IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.95   STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
832	 28.09	-1	810537..811508	-	323	150402762	-	MmarC7_0838	-	cobalamin (vitamin B12) biosynthesis CbiG protein
833	 36.31	0	811548..812621	-	357	150402763	-	MmarC7_0839	-	tryptophanyl-tRNA synthetase
834	 36.42	0	812649..813554	-	301	150402764	-	MmarC7_0840	-	hypothetical protein
835	 30.93	0	813566..814105	-	179	150402765	-	MmarC7_0841	-	hypothetical protein
836	 32.41	0	814167..815783	-	538	150402766	-	MmarC7_0842	-	PUA domain-containing protein
837	 28.09	-1	815861..816451	-	196	150402767	-	MmarC7_0843	-	hypothetical protein
838	 34.15	0	816470..816958	+	162	150402768	-	MmarC7_0844	-	phosphatidylglycerophosphatase A
839	 29.73	-1	817035..817589	+	184	150402769	-	MmarC7_0845	-	hypothetical protein
840	 37.39	0	817604..818269	+	221	150402770	-	MmarC7_0846	-	TrkA domain-containing protein
841	 30.62	0	818300..819109	-	269	150402771	-	MmarC7_0847	-	alpha-L-glutamate ligase
842	 32.44	0	819118..819900	-	260	150402772	-	MmarC7_0848	-	putative RNA methylase
843	 25.44	-2	820022..820249	-	75	150402773	-	MmarC7_0849	-	hypothetical protein
844	 34.62	0	820529..821695	+	388	150402774	-	MmarC7_0850	-	hypothetical protein
845	 31.26	0	821721..822590	-	289	150402775	-	MmarC7_0851	-	hypothetical protein
846	 31.51	0	822810..823688	-	292	150402776	-	MmarC7_0852	-	hypothetical protein
847	 30.51	0	823790..825133	+	447	150402777	-	MmarC7_0853	-	pyruvate kinase
848	 32.24	0	825164..826354	+	396	150402778	-	MmarC7_0854	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
849	 27.17	-1	826365..826916	+	183	150402779	-	MmarC7_0855	-	hypothetical protein
850	 36.89	0	827040..827348	+	102	150402780	-	MmarC7_0856	-	hypothetical protein
851	 40.48	+1	827650..828558	+	302	150402781	-	MmarC7_0857	-	tetrahydromethanopterin formyltransferase
852	 34.81	0	828625..829299	+	224	150402782	-	MmarC7_0858	-	hypothetical protein
853	 36.65	0	829318..830070	-	250	150402783	-	MmarC7_0859	-	hypothetical protein
854	 29.79	-1	830094..830771	-	225	150402784	-	MmarC7_0860	-	putative serine/threonine protein kinase
855	 36.30	0	830883..831152	+	89	150402785	-	MmarC7_0861	-	chromatin protein
856	 32.86	0	831179..832435	-	418	150402786	hisS	MmarC7_0862	-	histidyl-tRNA synthetase
857	 38.00	+1	832491..832790	-	99	150402787	-	MmarC7_0863	-	hypothetical protein
858	 37.89	+1	832878..834194	-	438	150402788	aspC	MmarC7_0864	-	aspartyl-tRNA synthetase
859	 35.20	0	834399..835364	-	321	150402789	-	MmarC7_0865	-	aIF-2BI family translation initiation factor
860	 34.33	0	835503..836711	+	402	150402790	-	MmarC7_0866	-	molybdenum cofactor synthesis domain-containing protein
861	 30.95	0	836724..837017	+	97	150402791	-	MmarC7_0867	-	hypothetical protein
862	 35.94	0	837077..838072	-	331	150402792	-	MmarC7_0868	-	energy conserving hydrogenase B integral membrane subunit
863	 40.99	+1	838081..838524	-	147	150402793	-	MmarC7_0869	-	NADH ubiquinone oxidoreductase 20 kDa subunit
