IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
973	 34.78	0	933216..933422	-	68	159905369	-	MmarC6_0984	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
974	 36.03	0	933439..934440	-	333	159905370	-	MmarC6_0985	-	H/ACA RNA-protein complex component Cbf5p
975	 25.76	-2	934457..934654	-	65	159905371	-	MmarC6_0986	-	hypothetical protein
976	 40.00	+1	935072..935296	+	74	159905372	-	MmarC6_0987	-	hypothetical protein
977	 32.31	0	935312..935995	+	227	159905373	-	MmarC6_0988	-	metallophosphoesterase
978	 28.50	-1	935997..936638	-	213	159905374	-	MmarC6_0989	-	hypothetical protein
979	 34.26	0	936771..938174	+	467	159905375	-	MmarC6_0990	-	phosphoesterase domain-containing protein
980	 31.31	0	938208..939494	+	428	159905376	-	MmarC6_0991	-	hypothetical protein
981	 32.89	0	939481..941280	-	599	159905377	-	MmarC6_0992	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
982	 36.76	0	941391..941828	+	145	159905378	-	MmarC6_0993	-	hypothetical protein
983	 28.59	-1	941834..942655	-	273	159905379	-	MmarC6_0994	-	xylose isomerase domain-containing protein
984	 28.32	-1	942728..943564	+	278	159905380	-	MmarC6_0995	-	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase
985	 36.97	0	943573..945249	-	558	159905381	-	MmarC6_0996	-	flagellar assembly protein J
986	 37.29	0	945261..946901	-	546	159905382	-	MmarC6_0997	-	type II secretion system protein E
987	 33.33	0	946911..947603	-	230	159905383	-	MmarC6_0998	-	flagellar accessory protein FlaH
988	 36.42	0	947619..948071	-	150	159905384	-	MmarC6_0999	-	flagellar protein G
989	 33.58	0	948117..948524	-	135	159905385	-	MmarC6_1000	-	flagellar protein F
990	 33.82	0	948514..948921	-	135	159905386	-	MmarC6_1001	-	flagella protein
991	 33.54	0	948949..949914	-	321	159905387	-	MmarC6_1002	-	flagella protein
992	 36.54	0	949904..950464	-	186	159905388	-	MmarC6_1003	-	flagella accessory C family protein
993	 37.14	0	950475..951104	-	209	159905389	-	MmarC6_1004	-	flagellin
994	 38.14	+1	951142..951807	-	221	159905390	-	MmarC6_1005	-	flagellin
995	 37.99	+1	951847..952512	-	221	159905391	-	MmarC6_1006	-	flagellin
996	 39.65	+1	952552..953532	-	326	159905392	-	MmarC6_1007	-	flagellin
997	 30.24	0	953837..955516	+	559	159905393	-	MmarC6_1008	-	heat domain-containing protein
998	 33.11	0	955552..956448	-	298	159905394	-	MmarC6_1009	-	hypothetical protein
999	 38.56	+1	956499..957704	+	401	159905395	-	MmarC6_1010	-	hypothetical protein
1000	 36.47	0	957726..958490	+	254	159905396	-	MmarC6_1011	-	precorrin-4 C11-methyltransferase
1001	 27.27	-1	958487..958684	-	65	159905397	-	MmarC6_1012	-	hypothetical protein
1002	 30.30	0	958671..959033	-	120	159905398	-	MmarC6_1013	-	hypothetical protein
1003	 36.30	0	959118..960026	+	302	159905399	-	MmarC6_1014	-	aspartate carbamoyltransferase catalytic subunit
1004	 36.18	0	960185..960571	+	128	159905400	-	MmarC6_1015	-	30S ribosomal protein S8e
1005	 33.08	0	960625..961797	-	390	159905401	-	MmarC6_1016	-	hypothetical protein
1006	 33.87	0	962698..963261	+	187	159905402	-	MmarC6_1017	-	glutamine amidotransferase subunit PdxT
