IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1070	 38.23	+1	1021249..1022820	+	523	159905466	-	MmarC6_1082	-	D-3-phosphoglycerate dehydrogenase
1071	 36.47	0	1022847..1023260	+	137	159905467	-	MmarC6_1083	-	hypothetical protein
1072	 33.78	0	1023283..1023507	-	74	159905468	-	MmarC6_1084	-	hypothetical protein
1073	 35.92	0	1023628..1024476	-	282	159905469	-	MmarC6_1085	-	agmatinase
1074	 36.06	0	1024518..1025360	-	280	159905470	-	MmarC6_1086	-	spermidine synthase
1075	 42.01	+2	1025357..1025725	-	122	159905471	-	MmarC6_1087	-	S-adenosylmethionine decarboxylase proenzyme
1076	 41.82	+2	1025852..1026346	-	164	159905472	-	MmarC6_1088	-	pyruvoyl-dependent arginine decarboxylase
1077	 33.02	0	1026528..1028429	-	633	159905473	-	MmarC6_1089	-	putative DNA helicase
1078	 31.30	0	1028549..1030120	+	523	159905474	-	MmarC6_1090	-	dihydropteroate synthase-related protein
1079	 38.16	+1	1030191..1030646	-	151	159905475	-	MmarC6_1091	-	30S ribosomal protein S15P
1080	 34.50	0	1030775..1031290	-	171	159905476	-	MmarC6_1092	-	nicotinamide-nucleotide adenylyltransferase
1081	 37.08	0	1031421..1033046	+	541	159905477	-	MmarC6_1093	-	ELP3 family histone acetyltransferase
1082	 34.62	0	1033060..1033215	-	51	159905478	-	MmarC6_1094	-	hypothetical protein
1083	 30.34	0	1033401..1034135	+	244	159905479	-	MmarC6_1095	-	6-carboxyhexanoate--CoA ligase
1084	 30.73	0	1034144..1035256	+	370	159905480	-	MmarC6_1096	-	8-amino-7-oxononanoate synthase
1085	 30.72	0	1035319..1035891	+	190	159905481	-	MmarC6_1097	-	dethiobiotin synthase
1086	 26.26	-2	1035903..1036199	-	98	159905482	-	MmarC6_1098	-	hypothetical protein
1087	 30.58	0	1036288..1037232	+	314	159905483	-	MmarC6_1099	-	nucleoside recognition domain-containing protein
1088	 32.54	0	1037241..1037996	+	251	159905484	-	MmarC6_1100	-	TatD family hydrolase
1089	 36.25	0	1038007..1038315	+	102	159905485	-	MmarC6_1101	-	hypothetical protein
1090	 33.15	0	1038290..1038826	+	178	159905486	-	MmarC6_1102	-	hypothetical protein
1091	 40.94	+1	1038917..1039876	-	319	159905487	-	MmarC6_1103	-	tetrahydromethanopterin S-methyltransferase subunit H
1092	 36.44	0	1039901..1040125	-	74	159905488	-	MmarC6_1104	-	tetrahydromethanopterin S-methyltransferase subunit G
1093	 41.21	+1	1040130..1040891	-	253	159905489	-	MmarC6_1105	-	tetrahydromethanopterin S-methyltransferase subunit A
1094	 40.28	+1	1040908..1041627	-	239	159905490	-	MmarC6_1106	-	tetrahydromethanopterin S-methyltransferase subunit A
1095	 36.09	0	1041649..1041975	-	108	159905491	-	MmarC6_1107	-	tetrahydromethanopterin S-methyltransferase subunit B
1096	 41.44	+1	1041986..1042774	-	262	159905492	-	MmarC6_1108	-	tetrahydromethanopterin S-methyltransferase subunit C
1097	 43.93	+2	1042813..1043520	-	235	159905493	-	MmarC6_1109	-	tetrahydromethanopterin S-methyltransferase subunit D
1098	 43.00	+2	1043547..1044446	-	299	159905494	-	MmarC6_1110	-	tetrahydromethanopterin S-methyltransferase subunit E
1099	 42.60	+2	1044715..1046376	-	553	159905495	-	MmarC6_1111	-	methyl-coenzyme M reductase, alpha subunit
1100	 40.49	+1	1046423..1047205	-	260	159905496	-	MmarC6_1112	-	methyl-coenzyme M reductase, gamma subunit
1101	 41.04	+1	1047216..1047812	-	198	159905497	-	MmarC6_1113	-	methyl-coenzyme M reductase I operon protein C
