis marker protein 2
1127	 36.08	0	1069840..1070130	+	96	159905523	-	MmarC6_1140	-	hypothetical protein
1128	 23.49	-2	1070127..1070837	+	236	159905524	-	MmarC6_1141	-	methyltransferase type 11
1129	 33.95	0	1070834..1071643	+	269	159905525	-	MmarC6_1142	-	prephenate dehydratase
1130	 38.05	+1	1071751..1073001	+	416	159905526	-	MmarC6_1143	-	aspartate aminotransferase
1131	 28.70	-1	1073029..1073718	-	229	159905527	-	MmarC6_1144	-	ribonuclease III
1132	 33.89	0	1073769..1075031	-	420	159905528	-	MmarC6_1145	-	peptidase U62 modulator of DNA gyrase
1133	 38.89	+1	1075141..1075986	+	281	159905529	-	MmarC6_1146	-	preprotein translocase subunit SecF
1134	 37.62	0	1076004..1077170	+	388	159905530	-	MmarC6_1147	-	preprotein translocase subunit SecD
1135	 33.63	0	1077222..1078244	+	340	159905531	-	MmarC6_1148	-	hypothetical protein
1136	 32.62	0	1078254..1078673	+	139	159905532	-	MmarC6_1149	-	hypothetical protein
1137	 34.67	0	1078708..1079382	-	224	159905533	-	MmarC6_1150	-	hydrogenase accessory protein HypB
1138	 33.72	0	1079533..1080315	+	260	159905534	-	MmarC6_1151	-	binding-protein-dependent transport systems inner membrane component
1139	 31.31	0	1080328..1081266	+	312	159905535	-	MmarC6_1152	-	ABC transporter related
1140	 35.99	0	1081436..1082038	+	200	159905536	-	MmarC6_1153	-	peptidase M50
1141	 33.78	0	1082057..1082725	+	222	159905537	-	MmarC6_1154	-	chromosome segregation and condensation protein ScpA
1142	 29.72	-1	1082867..1084000	+	377	159905538	-	MmarC6_1155	-	phosphate uptake regulator, PhoU
1143	 31.60	0	1084016..1084246	+	76	159905539	-	MmarC6_1156	-	hypothetical protein
1144	 39.78	+1	1084366..1085994	+	542	159905540	-	MmarC6_1157	-	thermosome
1145	 31.14	0	1086089..1087408	-	439	159905541	-	MmarC6_1158	-	prephenate dehydrogenase
1146	 39.48	+1	1087729..1088850	+	373	159905542	-	MmarC6_1159	-	alanine dehydrogenase
1147	 35.83	0	1088908..1090029	+	373	159905543	-	MmarC6_1160	-	alanine racemase
1148	 41.19	+1	1090244..1091605	+	453	159905544	-	MmarC6_1161	-	amino acid carrier protein
1149	 37.27	0	1091776..1093071	+	431	159905545	-	MmarC6_1162	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1150	 27.64	-1	1093167..1093640	-	157	159905546	-	MmarC6_1163	-	hypothetical protein
1151	 29.78	-1	1093673..1094431	-	252	159905547	-	MmarC6_1164	-	extracellular solute-binding protein
1152	 38.89	+1	1094637..1094978	-	113	159905548	-	MmarC6_1165	-	hypothetical protein
1153	 32.03	0	1094999..1095304	-	101	159905549	-	MmarC6_1166	-	hypothetical protein
1154	 38.42	+1	1095559..1096089	+	176	159905550	-	MmarC6_1167	-	pyruvate ferredoxin oxidoreductase subunit gamma
1155	 34.88	0	1096103..1096360	+	85	159905551	-	MmarC6_1168	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
1156	 37.11	0	1096382..1097545	+	387	159905552	-	MmarC6_1169	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1157	 42.25	+2	1097562..1098458	+	298	159905553	-	MmarC6_1170	-	pyruvate ferredoxin oxidoreductase subunit beta
1158	 38.10	+1	1098480..1098983	+	167	159905554	-	MmarC6_1171	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1159	 37.17	0	1099001..1099417	+	138	159905555	-	MmarC6_1172	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1160	 30.08	-1	1099428..1099919	-	163	159905556	-	MmarC6_1173	-	phosphodiesterase
1161	 38.98	+1	1100486..1101583	+	365	159905557	-	MmarC6_1174	-	cell division protein FtsZ
1162	 34.11	0	1101625..1102137	+	170	159905558	-	MmarC6_1175	-	hypothetical protein
1163	 30.40	0	1102149..1102931	-	260	159905559	-	MmarC6_1176	-	hypothetical protein
1164	 32.71	0	1102928..1103407	-	159	159905560	-	MmarC6_1177	-	hypothetical protein
1165	 32.21	0	1103429..1104937	-	502	159905561	-	MmarC6_1178	-	phenylalanyl-tRNA synthetase subunit alpha
1166	 32.93	0	1105014..1106012	+	332	159905562	-	MmarC6_1179	-	radical SAM family protein
1167	 28.69	-1	1106031..1106633	-	200	159905563	-	MmarC6_1180	-	hypothetical protein
1168	 33.56	0	1106716..1108059	-	447	159905564	-	MmarC6_1181	-	S-layer family protein
1169	 34.23	0	1108166..1108723	+	185	159905565	-	MmarC6_1182	-	orotate phosphoribosyltransferase
1170	 33.02	0	1108768..1110036	+	422	159905566	-	MmarC6_1183	-	amidohydrolase
1171	 25.66	-2	1110040..1110834	-	264	159905567	-	MmarC6_1184	-	chromatin associated protein KTI12
1172	 34.22	0	1110898..1112598	+	566	159905568	-	MmarC6_1185	-	ATP-NAD/AcoX kinase
