IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
639	 38.79	+1	651599..651763	+	54	150402569	-	MmarC7_0645	-	hypothetical protein
640	 38.52	+1	651795..652064	+	89	150402570	ef1B	MmarC7_0646	-	elongation factor 1-beta
641	 28.10	-1	652156..652365	+	69	150402571	-	MmarC7_0647	-	hypothetical protein
642	 35.28	0	652385..652846	+	153	150402572	rpl22p	MmarC7_0648	-	50S ribosomal protein L22P
643	 36.16	0	652857..653492	+	211	150402573	rps3p	MmarC7_0649	-	30S ribosomal protein S3P
644	 36.11	0	653503..653718	+	71	150402574	-	MmarC7_0650	-	50S ribosomal protein L29
645	 36.25	0	653802..654110	+	102	150402575	-	MmarC7_0651	-	translation initiation factor Sui1
646	 31.31	0	654178..654474	+	98	150402576	-	MmarC7_0652	-	ribonuclease P protein component 1
647	 39.09	+1	654639..654968	+	109	150402577	rps17p	MmarC7_0653	-	30S ribosomal protein S17P
648	 38.85	+1	654989..655387	+	132	150402578	rpl14p	MmarC7_0654	-	50S ribosomal protein L14P
649	 31.94	0	655407..655766	+	119	150402579	rpl24p	MmarC7_0655	-	50S ribosomal protein L24P
650	 35.92	0	655778..656512	+	244	150402580	-	MmarC7_0656	-	30S ribosomal protein S4e
651	 36.81	0	656541..657086	+	181	150402581	rpl5p	MmarC7_0657	-	50S ribosomal protein L5P
652	 33.33	0	657096..657257	+	53	150402582	rps14P	MmarC7_0658	-	30S ribosomal protein S14P
653	 37.91	+1	657276..657668	+	130	150402583	rps8p	MmarC7_0659	-	30S ribosomal protein S8P
654	 37.52	0	657690..658238	+	182	150402584	rpl6p	MmarC7_0660	-	50S ribosomal protein L6P
655	 34.56	0	658248..658655	+	135	150402585	rpl32e	MmarC7_0661	-	50S ribosomal protein L32e
656	 36.89	0	658682..659131	+	149	150402586	rpl19e	MmarC7_0662	-	50S ribosomal protein L19e
657	 37.80	+1	659155..659736	+	193	150402587	rpl18p	MmarC7_0663	-	50S ribosomal protein L18P
658	 39.28	+1	659747..660436	+	229	150402588	rps5p	MmarC7_0664	-	30S ribosomal protein S5P
659	 36.34	0	660471..660935	+	154	150402589	rpl30p	MmarC7_0665	-	50S ribosomal protein L30P
660	 38.66	+1	660950..661381	+	143	150402590	rpl15p	MmarC7_0666	-	50S ribosomal protein L15P
661	 36.95	0	661609..662937	+	442	150402591	-	MmarC7_0667	-	preprotein translocase subunit SecY
662	 30.89	0	662968..663867	-	299	150402592	-	MmarC7_0668	-	glycosyl transferase family protein
663	 34.47	0	663966..666521	+	851	150402593	-	MmarC7_0669	-	oligosaccharyl transferase STT3 subunit
664	 36.30	0	666637..667176	+	179	150402594	-	MmarC7_0670	-	tRNA 2'-O-methylase
665	 34.94	0	667201..667821	+	206	150402595	-	MmarC7_0671	-	deoxycytidine triphosphate deaminase
666	 38.13	+1	667825..669201	+	458	150402596	-	MmarC7_0672	-	hypothetical protein
667	 30.25	0	669266..669427	+	53	150402597	-	MmarC7_0673	-	hypothetical protein
668	 37.11	0	669479..669796	-	105	150402598	-	MmarC7_0674	-	transcription termination factor Tfs
669	 33.06	0	669866..671308	-	480	150402599	-	MmarC7_0675	-	cation transporter
670	 35.68	0	671330..672268	-	312	150402600	-	MmarC7_0676	-	2-phosphoglycerate kinase
671	 38.94	+1	672346..673362	-	338	150402601	-	MmarC7_0677	-	adenylosuccinate synthetase
