IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
689	 37.78	+1	687427..687696	+	89	150402619	-	MmarC7_0695	-	hypothetical protein
690	 34.05	0	687702..687980	+	92	150402620	-	MmarC7_0696	-	hypothetical protein
691	 38.43	+1	687989..688243	+	84	150402621	-	MmarC7_0697	-	hypothetical protein
692	 37.15	0	688245..688715	+	156	150402622	-	MmarC7_0698	-	hypothetical protein
693	 36.39	0	688715..689401	+	228	150402623	-	MmarC7_0699	-	hypothetical protein
694	 37.41	0	689423..690085	+	220	150402624	-	MmarC7_0700	-	putative transmembrane subunit of a hydrogenase
695	 36.19	0	690095..690304	+	69	150402625	-	MmarC7_0701	-	hypothetical protein
696	 39.02	+1	690324..691184	+	286	150402626	-	MmarC7_0702	-	NADH dehydrogenase (ubiquinone)
697	 32.14	0	691193..691444	+	83	150402627	-	MmarC7_0703	-	hypothetical protein
698	 40.67	+1	691449..691748	+	99	150402628	-	MmarC7_0704	-	hypothetical protein
699	 35.28	0	691764..692174	+	136	150402629	-	MmarC7_0705	-	(NiFe)-hydrogenase-3-type complex Eha, EhaM
700	 39.70	+1	692196..692666	+	156	150402630	-	MmarC7_0706	-	NADH ubiquinone oxidoreductase 20 kDa subunit
701	 37.50	0	692681..693808	+	375	150402631	-	MmarC7_0707	-	NADH dehydrogenase (quinone)
702	 34.60	0	693837..695018	+	393	150402632	-	MmarC7_0708	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
703	 31.69	0	695011..695496	+	161	150402633	-	MmarC7_0709	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
704	 35.57	0	695517..696275	+	252	150402634	-	MmarC7_0710	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
705	 33.18	0	696291..696932	+	213	150402635	-	MmarC7_0711	-	signal transduction protein
706	 29.80	-1	696953..697348	+	131	150402636	-	MmarC7_0712	-	helix-turn-helix type 11 domain-containing protein
707	 31.66	0	697360..698553	-	397	150402637	-	MmarC7_0713	-	hypothetical protein
708	 33.00	0	698604..698906	-	100	150402638	-	MmarC7_0714	-	putative monovalent cation/H+ antiporter subunit E
709	 35.40	0	699100..699534	+	144	150402639	-	MmarC7_0715	-	prefoldin, alpha subunit
710	 30.67	0	699841..700890	+	349	150402640	-	MmarC7_0716	-	hypothetical protein
711	 36.01	0	700906..701577	+	223	150402641	-	MmarC7_0717	-	hypothetical protein
712	 36.20	0	701634..702017	+	127	150402642	-	MmarC7_0718	-	hypothetical protein
713	 34.75	0	702057..705161	+	1034	150402643	ileS	MmarC7_0719	-	isoleucyl-tRNA synthetase
714	 32.49	0	705197..706027	-	276	150402644	-	MmarC7_0720	-	hypothetical protein
715	 27.37	-1	706136..706873	-	245	150402645	-	MmarC7_0721	-	hypothetical protein
716	 33.26	0	706989..708332	+	447	150402646	-	MmarC7_0722	-	cobyrinic acid a,c-diamide synthase
717	 32.58	0	708347..709279	+	310	150402647	-	MmarC7_0723	-	hypothetical protein
718	 37.71	+1	709390..710646	+	418	150402648	-	MmarC7_0724	-	homoaconitate hydratase family protein
719	 38.79	+1	710839..711516	+	225	150402649	-	MmarC7_0725	-	cobalt transport protein CbiM
720	 38.78	+1	711516..711809	+	97	150402650	-	MmarC7_0726	-	cobalt transport protein CbiN
721	 32.69	0	711823..712596	+	257	150402651	-	MmarC7_0727	-	cobalt ABC transporter, inner membrane subunit CbiQ