1007	 27.70	-1	963341..966409	-	1022	159905403	-	MmarC6_1018	-	hypothetical protein
1008	 38.79	+1	966729..967772	+	347	159905404	-	MmarC6_1019	-	hypothetical protein
1009	 37.01	0	967815..968657	+	280	159905405	-	MmarC6_1020	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1010	 34.36	0	968648..969430	+	260	159905406	-	MmarC6_1021	-	NifC-like ABC-type porter
1011	 35.31	0	969427..970488	+	353	159905407	-	MmarC6_1022	-	ABC transporter related
1012	 35.35	0	970493..971683	-	396	159905408	-	MmarC6_1023	-	hypothetical protein
1013	 35.46	0	971739..972962	-	407	159905409	-	MmarC6_1024	-	proteasome-activating nucleotidase
1014	 33.54	0	973265..973741	+	158	159905410	-	MmarC6_1025	-	XRE family transcriptional regulator
1015	 30.75	0	973749..974522	-	257	159905411	-	MmarC6_1026	-	aspartate/glutamate/uridylate kinase
1016	 31.48	0	974546..975409	-	287	159905412	-	MmarC6_1027	-	hypothetical protein
1017	 34.11	0	975423..975809	-	128	159905413	-	MmarC6_1028	-	hypothetical protein
1018	 34.95	0	975816..976370	-	184	159905414	-	MmarC6_1029	-	small GTP-binding protein
1019	 33.96	0	976448..977239	+	263	159905415	-	MmarC6_1030	-	hydrolase
1020	 39.57	+1	977245..978462	-	405	159905416	-	MmarC6_1031	-	S-adenosylmethionine synthetase
1021	 25.23	-2	978592..979776	-	394	159905417	-	MmarC6_1032	-	phosphomethylpyrimidine kinase
1022	 30.56	0	979786..980649	-	287	159905418	-	MmarC6_1033	-	radical SAM domain-containing protein
1023	 37.09	0	980846..981538	+	230	159905419	-	MmarC6_1034	-	hypothetical protein
1024	 34.87	0	981550..982920	-	456	159905420	-	MmarC6_1035	-	major facilitator transporter
1025	 39.51	+1	982995..983237	+	80	159905421	-	MmarC6_1036	-	redox-active disulfide protein 1
1026	 37.01	0	983353..984168	+	271	159905422	-	MmarC6_1037	-	DsrE family protein
1027	 33.94	0	984182..984511	+	109	159905423	-	MmarC6_1038	-	hypothetical protein
1028	 29.89	-1	984540..985091	+	183	159905424	-	MmarC6_1039	-	phosphoesterase PA-phosphatase related
1029	 35.45	0	985094..986743	-	549	159905425	-	MmarC6_1040	-	ABC transporter related
1030	 35.29	0	986896..987252	+	118	159905426	-	MmarC6_1041	-	putative monovalent cation/H+ antiporter subunit C
1031	 37.54	0	987279..988727	+	482	159905427	-	MmarC6_1042	-	hydrogenase subunit F
1032	 33.66	0	988745..989053	+	102	159905428	-	MmarC6_1043	-	hypothetical protein
1033	 34.65	0	989063..989824	+	253	159905429	-	MmarC6_1044	-	putative monovalent cation/H+ antiporter subunit B
1034	 32.57	0	989836..990096	+	86	159905430	-	MmarC6_1045	-	hypothetical protein
1035	 36.24	0	990098..991543	+	481	159905431	-	MmarC6_1046	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1036	 34.50	0	991563..992075	+	170	159905432	-	MmarC6_1047	-	ferredoxin
1037	 38.51	+1	992085..992528	+	147	159905433	-	MmarC6_1048	-	NADH ubiquinone oxidoreductase 20 kDa subunit
1038	 35.54	0	992539..993534	+	331	159905434	-	MmarC6_1049	-	energy conserving hydrogenase B integral membrane subunit
1039	 31.63	0	993591..993884	-	97	159905435	-	MmarC6_1050	-	hypothetical protein