672	 37.71	+1	673471..673950	-	159	150402602	-	MmarC7_0678	-	ribosomal protein L11
673	 38.55	+1	674064..674504	-	146	150402603	nusG	MmarC7_0679	-	transcription antitermination protein NusG
674	 32.08	0	674639..674878	-	79	150402604	secE	MmarC7_0680	-	preprotein translocase subunit SecE
675	 38.72	+1	674910..676022	-	370	150402605	-	MmarC7_0681	-	cell division protein FtsZ
676	 36.16	0	676222..677319	+	365	150402606	-	MmarC7_0682	-	DNA topoisomerase VI subunit A
677	 36.79	0	677511..678782	+	423	150402607	-	MmarC7_0683	-	SCP-like extracellular
678	 38.49	+1	678931..680151	+	406	150402608	-	MmarC7_0684	-	cofactor-independent phosphoglycerate mutase
679	 34.18	0	680153..681094	-	313	150402609	-	MmarC7_0685	-	tRNA-modifying enzyme
680	 37.10	0	681200..681889	+	229	150402610	-	MmarC7_0686	-	molybdopterin-guanine dinucleotide biosynthesis protein B
681	 32.99	0	682003..682290	+	95	150402611	-	MmarC7_0687	-	regulatory protein ArsR
682	 37.93	+1	682485..683594	+	369	150402612	-	MmarC7_0688	-	small GTP-binding protein
683	 37.10	0	683594..684496	+	300	150402613	-	MmarC7_0689	-	methionine aminopeptidase
684	 36.67	0	684518..685087	+	189	150402614	-	MmarC7_0690	-	GMP synthase subunit A
685	 33.16	0	685119..685691	-	190	150402615	-	MmarC7_0691	-	ZPR1-like zinc finger protein
686	 34.40	0	686020..686676	+	218	150402616	-	MmarC7_0692	-	XRE family transcriptional regulator
687	 36.33	0	686683..686949	+	88	150402617	-	MmarC7_0693	-	hypothetical protein
688	 39.02	+1	686936..687427	+	163	150402618	-	MmarC7_0694	-	hypothetical protein
689	 37.78	+1	687427..687696	+	89	150402619	-	MmarC7_0695	-	hypothetical protein
690	 34.05	0	687702..687980	+	92	150402620	-	MmarC7_0696	-	hypothetical protein
691	 38.43	+1	687989..688243	+	84	150402621	-	MmarC7_0697	-	hypothetical protein
692	 37.15	0	688245..688715	+	156	150402622	-	MmarC7_0698	-	hypothetical protein
693	 36.39	0	688715..689401	+	228	150402623	-	MmarC7_0699	-	hypothetical protein
694	 37.41	0	689423..690085	+	220	150402624	-	MmarC7_0700	-	putative transmembrane subunit of a hydrogenase
695	 36.19	0	690095..690304	+	69	150402625	-	MmarC7_0701	-	hypothetical protein
696	 39.02	+1	690324..691184	+	286	150402626	-	MmarC7_0702	-	NADH dehydrogenase (ubiquinone)
697	 32.14	0	691193..691444	+	83	150402627	-	MmarC7_0703	-	hypothetical protein
698	 40.67	+1	691449..691748	+	99	150402628	-	MmarC7_0704	-	hypothetical protein
699	 35.28	0	691764..692174	+	136	150402629	-	MmarC7_0705	-	(NiFe)-hydrogenase-3-type complex Eha, EhaM
700	 39.70	+1	692196..692666	+	156	150402630	-	MmarC7_0706	-	NADH ubiquinone oxidoreductase 20 kDa subunit
701	 37.50	0	692681..693808	+	375	150402631	-	MmarC7_0707	-	NADH dehydrogenase (quinone)
702	 34.60	0	693837..695018	+	393	150402632	-	MmarC7_0708	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
703	 31.69	0	695011..695496	+	161	150402633	-	MmarC7_0709	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
704	 35.57	0	695517..696275	+	252	150402634	-	MmarC7_0710	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
705	 33.18	0	696291..696932	+	213	150402635	-	MmarC7_0711	-	signal transduction protein
