IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
462	 33.28	0	475514..477523	-	669	150402392	-	MmarC7_0466	-	helicase c2
463	 36.02	0	477650..479212	-	520	150402393	-	MmarC7_0467	-	alpha-glucan phosphorylase
464	 31.87	0	479309..479854	-	181	150402394	-	MmarC7_0468	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
465	 37.87	+1	480003..480971	+	322	150402395	radA	MmarC7_0469	-	DNA repair and recombination protein RadA
466	 38.81	+1	481052..482530	-	492	150402396	-	MmarC7_0470	-	hypothetical protein
467	 35.03	0	482842..483606	+	254	150402397	-	MmarC7_0471	-	extracellular solute-binding protein
468	 32.38	0	483635..484792	-	385	150402398	-	MmarC7_0472	-	geranylgeranyl reductase
469	 28.39	-1	484905..485531	+	208	150402399	-	MmarC7_0473	-	cobalt-precorrin-6Y C(5)-methyltransferase
470	 27.96	-1	485545..486177	+	210	150402400	-	MmarC7_0474	-	hypothetical protein
471	 38.61	+1	486273..486575	+	100	150402401	-	MmarC7_0475	-	FUN14 family protein
472	 32.58	0	486612..487667	+	351	150402402	-	MmarC7_0476	-	DNA polymerase beta subunit
473	 29.33	-1	487695..488144	+	149	150402403	-	MmarC7_0477	-	HAD family hydrolase
474	 30.86	0	488167..489057	-	296	150402404	-	MmarC7_0478	-	PP-loop domain-containing protein
475	 31.91	0	489114..489815	-	233	150402405	-	MmarC7_0479	-	formate dehydrogenase family accessory protein FdhD
476	 32.50	0	489892..490611	+	239	150402406	-	MmarC7_0480	-	UBA/THIF-type NAD/FAD binding protein
477	 32.63	0	490604..491029	+	141	150402407	-	MmarC7_0481	-	molybdopterin biosynthesis MoaE protein
478	 34.54	0	491058..491801	+	247	150402408	-	MmarC7_0482	-	hypothetical protein
479	 32.35	0	491835..492038	+	67	150402409	-	MmarC7_0483	-	hypothetical protein
480	 28.25	-1	492113..493096	+	327	150402410	-	MmarC7_0484	-	biotin synthase
481	 28.57	-1	493093..493869	+	258	150402411	-	MmarC7_0485	-	ExsB family protein
482	 34.21	0	493897..495039	+	380	150402412	-	MmarC7_0486	-	Sep-tRNA:Cys-tRNA synthetase
483	 32.78	0	495044..495403	+	119	150402413	-	MmarC7_0487	-	hypothetical protein
484	 34.86	0	495415..496332	-	305	150402414	-	MmarC7_0488	-	quinolinate synthetase
485	 33.01	0	496391..497002	-	203	150402415	-	MmarC7_0489	-	UBA/THIF-type NAD/FAD binding protein
486	 37.14	0	497207..497653	+	148	150402416	-	MmarC7_0490	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
487	 37.68	0	497676..498734	+	352	150402417	-	MmarC7_0491	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
488	 40.33	+1	498757..498999	+	80	150402418	-	MmarC7_0492	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
489	 40.57	+1	499041..499427	+	128	150402419	-	MmarC7_0493	-	molydopterin dinucleotide-binding region
490	 39.55	+1	499448..501151	+	567	150402420	-	MmarC7_0494	-	amidohydrolase 3
491	 37.61	0	501184..502002	+	272	150402421	-	MmarC7_0495	-	formylmethanofuran dehydrogenase
492	 35.52	0	502095..502598	+	167	150402422	-	MmarC7_0496	-	6-pyruvoyl tetrahydropterin synthase
493	 36.90	0	502689..503249	+	186	150402423	-	MmarC7_0497	-	signal-transduction protein
494	 34.40	0	503273..504112	+	279	150402424	-	MmarC7_0498	-	CBS domain-containing protein
