IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
765	 36.50	0	753292..754458	-	388	150402695	secD	MmarC7_0771	-	preprotein translocase subunit SecD
766	 38.06	+1	754476..755321	-	281	150402696	-	MmarC7_0772	-	preprotein translocase subunit SecF
767	 33.03	0	755386..756693	+	435	150402697	-	MmarC7_0773	-	peptidase U62 modulator of DNA gyrase
768	 29.13	-1	756746..757435	+	229	150402698	-	MmarC7_0774	-	ribonuclease III
769	 38.77	+1	757460..758710	-	416	150402699	-	MmarC7_0775	-	aspartate aminotransferase
770	 33.58	0	758818..759627	-	269	150402700	-	MmarC7_0776	-	prephenate dehydratase
771	 24.05	-2	759624..760334	-	236	150402701	-	MmarC7_0777	-	methyltransferase type 11
772	 34.71	0	760331..760621	-	96	150402702	-	MmarC7_0778	-	hypothetical protein
773	 36.52	0	760631..761602	-	323	150402703	-	MmarC7_0779	-	AIR synthase related protein
774	 36.95	0	761741..762985	-	414	150402704	pgk	MmarC7_0780	-	phosphoglycerate kinase
775	 33.55	0	763360..763812	+	150	150402705	-	MmarC7_0781	-	hypothetical protein
776	 32.05	0	763821..764366	+	181	150402706	-	MmarC7_0782	-	nucleotide kinase
777	 28.32	-1	764373..765569	-	398	150402707	-	MmarC7_0783	-	hypothetical protein
778	 27.29	-1	765570..766181	-	203	150402708	-	MmarC7_0784	-	nucleic acid binding OB-fold tRNA/helicase-type
779	 38.38	+1	766389..766844	+	151	150402709	-	MmarC7_0785	-	cytochrome c heme-binding site
780	 41.19	+1	766866..767336	+	156	150402710	-	MmarC7_0786	-	transporter component
781	 32.80	0	767398..767958	+	186	150402711	-	MmarC7_0787	-	hypothetical protein
782	 34.06	0	767955..768776	+	273	150402712	-	MmarC7_0788	-	hypothetical protein
783	 34.28	0	768791..769108	-	105	150402713	-	MmarC7_0789	-	hypothetical protein
784	 29.10	-1	769397..769987	-	196	150402714	-	MmarC7_0790	-	translin family protein
785	 38.21	+1	770255..771259	+	334	150402715	rpl3p	MmarC7_0791	-	50S ribosomal protein L3P
786	 36.63	0	771290..772048	+	252	150402716	rpl4lp	MmarC7_0792	-	50S ribosomal protein L4P
787	 33.72	0	772070..772330	+	86	150402717	rplW	MmarC7_0793	-	50S ribosomal protein L23
788	 41.77	+2	772371..773093	+	240	150402718	rpl2p	MmarC7_0794	-	50S ribosomal protein L2P
789	 36.21	0	773132..773617	+	161	150402719	rps19p	MmarC7_0795	-	30S ribosomal protein S19P
790	 36.28	0	773703..774278	-	191	150402720	-	MmarC7_0796	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
791	 32.47	0	774358..775164	+	268	150402721	-	MmarC7_0797	-	xylose isomerase domain-containing protein
792	 33.78	0	775186..775857	+	223	150402722	-	MmarC7_0798	-	NADPH-dependent F420 reductase
793	 35.85	0	775939..777291	-	450	150402723	-	MmarC7_0799	-	signal recognition particle protein Srp54
794	 32.44	0	777318..777875	-	185	150402724	-	MmarC7_0800	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
795	 33.56	0	778440..779750	-	436	150402725	-	MmarC7_0801	-	hypothetical protein
796	 40.84	+1	780010..781341	+	443	150402726	-	MmarC7_0802	-	coenzyme-B sulfoethylthiotransferase
797	 38.54	+1	781353..781832	+	159	150402727	-	MmarC7_0803	-	methyl-coenzyme M reductase, protein D
798	 40.37	+1	781841..782437	+	198	150402728	-	MmarC7_0804	-	methyl-coenzyme M reductase operon protein C