1040	 34.41	0	993897..995105	-	402	159905436	-	MmarC6_1051	-	molybdenum cofactor synthesis domain-containing protein
1041	 34.37	0	995243..996208	+	321	159905437	-	MmarC6_1052	-	aIF-2BI family translation initiation factor
1042	 36.98	0	996420..997736	+	438	159905438	-	MmarC6_1053	-	aspartyl-tRNA synthetase
1043	 40.00	+1	997824..998123	+	99	159905439	-	MmarC6_1054	-	hypothetical protein
1044	 33.09	0	998179..999435	+	418	159905440	-	MmarC6_1055	-	histidyl-tRNA synthetase
1045	 37.04	0	999464..999733	-	89	159905441	-	MmarC6_1056	-	chromatin protein
1046	 30.38	0	999845..1000522	+	225	159905442	-	MmarC6_1057	-	protein of unknown function RIO1
1047	 37.18	0	1000546..1001298	+	250	159905443	-	MmarC6_1058	-	hypothetical protein
1048	 34.96	0	1001316..1001990	-	224	159905444	-	MmarC6_1059	-	hypothetical protein
1049	 40.15	+1	1002059..1002967	-	302	159905445	-	MmarC6_1060	-	tetrahydromethanopterin formyltransferase
1050	 35.92	0	1003269..1003577	-	102	159905446	-	MmarC6_1061	-	hypothetical protein
1051	 28.80	-1	1003826..1004377	-	183	159905447	-	MmarC6_1063	-	hypothetical protein
1052	 31.99	0	1004387..1005577	-	396	159905448	-	MmarC6_1064	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1053	 31.55	0	1005608..1006951	-	447	159905449	-	MmarC6_1065	-	pyruvate kinase
1054	 31.86	0	1007064..1007945	+	293	159905450	-	MmarC6_1066	-	hypothetical protein
1055	 35.13	0	1007970..1009136	-	388	159905451	-	MmarC6_1067	-	methanogenesis marker 16 metalloprotein
1056	 25.88	-2	1009409..1009636	+	75	159905452	-	MmarC6_1068	-	hypothetical protein
1057	 33.33	0	1009744..1010526	+	260	159905453	-	MmarC6_1069	-	methyltransferase small
1058	 29.38	-1	1010535..1011344	+	269	159905454	-	MmarC6_1070	-	alpha-L-glutamate ligase
1059	 38.74	+1	1011374..1012039	-	221	159905455	-	MmarC6_1071	-	TrkA domain-containing protein
1060	 29.26	-1	1012044..1012607	-	187	159905456	-	MmarC6_1072	-	hypothetical protein
1061	 34.56	0	1012690..1013178	-	162	159905457	-	MmarC6_1073	-	phosphatidylglycerophosphatase A
1062	 28.93	-1	1013198..1013788	+	196	159905458	-	MmarC6_1074	-	hypothetical protein
1063	 33.64	0	1013873..1015489	+	538	159905459	-	MmarC6_1075	-	PUA domain-containing protein
1064	 31.11	0	1015562..1016101	+	179	159905460	-	MmarC6_1076	-	hypothetical protein
1065	 37.09	0	1016115..1017020	+	301	159905461	-	MmarC6_1077	-	methanogenesis marker protein 11
1066	 36.68	0	1017048..1018124	+	358	159905462	-	MmarC6_1078	-	tryptophanyl-tRNA synthetase
1067	 27.26	-1	1018162..1019133	+	323	159905463	-	MmarC6_1079	-	cobalamin (vitamin B12) biosynthesis CbiG protein
1068	 29.52	-1	1019134..1019919	-	261	159905464	-	MmarC6_1080	-	ExsB family protein
1069	 38.42	+1	1020004..1021104	-	366	159905465	-	MmarC6_1081	-	carbamoyl phosphate synthase small subunit
1070	 38.23	+1	1021249..1022820	+	523	159905466	-	MmarC6_1082	-	D-3-phosphoglycerate dehydrogenase
1071	 36.47	0	1022847..1023260	+	137	159905467	-	MmarC6_1083	-	hypothetical protein
1072	 33.78	0	1023283..1023507	-	74	159905468	-	MmarC6_1084	-	hypothetical protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.