495	 32.33	0	504222..505118	+	298	150402425	-	MmarC7_0499	-	hypothetical protein
496	 34.48	0	505182..506231	+	349	150402426	-	MmarC7_0500	-	phosphoribosylaminoimidazole synthetase
497	 33.45	0	506274..507938	+	554	150402427	pheT	MmarC7_0501	-	phenylalanyl-tRNA synthetase subunit beta
498	 31.33	0	508000..508497	+	165	150402428	-	MmarC7_0502	-	hypothetical protein
499	 27.41	-1	508498..509172	-	224	150402429	-	MmarC7_0503	-	NERD domain-containing protein
500	 37.25	0	509202..510170	-	322	150402430	-	MmarC7_0504	-	delta-aminolevulinic acid dehydratase
501	 36.57	0	510313..511641	-	442	150402431	-	MmarC7_0505	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
502	 39.00	+1	512018..512794	-	258	150402432	-	MmarC7_0506	-	cobyrinic acid ac-diamide synthase
503	 35.86	0	513015..514163	-	382	150402433	-	MmarC7_0507	-	hypothetical protein
504	 35.60	0	514269..514841	-	190	150402434	-	MmarC7_0508	-	hypothetical protein
505	 32.35	0	515360..516169	-	269	150402435	-	MmarC7_0510	-	hypothetical protein
506	 33.40	0	516186..517679	-	497	150402436	-	MmarC7_0511	-	hypothetical protein
507	 36.08	0	517770..519665	-	631	150402437	-	MmarC7_0512	-	glutamyl-tRNA(Gln) amidotransferase subunit E
508	 33.97	0	519697..520953	-	418	150402438	-	MmarC7_0513	-	glutamyl-tRNA(Gln) amidotransferase subunit D
509	 28.27	-1	521047..521757	-	236	150402439	-	MmarC7_0514	-	hypothetical protein
510	 32.25	0	521895..522911	+	338	150402440	-	MmarC7_0515	-	domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme
511	 39.10	+1	522936..524252	-	438	150402441	-	MmarC7_0516	-	bifunctional hexulose-6-phosphate synthase/ribonuclease regulator
512	 38.40	+1	524338..525777	-	479	150402442	-	MmarC7_0517	-	pyruvate ferredoxin/flavodoxin oxidoreductase
513	 37.78	+1	525779..526834	-	351	150402443	-	MmarC7_0518	-	2-ketoisovalerate ferredoxin reductase
514	 37.98	+1	526845..527102	-	85	150402444	-	MmarC7_0519	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
515	 37.08	0	527164..528843	-	559	150402445	-	MmarC7_0520	-	AMP-dependent synthetase and ligase
516	 35.86	0	528882..529436	-	184	150402446	-	MmarC7_0521	-	cupin 2 domain-containing protein
517	 35.62	0	529678..531297	-	539	150402447	sdhA	MmarC7_0522	-	succinate dehydrogenase flavoprotein subunit
518	 33.33	0	531320..531649	-	109	150402448	-	MmarC7_0523	-	hypothetical protein
519	 33.06	0	531654..532022	-	122	150402449	-	MmarC7_0524	-	CrcB protein
520	 34.22	0	532276..532614	-	112	150402450	-	MmarC7_0525	-	hypothetical protein
521	 32.36	0	532686..533198	+	170	150402451	-	MmarC7_0526	-	GCN5-related N-acetyltransferase
522	 32.43	0	533214..533765	-	183	150402452	-	MmarC7_0527	-	hypothetical protein
523	 37.75	+1	533804..534007	-	67	150402453	-	MmarC7_0528	-	hypothetical protein
524	 32.06	0	534120..536555	+	811	150402454	-	MmarC7_0529	-	DEAD/DEAH box helicase domain-containing protein
525	 28.71	-1	536552..537352	-	266	150402455	-	MmarC7_0530	-	hypothetical protein
526	 35.45	0	537870..539189	+	439	150402456	-	MmarC7_0531	-	DNA primase
527	 34.35	0	539223..539516	+	97	150402457	-	MmarC7_0532	-	hypothetical protein