864	 34.70	0	838534..839046	-	170	150402794	-	MmarC7_0870	-	ferredoxin
865	 35.27	0	839066..840511	-	481	150402795	-	MmarC7_0871	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
866	 31.80	0	840513..840773	-	86	150402796	-	MmarC7_0872	-	hypothetical protein
867	 34.51	0	840785..841546	-	253	150402797	-	MmarC7_0873	-	putative monovalent cation/H+ antiporter subunit B
868	 33.66	0	841556..841864	-	102	150402798	-	MmarC7_0874	-	hypothetical protein
869	 37.06	0	841882..843330	-	482	150402799	-	MmarC7_0875	-	hydrogenase subunit F
870	 34.73	0	843357..843713	-	118	150402800	-	MmarC7_0876	-	putative monovalent cation/H+ antiporter subunit C
871	 34.79	0	844327..845976	+	549	150402801	-	MmarC7_0877	-	ABC transporter related
872	 30.05	-1	845979..846527	-	182	150402802	-	MmarC7_0878	-	phosphoesterase PA-phosphatase related
873	 30.43	0	846667..847218	+	183	150402803	-	MmarC7_0879	-	hypothetical protein
874	 28.65	-1	847208..848083	+	291	150402804	-	MmarC7_0880	-	phage integrase family protein
875	 27.11	-1	848148..848870	-	240	150402805	-	MmarC7_0881	-	hypothetical protein
876	 25.25	-2	849035..849430	-	131	150402806	-	MmarC7_0882	-	hypothetical protein
877	 28.35	-1	849726..850748	-	340	150402807	-	MmarC7_0883	-	hypothetical protein
878	 26.82	-1	850919..851854	+	311	150402808	-	MmarC7_0884	-	hypothetical protein
879	 27.47	-1	851949..853961	-	670	150402809	-	MmarC7_0885	-	hypothetical protein
880	 24.93	-2	854078..854434	-	118	150402810	-	MmarC7_0886	-	hypothetical protein
881	 37.12	0	854673..854804	+	43	150402811	-	MmarC7_0887	-	hypothetical protein
882	 33.66	0	854805..855107	+	100	150402812	-	MmarC7_0888	-	hypothetical protein
883	 33.15	0	855100..855630	+	176	150402813	-	MmarC7_0889	-	hypothetical protein
884	 34.36	0	855647..857005	+	452	150402814	-	MmarC7_0890	-	hypothetical protein
885	 35.78	0	857017..857220	+	67	150402815	-	MmarC7_0891	-	hypothetical protein
886	 31.58	0	857192..857476	+	94	150402816	-	MmarC7_0892	-	hypothetical protein
887	 28.76	-1	857867..858325	+	152	150402817	-	MmarC7_0893	-	hypothetical protein
888	 25.76	-2	858345..858740	+	131	150402818	-	MmarC7_0894	-	hypothetical protein
889	 31.55	0	858746..859081	+	111	150402819	-	MmarC7_0895	-	hypothetical protein
890	 31.08	0	859078..860541	+	487	150402820	-	MmarC7_0896	-	hypothetical protein
891	 29.05	-1	860528..860737	+	69	150402821	-	MmarC7_0897	-	hypothetical protein
892	 28.87	-1	860730..861311	+	193	150402822	-	MmarC7_0898	-	hypothetical protein
893	 31.80	0	861445..861771	+	108	150402823	-	MmarC7_0899	-	hypothetical protein
894	 36.44	0	861777..862226	+	149	150402824	-	MmarC7_0900	-	hypothetical protein
895	 37.90	+1	862239..862610	+	123	150402825	-	MmarC7_0901	-	hypothetical protein
896	 32.50	0	862614..863330	+	238	150402826	-	MmarC7_0902	-	hypothetical protein
897	 32.43	0	863346..865007	+	553	150402827	-	MmarC7_0903	-	hypothetical protein
898	 33.54	0	864994..866961	+	655	150402828	-	MmarC7_0904	-	hypothetical protein