1173	 35.37	0	1112785..1114161	-	458	159905569	-	MmarC6_1186	-	peptidase U62 modulator of DNA gyrase
1174	 32.55	0	1114206..1115603	-	465	159905570	-	MmarC6_1187	-	aldehyde dehydrogenase
1175	 36.32	0	1115739..1116542	+	267	159905571	-	MmarC6_1188	-	MscS mechanosensitive ion channel
1176	 32.10	0	1116562..1117047	-	161	159905572	-	MmarC6_1189	-	molybdenum cofactor synthesis domain-containing protein
1177	 36.17	0	1117040..1117885	-	281	159905573	-	MmarC6_1190	-	cobalt transporter ATP-binding subunit
1178	 31.40	0	1117948..1118721	-	257	159905574	-	MmarC6_1191	-	cobalt ABC transporter, inner membrane subunit CbiQ
1179	 39.46	+1	1118735..1119028	-	97	159905575	-	MmarC6_1192	-	cobalt transport protein CbiN
1180	 40.27	+1	1119028..1119705	-	225	159905576	-	MmarC6_1193	-	cobalt transport protein CbiM
1181	 38.27	+1	1119901..1121157	-	418	159905577	-	MmarC6_1194	-	homoaconitate hydratase family protein
1182	 33.01	0	1121271..1122203	-	310	159905578	-	MmarC6_1195	-	hypothetical protein
1183	 33.85	0	1122218..1123561	-	447	159905579	-	MmarC6_1196	-	cobyrinic acid a,c-diamide synthase
1184	 28.05	-1	1123677..1124414	+	245	159905580	-	MmarC6_1197	-	hypothetical protein
1185	 32.09	0	1124523..1125326	+	267	159905581	-	MmarC6_1198	-	hypothetical protein
1186	 35.27	0	1125357..1128461	-	1034	159905582	-	MmarC6_1199	-	isoleucyl-tRNA synthetase
1187	 36.72	0	1128501..1128884	-	127	159905583	-	MmarC6_1200	-	hypothetical protein
1188	 36.46	0	1128941..1129612	-	223	159905584	-	MmarC6_1201	-	hypothetical protein
1189	 31.05	0	1129628..1130677	-	349	159905585	-	MmarC6_1202	-	hypothetical protein
1190	 33.79	0	1130985..1131419	-	144	159905586	-	MmarC6_1203	-	prefoldin, alpha subunit
1191	 32.01	0	1131613..1131915	+	100	159905587	-	MmarC6_1204	-	putative monovalent cation/H+ antiporter subunit E
1192	 31.32	0	1131966..1133156	+	396	159905588	-	MmarC6_1205	-	hypothetical protein
1193	 30.35	0	1133159..1133560	-	133	159905589	-	MmarC6_1206	-	helix-turn-helix type 11 domain-containing protein
1194	 36.29	0	1133581..1134222	-	213	159905590	-	MmarC6_1207	-	signal transduction protein
1195	 34.78	0	1134238..1134996	-	252	159905591	-	MmarC6_1208	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1196	 33.74	0	1135017..1135502	-	161	159905592	-	MmarC6_1209	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1197	 35.45	0	1135495..1136676	-	393	159905593	-	MmarC6_1210	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1198	 37.59	0	1136705..1137832	-	375	159905594	-	MmarC6_1211	-	NADH dehydrogenase (quinone)
1199	 40.34	+1	1137847..1138317	-	156	159905595	-	MmarC6_1212	-	NADH ubiquinone oxidoreductase 20 kDa subunit
1200	 36.74	0	1138339..1138749	-	136	159905596	-	MmarC6_1213	-	(NiFe)-hydrogenase-3-type complex Eha, EhaM
1201	 40.00	+1	1138765..1139064	-	99	159905597	-	MmarC6_1214	-	hypothetical protein
1202	 32.94	0	1139069..1139320	-	83	159905598	-	MmarC6_1215	-	hypothetical protein
1203	 39.02	+1	1139329..1140189	-	286	159905599	-	MmarC6_1216	-	NADH dehydrogenase (ubiquinone)
1204	 35.24	0	1140209..1140418	-	69	159905600	-	MmarC6_1217	-	hypothetical protein
1205	 37.86	+1	1140428..1141090	-	220	159905601	-	MmarC6_1218	-	putative transmembrane subunit of a hydrogenase
1206	 35.66	0	1141112..1141798	-	228	159905602	-	MmarC6_1219	-	hypothetical protein
1207	 36.08	0	1141798..1142271	-	157	159905603	-	MmarC6_1220	-	hypothetical protein
1208	 38.43	+1	1142273..1142527	-	84	159905604	-	MmarC6_1221	-	hypothetical protein
1209	 35.84	0	1142536..1142814	-	92	159905605	-	MmarC6_1222	-	hypothetical protein
1210	 37.41	0	1142820..1143089	-	89	159905606	-	MmarC6_1223	-	hypothetical protein
1211	 38.21	+1	1143089..1143580	-	163	159905607	-	MmarC6_1224	-	hypothetical protein
1212	 36.33	0	1143567..1143833	-	88	159905608	-	MmarC6_1225	-	hypothetical protein
1213	 34.27	0	1143839..1144477	-	212	159905609	-	MmarC6_1226	-	XRE family transcriptional regulator
1214	 34.21	0	1144814..1145386	+	190	159905610	-	MmarC6_1227	-	ZPR1-related zinc finger protein
1215	 37.89	+1	1145416..1145985	-	189	159905611	-	MmarC6_1228	-	GMP synthase subunit A
1216	 36.44	0	1146007..1146906	-	299	159905612	-	MmarC6_1229	-	methionine aminopeptidase
1217	 37.30	0	1146906..1148015	-	369	159905613	-	MmarC6_1230	-	small GTP-binding protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.