722	 36.64	0	712659..713504	+	281	150402652	-	MmarC7_0728	-	cobalt transporter ATP-binding subunit
723	 31.28	0	713497..713982	+	161	150402653	-	MmarC7_0729	-	molybdenum cofactor synthesis domain-containing protein
724	 36.94	0	714004..714807	-	267	150402654	-	MmarC7_0730	-	MscS mechanosensitive ion channel
725	 33.91	0	714944..716341	+	465	150402655	-	MmarC7_0731	-	aldehyde dehydrogenase
726	 35.37	0	716386..717762	+	458	150402656	-	MmarC7_0732	-	peptidase U62 modulator of DNA gyrase
727	 34.10	0	717954..719654	-	566	150402657	-	MmarC7_0733	-	ATP-NAD/AcoX kinase
728	 27.00	-1	719743..720516	+	257	150402658	-	MmarC7_0734	-	chromatin associated protein KTI12
729	 33.41	0	720525..721793	-	422	150402659	-	MmarC7_0735	-	amidohydrolase
730	 32.97	0	721829..722386	-	185	150402660	-	MmarC7_0736	-	orotate phosphoribosyltransferase
731	 33.04	0	722493..723836	+	447	150402661	-	MmarC7_0737	-	hypothetical protein
732	 29.52	-1	723934..724536	+	200	150402662	-	MmarC7_0738	-	hypothetical protein
733	 32.43	0	724554..725552	-	332	150402663	-	MmarC7_0739	-	radical SAM family protein
734	 33.00	0	725632..727137	+	501	150402664	pheS	MmarC7_0740	-	phenylalanyl-tRNA synthetase subunit alpha
735	 32.71	0	727162..727641	+	159	150402665	-	MmarC7_0741	-	hypothetical protein
736	 30.52	0	727638..728420	+	260	150402666	-	MmarC7_0742	-	hypothetical protein
737	 34.11	0	728428..728940	-	170	150402667	-	MmarC7_0743	-	hypothetical protein
738	 39.16	+1	728980..730077	-	365	150402668	-	MmarC7_0744	-	cell division protein FtsZ
739	 29.27	-1	730640..731131	+	163	150402669	-	MmarC7_0745	-	phosphodiesterase
740	 35.01	0	731142..731558	-	138	150402670	-	MmarC7_0746	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
741	 37.70	+1	731576..732079	-	167	150402671	-	MmarC7_0747	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
742	 42.59	+2	732104..733000	-	298	150402672	-	MmarC7_0748	-	pyruvate ferredoxin oxidoreductase subunit beta
743	 36.86	0	733017..734180	-	387	150402673	-	MmarC7_0749	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
744	 33.33	0	734202..734459	-	85	150402674	-	MmarC7_0750	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
745	 38.79	+1	734473..735003	-	176	150402675	-	MmarC7_0751	-	pyruvate ferredoxin oxidoreductase subunit gamma
746	 34.31	0	735254..735559	+	101	150402676	-	MmarC7_0752	-	hypothetical protein
747	 36.55	0	735580..735921	+	113	150402677	-	MmarC7_0753	-	hypothetical protein
748	 29.38	-1	736135..736893	+	252	150402678	-	MmarC7_0754	-	extracellular solute-binding protein
749	 25.11	-2	736944..737417	+	157	150402679	-	MmarC7_0755	-	hypothetical protein
750	 37.89	+1	737428..738723	-	431	150402680	gatA	MmarC7_0756	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
751	 41.12	+1	738885..740246	-	453	150402681	-	MmarC7_0757	-	amino acid carrier protein
752	 35.65	0	740461..741582	-	373	150402682	-	MmarC7_0758	-	alanine racemase
753	 38.68	+1	741640..742761	-	373	150402683	-	MmarC7_0759	-	alanine dehydrogenase
754	 30.63	0	743062..744393	+	443	150402684	-	MmarC7_0760	-	prephenate dehydrogenase
