IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
577	 36.67	0	586664..587143	+	159	150402507	-	MmarC7_0582	-	coenzyme F420-reducing hydrogenase delta subunit
578	 29.74	-1	587261..587455	+	64	150402508	-	MmarC7_0583	-	hypothetical protein
579	 29.38	-1	587467..588276	-	269	150402509	-	MmarC7_0584	-	hypothetical protein
580	 30.73	0	588369..589484	+	371	150402510	-	MmarC7_0585	-	metallophosphoesterase
581	 25.82	-2	589497..592478	+	993	150402511	-	MmarC7_0586	-	SMC domain-containing protein
582	 25.76	-2	592487..592882	+	131	150402512	-	MmarC7_0587	-	nucleotide binding protein PINc
583	 34.08	0	592898..593698	-	266	150402513	-	MmarC7_0588	-	hypothetical protein
584	 30.43	0	593710..594192	-	160	150402514	-	MmarC7_0589	-	hypothetical protein
585	 32.83	0	594182..594976	-	264	150402515	-	MmarC7_0590	-	undecaprenyl diphosphate synthase
586	 29.80	-1	594993..595727	-	244	150402516	-	MmarC7_0591	-	basic helix-loop-helix dimerization domain-containing protein
587	 41.29	+1	595855..596055	-	66	150402517	-	MmarC7_0592	-	transcription factor CBF/NF-Y histone
588	 31.49	0	596245..597327	-	360	150402518	-	MmarC7_0593	-	hypothetical protein
589	 36.04	0	597355..598131	-	258	150402519	-	MmarC7_0594	-	NAD+ synthetase
590	 32.95	0	598147..599460	-	437	150402520	-	MmarC7_0595	-	radical SAM domain-containing protein
591	 32.30	0	599466..599951	-	161	150402521	-	MmarC7_0596	-	ribosomal-protein-alanine acetyltransferase
592	 40.30	+1	600087..600875	-	262	150402522	-	MmarC7_0597	-	ribulose-1,5-biphosphate synthetase
593	 34.20	0	602079..603230	+	383	150402523	-	MmarC7_0599	-	thiamine biosynthesis/tRNA modification protein ThiI
594	 32.89	0	603245..603925	+	226	150402524	-	MmarC7_0600	-	hexapaptide repeat-containing transferase
595	 33.01	0	603943..604878	-	311	150402525	-	MmarC7_0601	-	PP-loop domain-containing protein
596	 27.84	-1	604894..605148	-	84	150402526	-	MmarC7_0602	-	thiamineS protein
597	 35.09	0	605192..605590	-	132	150402527	-	MmarC7_0603	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
598	 36.64	0	605604..607145	-	513	150402528	-	MmarC7_0604	-	hypothetical protein
599	 38.40	+1	607399..607635	+	78	150402529	rpoH	MmarC7_0605	-	DNA-directed RNA polymerase subunit H
600	 37.60	0	607719..609218	+	499	150402530	-	MmarC7_0606	-	DNA-directed RNA polymerase subunit beta''
601	 39.98	+1	609262..611097	+	611	150402531	-	MmarC7_0607	-	DNA-directed RNA polymerase subunit B'
602	 39.55	+1	611148..613817	+	889	150402532	-	MmarC7_0608	-	DNA-directed RNA polymerase subunit alpha
603	 36.86	0	613862..615022	+	386	150402533	-	MmarC7_0609	-	DNA-directed RNA polymerase subunit A''
604	 39.56	+1	615226..615546	+	106	150402534	-	MmarC7_0610	-	50S ribosomal protein L30e
605	 35.25	0	615563..616084	+	173	150402535	-	MmarC7_0611	-	transcription elongation factor NusA-like protein
606	 39.86	+1	616094..616537	+	147	150402536	rps12P	MmarC7_0612	-	30S ribosomal protein S12P
607	 35.63	0	616571..617137	+	188	150402537	-	MmarC7_0613	-	30S ribosomal protein S7P
608	 40.20	+1	617240..619423	+	727	150402538	-	MmarC7_0614	-	elongation factor EF-2