1102	 37.08	0	1047820..1048299	-	159	159905498	-	MmarC6_1114	-	methyl-coenzyme M reductase operon protein D
1103	 40.84	+1	1048311..1049642	-	443	159905499	-	MmarC6_1115	-	methyl-coenzyme M reductase, beta subunit
1104	 33.41	0	1049902..1051212	+	436	159905500	-	MmarC6_1116	-	methanogenesis marker protein 10
1105	 27.27	-1	1051205..1051765	-	186	159905501	-	MmarC6_1117	-	hypothetical protein
1106	 32.44	0	1052309..1052866	+	185	159905502	-	MmarC6_1118	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1107	 35.77	0	1052893..1054245	+	450	159905503	-	MmarC6_1119	-	signal recognition particle protein Srp54
1108	 34.82	0	1054593..1055264	-	223	159905504	-	MmarC6_1120	-	NADPH-dependent F420 reductase
1109	 32.34	0	1055283..1056089	-	268	159905505	-	MmarC6_1121	-	xylose isomerase domain-containing protein
1110	 35.24	0	1056167..1056742	+	191	159905506	-	MmarC6_1122	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
1111	 36.83	0	1056828..1057313	-	161	159905507	-	MmarC6_1123	-	30S ribosomal protein S19P
1112	 41.49	+1	1057352..1058074	-	240	159905508	-	MmarC6_1124	-	50S ribosomal protein L2P
1113	 34.10	0	1058115..1058375	-	86	159905509	-	MmarC6_1125	-	50S ribosomal protein L23
1114	 38.08	+1	1058397..1059155	-	252	159905510	-	MmarC6_1126	-	50S ribosomal protein L4P
1115	 39.00	+1	1059186..1060190	-	334	159905511	-	MmarC6_1127	-	50S ribosomal protein L3P
1116	 27.07	-1	1060458..1061048	+	196	159905512	-	MmarC6_1128	-	translin family protein
1117	 33.65	0	1061335..1061652	+	105	159905513	-	MmarC6_1129	-	hypothetical protein
1118	 33.58	0	1061667..1062488	-	273	159905514	-	MmarC6_1130	-	hypothetical protein
1119	 33.33	0	1062485..1063051	-	188	159905515	-	MmarC6_1131	-	hypothetical protein
1120	 41.40	+1	1063113..1063583	-	156	159905516	-	MmarC6_1132	-	transporter component
1121	 40.35	+1	1063605..1064060	-	151	159905517	-	MmarC6_1133	-	cytochrome c heme-binding site
1122	 28.92	-1	1064282..1064893	+	203	159905518	-	MmarC6_1134	-	nucleic acid binding OB-fold tRNA/helicase-type
1123	 31.00	0	1066098..1066655	-	185	159905519	-	MmarC6_1136	-	hypothetical protein
1124	 32.01	0	1066652..1067104	-	150	159905520	-	MmarC6_1137	-	hypothetical protein
1125	 36.06	0	1067475..1068719	+	414	159905521	-	MmarC6_1138	-	phosphoglycerate kinase
1126	 36.28	0	1068847..1069830	+	327	159905522	-	MmarC6_1139	-	methanogenesis marker protein 2
1127	 36.08	0	1069840..1070130	+	96	159905523	-	MmarC6_1140	-	hypothetical protein
1128	 23.49	-2	1070127..1070837	+	236	159905524	-	MmarC6_1141	-	methyltransferase type 11
1129	 33.95	0	1070834..1071643	+	269	159905525	-	MmarC6_1142	-	prephenate dehydratase
1130	 38.05	+1	1071751..1073001	+	416	159905526	-	MmarC6_1143	-	aspartate aminotransferase
1131	 28.70	-1	1073029..1073718	-	229	159905527	-	MmarC6_1144	-	ribonuclease III
1132	 33.89	0	1073769..1075031	-	420	159905528	-	MmarC6_1145	-	peptidase U62 modulator of DNA gyrase
1133	 38.89	+1	1075141..1075986	+	281	159905529	-	MmarC6_1146	-	preprotein translocase subunit SecF
1134	 37.62	0	1076004..1077170	+	388	159905530	-	MmarC6_1147	-	preprotein translocase subunit SecD
1135	 33.63	0	1077222..1078244	+	340	159905531	-	MmarC6_1148	-	hypothetical protein
1136	 32.62	0	1078254..1078673	+	139	159905532	-	MmarC6_1149	-	hypothetical protein