799	 40.36	+1	782448..783230	+	260	150402729	-	MmarC7_0805	-	methyl-coenzyme M reductase, gamma subunit
800	 42.36	+2	783277..784938	+	553	150402730	-	MmarC7_0806	-	coenzyme-B sulfoethylthiotransferase
801	 42.33	+2	785208..786107	+	299	150402731	-	MmarC7_0807	-	tetrahydromethanopterin S-methyltransferase subunit E
802	 44.21	+2	786134..786841	+	235	150402732	-	MmarC7_0808	-	tetrahydromethanopterin S-methyltransferase subunit D
803	 40.81	+1	786879..787667	+	262	150402733	-	MmarC7_0809	-	tetrahydromethanopterin S-methyltransferase subunit C
804	 36.39	0	787678..788004	+	108	150402734	-	MmarC7_0810	-	tetrahydromethanopterin S-methyltransferase subunit B
805	 39.31	+1	788026..788745	+	239	150402735	-	MmarC7_0811	-	tetrahydromethanopterin S-methyltransferase subunit A
806	 40.81	+1	788762..789523	+	253	150402736	-	MmarC7_0812	-	tetrahydromethanopterin S-methyltransferase subunit A
807	 36.89	0	789528..789752	+	74	150402737	-	MmarC7_0813	-	tetrahydromethanopterin S-methyltransferase subunit G
808	 40.62	+1	789777..790736	+	319	150402738	-	MmarC7_0814	-	tetrahydromethanopterin S-methyltransferase subunit H
809	 32.77	0	790821..791357	-	178	150402739	-	MmarC7_0815	-	hypothetical protein
810	 37.22	0	791332..791640	-	102	150402740	-	MmarC7_0816	-	hypothetical protein
811	 31.75	0	791651..792406	-	251	150402741	-	MmarC7_0817	-	TatD family hydrolase
812	 31.01	0	792415..793359	-	314	150402742	-	MmarC7_0818	-	nucleoside recognition domain-containing protein
813	 25.25	-2	793448..793744	+	98	150402743	-	MmarC7_0819	-	hypothetical protein
814	 31.37	0	793774..794334	-	186	150402744	-	MmarC7_0820	-	dethiobiotin synthase
815	 31.27	0	794409..795521	-	370	150402745	-	MmarC7_0821	-	8-amino-7-oxononanoate synthase
816	 31.02	0	795530..796264	-	244	150402746	-	MmarC7_0822	-	6-carboxyhexanoate--CoA ligase
817	 31.41	0	796450..796605	+	51	150402747	-	MmarC7_0823	-	hypothetical protein
818	 36.72	0	796619..798244	-	541	150402748	-	MmarC7_0824	-	ELP3 family histone acetyltransferase
819	 34.30	0	798376..798891	+	171	150402749	-	MmarC7_0825	-	nicotinamide-nucleotide adenylyltransferase
820	 37.94	+1	799021..799476	+	151	150402750	rps15p	MmarC7_0826	-	30S ribosomal protein S15P
821	 29.83	-1	799547..801118	-	523	150402751	-	MmarC7_0827	-	dihydropteroate synthase-related protein
822	 32.44	0	801238..803139	+	633	150402752	-	MmarC7_0828	-	putative DNA helicase
823	 42.22	+2	803321..803815	+	164	150402753	-	MmarC7_0829	-	pyruvoyl-dependent arginine decarboxylase
824	 41.46	+2	803943..804311	+	122	150402754	-	MmarC7_0830	-	S-adenosylmethionine decarboxylase related
825	 38.32	+1	804308..805150	+	280	150402755	-	MmarC7_0831	-	spermidine synthase
826	 36.16	0	805191..806039	+	282	150402756	-	MmarC7_0832	-	putative agmatinase
827	 33.74	0	806142..806384	+	80	150402757	-	MmarC7_0833	-	hypothetical protein
828	 35.27	0	806407..806820	-	137	150402758	-	MmarC7_0834	-	hypothetical protein
829	 37.34	0	806848..808419	-	523	150402759	-	MmarC7_0835	-	D-3-phosphoglycerate dehydrogenase
830	 38.06	+1	808564..809664	+	366	150402760	-	MmarC7_0836	-	carbamoyl phosphate synthase small subunit