609	 39.94	+1	619508..620794	+	428	150402539	-	MmarC7_0615	-	elongation factor 1-alpha
610	 36.25	0	620843..621151	+	102	150402540	rps10p	MmarC7_0616	-	30S ribosomal protein S10P
611	 30.29	0	621436..622749	+	437	150402541	-	MmarC7_0617	-	phosphomannomutase
612	 39.13	+1	622817..623902	-	361	150402542	purP	MmarC7_0618	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
613	 30.56	0	624020..624739	+	239	150402543	-	MmarC7_0619	-	ribonuclease HII
614	 34.59	0	624739..625611	+	290	150402544	-	MmarC7_0620	-	tRNA methyltransferase complex GCD14 subunit
615	 33.33	0	625701..625961	+	86	150402545	-	MmarC7_0621	-	phage shock protein C, PspC
616	 30.15	-1	625991..627058	+	355	150402546	-	MmarC7_0622	-	hypothetical protein
617	 35.03	0	627278..627454	+	58	150402547	-	MmarC7_0623	-	hypothetical protein
618	 32.07	0	627482..628114	-	210	150402548	thyA	MmarC7_0624	-	thymidylate synthase
619	 31.46	0	628188..629306	+	372	150402549	-	MmarC7_0625	-	chlorohydrolase
620	 37.27	0	629367..630635	+	422	150402550	-	MmarC7_0626	-	beta-lactamase domain-containing protein
621	 39.56	+1	630840..632012	+	390	150402551	-	MmarC7_0627	-	nickel-dependent hydrogenase large subunit
622	 37.71	+1	632185..632709	+	174	150402552	-	MmarC7_0628	-	coenzyme F420-reducing hydrogenase delta subunit
623	 39.01	+1	632724..633410	+	228	150402553	-	MmarC7_0629	-	coenzyme F420 hydrogenase
624	 39.69	+1	633444..634292	+	282	150402554	-	MmarC7_0630	-	coenzyme F420-reducing hydrogenase subunit beta
625	 32.04	0	634397..635404	+	335	150402555	-	MmarC7_0631	-	hypothetical protein
626	 36.14	0	635455..636309	+	284	150402556	-	MmarC7_0632	-	hypothetical protein
627	 31.71	0	636347..636592	-	81	150402557	-	MmarC7_0633	-	redox-active disulfide protein 2
628	 32.90	0	636642..637790	-	382	150402558	-	MmarC7_0634	-	major facilitator transporter
629	 36.26	0	637899..638069	-	56	150402559	-	MmarC7_0635	-	hypothetical protein
630	 38.30	+1	638204..639250	-	348	150402560	-	MmarC7_0636	-	aspartate-semialdehyde dehydrogenase
631	 39.71	+1	639326..640768	-	480	150402561	-	MmarC7_0637	-	hypothetical protein
632	 29.26	-1	640907..641323	+	138	150402562	-	MmarC7_0638	-	hypothetical protein
633	 29.98	-1	641326..641982	-	218	150402563	-	MmarC7_0639	-	3-dehydroquinate dehydratase, type I
634	 33.87	0	641992..644241	-	749	150402564	-	MmarC7_0640	-	Hef nuclease
635	 35.71	0	644393..645697	-	434	150402565	-	MmarC7_0641	-	aminotransferase
636	 32.66	0	646092..649661	+	1189	150402566	-	MmarC7_0642	-	chromosome segregation protein SMC
637	 29.65	-1	649695..650942	+	415	150402567	-	MmarC7_0643	-	succinyl-diaminopimelate desuccinylase
638	 32.39	0	650943..651581	+	212	150402568	-	MmarC7_0644	-	aspartate/glutamate/uridylate kinase
639	 38.79	+1	651599..651763	+	54	150402569	-	MmarC7_0645	-	hypothetical protein
640	 38.52	+1	651795..652064	+	89	150402570	ef1B	MmarC7_0646	-	elongation factor 1-beta
641	 28.10	-1	652156..652365	+	69	150402571	-	MmarC7_0647	-	hypothetical protein
642	 35.28	0	652385..652846	+	153	150402572	rpl22p	MmarC7_0648	-	50S ribosomal protein L22P
643	 36.16	0	652857..653492	+	211	150402573	rps3p	MmarC7_0649	-	30S ribosomal protein S3P