706	 29.80	-1	696953..697348	+	131	150402636	-	MmarC7_0712	-	helix-turn-helix type 11 domain-containing protein
707	 31.66	0	697360..698553	-	397	150402637	-	MmarC7_0713	-	hypothetical protein
708	 33.00	0	698604..698906	-	100	150402638	-	MmarC7_0714	-	putative monovalent cation/H+ antiporter subunit E
709	 35.40	0	699100..699534	+	144	150402639	-	MmarC7_0715	-	prefoldin, alpha subunit
710	 30.67	0	699841..700890	+	349	150402640	-	MmarC7_0716	-	hypothetical protein
711	 36.01	0	700906..701577	+	223	150402641	-	MmarC7_0717	-	hypothetical protein
712	 36.20	0	701634..702017	+	127	150402642	-	MmarC7_0718	-	hypothetical protein
713	 34.75	0	702057..705161	+	1034	150402643	ileS	MmarC7_0719	-	isoleucyl-tRNA synthetase
714	 32.49	0	705197..706027	-	276	150402644	-	MmarC7_0720	-	hypothetical protein
715	 27.37	-1	706136..706873	-	245	150402645	-	MmarC7_0721	-	hypothetical protein
716	 33.26	0	706989..708332	+	447	150402646	-	MmarC7_0722	-	cobyrinic acid a,c-diamide synthase
717	 32.58	0	708347..709279	+	310	150402647	-	MmarC7_0723	-	hypothetical protein
718	 37.71	+1	709390..710646	+	418	150402648	-	MmarC7_0724	-	homoaconitate hydratase family protein
719	 38.79	+1	710839..711516	+	225	150402649	-	MmarC7_0725	-	cobalt transport protein CbiM
720	 38.78	+1	711516..711809	+	97	150402650	-	MmarC7_0726	-	cobalt transport protein CbiN
721	 32.69	0	711823..712596	+	257	150402651	-	MmarC7_0727	-	cobalt ABC transporter, inner membrane subunit CbiQ
722	 36.64	0	712659..713504	+	281	150402652	-	MmarC7_0728	-	cobalt transporter ATP-binding subunit
723	 31.28	0	713497..713982	+	161	150402653	-	MmarC7_0729	-	molybdenum cofactor synthesis domain-containing protein
724	 36.94	0	714004..714807	-	267	150402654	-	MmarC7_0730	-	MscS mechanosensitive ion channel
725	 33.91	0	714944..716341	+	465	150402655	-	MmarC7_0731	-	aldehyde dehydrogenase
726	 35.37	0	716386..717762	+	458	150402656	-	MmarC7_0732	-	peptidase U62 modulator of DNA gyrase
727	 34.10	0	717954..719654	-	566	150402657	-	MmarC7_0733	-	ATP-NAD/AcoX kinase
728	 27.00	-1	719743..720516	+	257	150402658	-	MmarC7_0734	-	chromatin associated protein KTI12
729	 33.41	0	720525..721793	-	422	150402659	-	MmarC7_0735	-	amidohydrolase
730	 32.97	0	721829..722386	-	185	150402660	-	MmarC7_0736	-	orotate phosphoribosyltransferase
731	 33.04	0	722493..723836	+	447	150402661	-	MmarC7_0737	-	hypothetical protein
732	 29.52	-1	723934..724536	+	200	150402662	-	MmarC7_0738	-	hypothetical protein
733	 32.43	0	724554..725552	-	332	150402663	-	MmarC7_0739	-	radical SAM family protein
734	 33.00	0	725632..727137	+	501	150402664	pheS	MmarC7_0740	-	phenylalanyl-tRNA synthetase subunit alpha
735	 32.71	0	727162..727641	+	159	150402665	-	MmarC7_0741	-	hypothetical protein
736	 30.52	0	727638..728420	+	260	150402666	-	MmarC7_0742	-	hypothetical protein
737	 34.11	0	728428..728940	-	170	150402667	-	MmarC7_0743	-	hypothetical protein
738	 39.16	+1	728980..730077	-	365	150402668	-	MmarC7_0744	-	cell division protein FtsZ
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.