1137	 34.67	0	1078708..1079382	-	224	159905533	-	MmarC6_1150	-	hydrogenase accessory protein HypB
1138	 33.72	0	1079533..1080315	+	260	159905534	-	MmarC6_1151	-	binding-protein-dependent transport systems inner membrane component
1139	 31.31	0	1080328..1081266	+	312	159905535	-	MmarC6_1152	-	ABC transporter related
1140	 35.99	0	1081436..1082038	+	200	159905536	-	MmarC6_1153	-	peptidase M50
1141	 33.78	0	1082057..1082725	+	222	159905537	-	MmarC6_1154	-	chromosome segregation and condensation protein ScpA
1142	 29.72	-1	1082867..1084000	+	377	159905538	-	MmarC6_1155	-	phosphate uptake regulator, PhoU
1143	 31.60	0	1084016..1084246	+	76	159905539	-	MmarC6_1156	-	hypothetical protein
1144	 39.78	+1	1084366..1085994	+	542	159905540	-	MmarC6_1157	-	thermosome
1145	 31.14	0	1086089..1087408	-	439	159905541	-	MmarC6_1158	-	prephenate dehydrogenase
1146	 39.48	+1	1087729..1088850	+	373	159905542	-	MmarC6_1159	-	alanine dehydrogenase
1147	 35.83	0	1088908..1090029	+	373	159905543	-	MmarC6_1160	-	alanine racemase
1148	 41.19	+1	1090244..1091605	+	453	159905544	-	MmarC6_1161	-	amino acid carrier protein
1149	 37.27	0	1091776..1093071	+	431	159905545	-	MmarC6_1162	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1150	 27.64	-1	1093167..1093640	-	157	159905546	-	MmarC6_1163	-	hypothetical protein
1151	 29.78	-1	1093673..1094431	-	252	159905547	-	MmarC6_1164	-	extracellular solute-binding protein
1152	 38.89	+1	1094637..1094978	-	113	159905548	-	MmarC6_1165	-	hypothetical protein
1153	 32.03	0	1094999..1095304	-	101	159905549	-	MmarC6_1166	-	hypothetical protein
1154	 38.42	+1	1095559..1096089	+	176	159905550	-	MmarC6_1167	-	pyruvate ferredoxin oxidoreductase subunit gamma
1155	 34.88	0	1096103..1096360	+	85	159905551	-	MmarC6_1168	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
1156	 37.11	0	1096382..1097545	+	387	159905552	-	MmarC6_1169	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1157	 42.25	+2	1097562..1098458	+	298	159905553	-	MmarC6_1170	-	pyruvate ferredoxin oxidoreductase subunit beta
1158	 38.10	+1	1098480..1098983	+	167	159905554	-	MmarC6_1171	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1159	 37.17	0	1099001..1099417	+	138	159905555	-	MmarC6_1172	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1160	 30.08	-1	1099428..1099919	-	163	159905556	-	MmarC6_1173	-	phosphodiesterase
1161	 38.98	+1	1100486..1101583	+	365	159905557	-	MmarC6_1174	-	cell division protein FtsZ
1162	 34.11	0	1101625..1102137	+	170	159905558	-	MmarC6_1175	-	hypothetical protein
1163	 30.40	0	1102149..1102931	-	260	159905559	-	MmarC6_1176	-	hypothetical protein
1164	 32.71	0	1102928..1103407	-	159	159905560	-	MmarC6_1177	-	hypothetical protein
1165	 32.21	0	1103429..1104937	-	502	159905561	-	MmarC6_1178	-	phenylalanyl-tRNA synthetase subunit alpha
1166	 32.93	0	1105014..1106012	+	332	159905562	-	MmarC6_1179	-	radical SAM family protein
1167	 28.69	-1	1106031..1106633	-	200	159905563	-	MmarC6_1180	-	hypothetical protein
1168	 33.56	0	1106716..1108059	-	447	159905564	-	MmarC6_1181	-	S-layer family protein
1169	 34.23	0	1108166..1108723	+	185	159905565	-	MmarC6_1182	-	orotate phosphoribosyltransferase
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.