644	 36.11	0	653503..653718	+	71	150402574	-	MmarC7_0650	-	50S ribosomal protein L29
645	 36.25	0	653802..654110	+	102	150402575	-	MmarC7_0651	-	translation initiation factor Sui1
646	 31.31	0	654178..654474	+	98	150402576	-	MmarC7_0652	-	ribonuclease P protein component 1
647	 39.09	+1	654639..654968	+	109	150402577	rps17p	MmarC7_0653	-	30S ribosomal protein S17P
648	 38.85	+1	654989..655387	+	132	150402578	rpl14p	MmarC7_0654	-	50S ribosomal protein L14P
649	 31.94	0	655407..655766	+	119	150402579	rpl24p	MmarC7_0655	-	50S ribosomal protein L24P
650	 35.92	0	655778..656512	+	244	150402580	-	MmarC7_0656	-	30S ribosomal protein S4e
651	 36.81	0	656541..657086	+	181	150402581	rpl5p	MmarC7_0657	-	50S ribosomal protein L5P
652	 33.33	0	657096..657257	+	53	150402582	rps14P	MmarC7_0658	-	30S ribosomal protein S14P
653	 37.91	+1	657276..657668	+	130	150402583	rps8p	MmarC7_0659	-	30S ribosomal protein S8P
654	 37.52	0	657690..658238	+	182	150402584	rpl6p	MmarC7_0660	-	50S ribosomal protein L6P
655	 34.56	0	658248..658655	+	135	150402585	rpl32e	MmarC7_0661	-	50S ribosomal protein L32e
656	 36.89	0	658682..659131	+	149	150402586	rpl19e	MmarC7_0662	-	50S ribosomal protein L19e
657	 37.80	+1	659155..659736	+	193	150402587	rpl18p	MmarC7_0663	-	50S ribosomal protein L18P
658	 39.28	+1	659747..660436	+	229	150402588	rps5p	MmarC7_0664	-	30S ribosomal protein S5P
659	 36.34	0	660471..660935	+	154	150402589	rpl30p	MmarC7_0665	-	50S ribosomal protein L30P
660	 38.66	+1	660950..661381	+	143	150402590	rpl15p	MmarC7_0666	-	50S ribosomal protein L15P
661	 36.95	0	661609..662937	+	442	150402591	-	MmarC7_0667	-	preprotein translocase subunit SecY
662	 30.89	0	662968..663867	-	299	150402592	-	MmarC7_0668	-	glycosyl transferase family protein
663	 34.47	0	663966..666521	+	851	150402593	-	MmarC7_0669	-	oligosaccharyl transferase STT3 subunit
664	 36.30	0	666637..667176	+	179	150402594	-	MmarC7_0670	-	tRNA 2'-O-methylase
665	 34.94	0	667201..667821	+	206	150402595	-	MmarC7_0671	-	deoxycytidine triphosphate deaminase
666	 38.13	+1	667825..669201	+	458	150402596	-	MmarC7_0672	-	hypothetical protein
667	 30.25	0	669266..669427	+	53	150402597	-	MmarC7_0673	-	hypothetical protein
668	 37.11	0	669479..669796	-	105	150402598	-	MmarC7_0674	-	transcription termination factor Tfs
669	 33.06	0	669866..671308	-	480	150402599	-	MmarC7_0675	-	cation transporter
670	 35.68	0	671330..672268	-	312	150402600	-	MmarC7_0676	-	2-phosphoglycerate kinase
671	 38.94	+1	672346..673362	-	338	150402601	-	MmarC7_0677	-	adenylosuccinate synthetase
672	 37.71	+1	673471..673950	-	159	150402602	-	MmarC7_0678	-	ribosomal protein L11
673	 38.55	+1	674064..674504	-	146	150402603	nusG	MmarC7_0679	-	transcription antitermination protein NusG
674	 32.08	0	674639..674878	-	79	150402604	secE	MmarC7_0680	-	preprotein translocase subunit SecE
675	 38.72	+1	674910..676022	-	370	150402605	-	MmarC7_0681	-	cell division protein FtsZ
676	 36.16	0	676222..677319	+	365	150402606	-	MmarC7_0682	-	DNA topoisomerase VI subunit A
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.