899	 25.48	-2	867134..867808	+	224	150402829	-	MmarC7_0905	-	hypothetical protein
900	 34.52	0	868675..869010	-	111	150402830	-	MmarC7_0906	-	hypothetical protein
901	 37.75	+1	869024..869839	-	271	150402831	-	MmarC7_0907	-	DsrE family protein
902	 38.68	+1	869954..870196	-	80	150402832	-	MmarC7_0908	-	redox-active disulfide protein 1
903	 34.35	0	870271..871641	+	456	150402833	-	MmarC7_0909	-	major facilitator transporter
904	 37.52	0	871652..872344	-	230	150402834	-	MmarC7_0910	-	hypothetical protein
905	 30.67	0	872541..873404	+	287	150402835	-	MmarC7_0911	-	radical SAM domain-containing protein
906	 26.33	-2	873414..874598	+	394	150402836	-	MmarC7_0912	-	phosphomethylpyrimidine kinase
907	 39.49	+1	874728..875945	+	405	150402837	-	MmarC7_0913	-	S-adenosylmethionine synthetase
908	 33.59	0	875951..876742	-	263	150402838	-	MmarC7_0914	-	hydrolase
909	 34.41	0	876819..877373	+	184	150402839	-	MmarC7_0915	-	small GTP-binding protein
910	 34.63	0	877380..877766	+	128	150402840	-	MmarC7_0916	-	hypothetical protein
911	 32.98	0	877793..878644	+	283	150402841	-	MmarC7_0917	-	hypothetical protein
912	 32.43	0	878668..879441	+	257	150402842	-	MmarC7_0918	-	aspartate/glutamate/uridylate kinase
913	 34.80	0	879449..879925	-	158	150402843	-	MmarC7_0919	-	helix-turn-helix domain-containing protein
914	 35.29	0	880227..881450	+	407	150402844	-	MmarC7_0920	-	proteasome-activating nucleotidase
915	 35.68	0	881505..882695	+	396	150402845	-	MmarC7_0921	-	hypothetical protein
916	 34.09	0	882700..883761	-	353	150402846	-	MmarC7_0922	-	ABC transporter related
917	 34.74	0	883758..884540	-	260	150402847	-	MmarC7_0923	-	NifC-like ABC-type porter
918	 38.18	+1	884531..885334	-	267	150402848	-	MmarC7_0924	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
919	 39.13	+1	885416..886450	-	344	150402849	-	MmarC7_0925	-	hypothetical protein
920	 29.00	-1	886762..889827	+	1021	150402850	-	MmarC7_0926	-	hypothetical protein
921	 27.09	-1	889847..892939	+	1030	150402851	-	MmarC7_0927	-	hypothetical protein
922	 34.40	0	892941..893504	-	187	150402852	-	MmarC7_0928	-	glutamine amidotransferase subunit PdxT
923	 33.16	0	894403..895575	+	390	150402853	-	MmarC7_0929	-	hypothetical protein
924	 37.73	+1	895629..896015	-	128	150402854	-	MmarC7_0930	-	30S ribosomal protein S8e
925	 35.42	0	896176..897084	-	302	150402855	pyrB	MmarC7_0931	-	aspartate carbamoyltransferase catalytic subunit
926	 30.30	0	897169..897531	+	120	150402856	-	MmarC7_0932	-	hypothetical protein
927	 25.25	-2	897518..897715	+	65	150402857	-	MmarC7_0933	-	hypothetical protein
928	 36.99	0	897712..898476	-	254	150402858	-	MmarC7_0934	-	precorrin-4 C11-methyltransferase
929	 37.56	0	898498..899703	-	401	150402859	-	MmarC7_0935	-	hypothetical protein
930	 33.33	0	899730..900650	+	306	150402860	-	MmarC7_0936	-	hypothetical protein
931	 30.95	0	900674..902353	-	559	150402861	-	MmarC7_0937	-	heat domain-containing protein
33.95	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.