755	 40.27	+1	744486..746114	-	542	150402685	-	MmarC7_0761	-	thermosome
756	 29.00	-1	746234..746464	-	76	150402686	-	MmarC7_0762	-	hypothetical protein
757	 29.39	-1	746479..747594	-	371	150402687	-	MmarC7_0763	-	hypothetical protein
758	 33.48	0	747763..748431	-	222	150402688	-	MmarC7_0764	-	chromosome segregation and condensation protein ScpA
759	 34.83	0	748450..749052	-	200	150402689	-	MmarC7_0765	-	peptidase M50
760	 31.74	0	749214..750152	-	312	150402690	-	MmarC7_0766	-	ABC transporter related
761	 34.24	0	750165..750932	-	255	150402691	-	MmarC7_0767	-	binding-protein-dependent transport systems inner membrane component
762	 33.33	0	751095..751769	+	224	150402692	-	MmarC7_0768	-	hydrogenase accessory protein HypB
763	 32.86	0	751787..752206	-	139	150402693	-	MmarC7_0769	-	hypothetical protein
764	 32.36	0	752216..753238	-	340	150402694	-	MmarC7_0770	-	hypothetical protein
765	 36.50	0	753292..754458	-	388	150402695	secD	MmarC7_0771	-	preprotein translocase subunit SecD
766	 38.06	+1	754476..755321	-	281	150402696	-	MmarC7_0772	-	preprotein translocase subunit SecF
767	 33.03	0	755386..756693	+	435	150402697	-	MmarC7_0773	-	peptidase U62 modulator of DNA gyrase
768	 29.13	-1	756746..757435	+	229	150402698	-	MmarC7_0774	-	ribonuclease III
769	 38.77	+1	757460..758710	-	416	150402699	-	MmarC7_0775	-	aspartate aminotransferase
770	 33.58	0	758818..759627	-	269	150402700	-	MmarC7_0776	-	prephenate dehydratase
771	 24.05	-2	759624..760334	-	236	150402701	-	MmarC7_0777	-	methyltransferase type 11
772	 34.71	0	760331..760621	-	96	150402702	-	MmarC7_0778	-	hypothetical protein
773	 36.52	0	760631..761602	-	323	150402703	-	MmarC7_0779	-	AIR synthase related protein
774	 36.95	0	761741..762985	-	414	150402704	pgk	MmarC7_0780	-	phosphoglycerate kinase
775	 33.55	0	763360..763812	+	150	150402705	-	MmarC7_0781	-	hypothetical protein
776	 32.05	0	763821..764366	+	181	150402706	-	MmarC7_0782	-	nucleotide kinase
777	 28.32	-1	764373..765569	-	398	150402707	-	MmarC7_0783	-	hypothetical protein
778	 27.29	-1	765570..766181	-	203	150402708	-	MmarC7_0784	-	nucleic acid binding OB-fold tRNA/helicase-type
779	 38.38	+1	766389..766844	+	151	150402709	-	MmarC7_0785	-	cytochrome c heme-binding site
780	 41.19	+1	766866..767336	+	156	150402710	-	MmarC7_0786	-	transporter component
781	 32.80	0	767398..767958	+	186	150402711	-	MmarC7_0787	-	hypothetical protein
782	 34.06	0	767955..768776	+	273	150402712	-	MmarC7_0788	-	hypothetical protein
783	 34.28	0	768791..769108	-	105	150402713	-	MmarC7_0789	-	hypothetical protein
784	 29.10	-1	769397..769987	-	196	150402714	-	MmarC7_0790	-	translin family protein
785	 38.21	+1	770255..771259	+	334	150402715	rpl3p	MmarC7_0791	-	50S ribosomal protein L3P
786	 36.63	0	771290..772048	+	252	150402716	rpl4lp	MmarC7_0792	-	50S ribosomal protein L4P
787	 33.72	0	772070..772330	+	86	150402717	rplW	MmarC7_0793	-	50S ribosomal protein L23
788	 41.77	+2	772371..773093	+	240	150402718	rpl2p	MmarC7_0794	-	50S ribosomal protein L2P
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.