528	 34.43	0	539556..540833	+	425	150402458	-	MmarC7_0533	-	UbiD family decarboxylase
529	 38.12	+1	540893..541414	-	173	150402459	rpl10e	MmarC7_0534	-	50S ribosomal protein L10e
530	 33.92	0	541541..542224	-	227	150402460	-	MmarC7_0535	-	GTP-binding protein
531	 32.92	0	542238..543461	-	407	150402461	-	MmarC7_0536	-	Alpha-amylase
532	 34.62	0	543528..545393	-	621	150402462	-	MmarC7_0537	-	glycoside hydrolase 15-related
533	 39.20	+1	545489..546664	-	391	150402463	-	MmarC7_0538	-	glycosyl transferase group 1
534	 32.57	0	546774..548345	+	523	150402464	-	MmarC7_0539	-	starch synthase
535	 32.27	0	548373..549686	+	437	150402465	-	MmarC7_0540	-	glucose-6-phosphate isomerase
536	 30.10	-1	549707..551098	+	463	150402466	-	MmarC7_0541	-	ADP-specific phosphofructokinase
537	 39.26	+1	551100..552263	-	387	150402467	-	MmarC7_0542	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
538	 38.57	+1	552299..554323	-	674	150402468	-	MmarC7_0543	-	formate dehydrogenase, alpha subunit
539	 39.51	+1	554628..555080	-	150	150402469	-	MmarC7_0544	-	carbonic anhydrase
540	 32.40	0	555101..555634	-	177	150402470	-	MmarC7_0545	-	hypothetical protein
541	 43.52	+2	555672..556496	-	274	150402471	-	MmarC7_0546	-	formate/nitrite transporter
542	 40.24	+1	556731..556976	-	81	150402472	-	MmarC7_0547	-	hypothetical protein
543	 34.95	0	557189..559108	-	639	150402473	-	MmarC7_0548	-	integral membrane sensor signal transduction histidine kinase
544	 29.72	-1	559135..559494	-	119	150402474	-	MmarC7_0549	-	response regulator receiver protein
545	 33.12	0	559718..561121	+	467	150402475	-	MmarC7_0550	-	hypothetical protein
546	 33.99	0	561146..561907	-	253	150402476	-	MmarC7_0551	-	hypothetical protein
547	 30.88	0	561970..563112	-	380	150402477	-	MmarC7_0552	-	methyltransferase small
548	 37.35	0	563163..563810	-	215	150402478	-	MmarC7_0553	-	putative translaldolase
549	 27.45	-1	563886..564497	-	203	150402479	-	MmarC7_0554	-	hypothetical protein
550	 33.83	0	564531..565136	-	201	150402480	-	MmarC7_0555	-	IMP cyclohydrolase
551	 36.48	0	565162..565320	-	52	150402481	-	MmarC7_0556	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
552	 27.59	-1	565339..565965	-	208	150402482	-	MmarC7_0557	-	hypothetical protein
553	 31.38	0	565974..566948	-	324	150402483	-	MmarC7_0558	-	flap endonuclease-1
554	 36.96	0	566986..569271	-	761	150402484	-	MmarC7_0559	-	phosphoesterase domain-containing protein
555	 37.45	0	569599..570132	-	177	150402485	-	MmarC7_0560	-	2-oxoglutarate ferredoxin oxidoreductase subunit gamma
556	 37.72	+1	570142..570939	-	265	150402486	-	MmarC7_0561	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
557	 32.43	0	571037..571813	-	258	150402487	-	MmarC7_0562	-	hypothetical protein
558	 36.70	0	571960..573561	-	533	150402488	-	MmarC7_0563	-	lysyl-tRNA synthetase
559	 37.78	+1	574324..574773	+	149	150402489	rps13p	MmarC7_0564	-	30S ribosomal protein S13P
560	 38.55	+1	574794..575330	+	178	150402490	rps4p	MmarC7_0565	-	30S ribosomal protein S4
561	 40.53	+1	575340..575714	+	124	150402491	rps11p	MmarC7_0566	-	30S ribosomal protein S11P
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.