831	 30.41	0	809751..810536	+	261	150402761	-	MmarC7_0837	-	ExsB family protein
832	 28.09	-1	810537..811508	-	323	150402762	-	MmarC7_0838	-	cobalamin (vitamin B12) biosynthesis CbiG protein
833	 36.31	0	811548..812621	-	357	150402763	-	MmarC7_0839	-	tryptophanyl-tRNA synthetase
834	 36.42	0	812649..813554	-	301	150402764	-	MmarC7_0840	-	hypothetical protein
835	 30.93	0	813566..814105	-	179	150402765	-	MmarC7_0841	-	hypothetical protein
836	 32.41	0	814167..815783	-	538	150402766	-	MmarC7_0842	-	PUA domain-containing protein
837	 28.09	-1	815861..816451	-	196	150402767	-	MmarC7_0843	-	hypothetical protein
838	 34.15	0	816470..816958	+	162	150402768	-	MmarC7_0844	-	phosphatidylglycerophosphatase A
839	 29.73	-1	817035..817589	+	184	150402769	-	MmarC7_0845	-	hypothetical protein
840	 37.39	0	817604..818269	+	221	150402770	-	MmarC7_0846	-	TrkA domain-containing protein
841	 30.62	0	818300..819109	-	269	150402771	-	MmarC7_0847	-	alpha-L-glutamate ligase
842	 32.44	0	819118..819900	-	260	150402772	-	MmarC7_0848	-	putative RNA methylase
843	 25.44	-2	820022..820249	-	75	150402773	-	MmarC7_0849	-	hypothetical protein
844	 34.62	0	820529..821695	+	388	150402774	-	MmarC7_0850	-	hypothetical protein
845	 31.26	0	821721..822590	-	289	150402775	-	MmarC7_0851	-	hypothetical protein
846	 31.51	0	822810..823688	-	292	150402776	-	MmarC7_0852	-	hypothetical protein
847	 30.51	0	823790..825133	+	447	150402777	-	MmarC7_0853	-	pyruvate kinase
848	 32.24	0	825164..826354	+	396	150402778	-	MmarC7_0854	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
849	 27.17	-1	826365..826916	+	183	150402779	-	MmarC7_0855	-	hypothetical protein
850	 36.89	0	827040..827348	+	102	150402780	-	MmarC7_0856	-	hypothetical protein
851	 40.48	+1	827650..828558	+	302	150402781	-	MmarC7_0857	-	tetrahydromethanopterin formyltransferase
852	 34.81	0	828625..829299	+	224	150402782	-	MmarC7_0858	-	hypothetical protein
853	 36.65	0	829318..830070	-	250	150402783	-	MmarC7_0859	-	hypothetical protein
854	 29.79	-1	830094..830771	-	225	150402784	-	MmarC7_0860	-	putative serine/threonine protein kinase
855	 36.30	0	830883..831152	+	89	150402785	-	MmarC7_0861	-	chromatin protein
856	 32.86	0	831179..832435	-	418	150402786	hisS	MmarC7_0862	-	histidyl-tRNA synthetase
857	 38.00	+1	832491..832790	-	99	150402787	-	MmarC7_0863	-	hypothetical protein
858	 37.89	+1	832878..834194	-	438	150402788	aspC	MmarC7_0864	-	aspartyl-tRNA synthetase
859	 35.20	0	834399..835364	-	321	150402789	-	MmarC7_0865	-	aIF-2BI family translation initiation factor
860	 34.33	0	835503..836711	+	402	150402790	-	MmarC7_0866	-	molybdenum cofactor synthesis domain-containing protein
861	 30.95	0	836724..837017	+	97	150402791	-	MmarC7_0867	-	hypothetical protein
862	 35.94	0	837077..838072	-	331	150402792	-	MmarC7_0868	-	energy conserving hydrogenase B integral membrane subunit
863	 40.99	+1	838081..838524	-	147	150402793	-	MmarC7_0869	-	NADH ubiquinone oxidoreductase 20 kDa subunit
864	 34.70	0	838534..839046	-	170	150402794	-	MmarC7_0870	-	ferredoxin
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.