IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
379	 36.27	0	393880..395139	-	419	150402309	-	MmarC7_0383	-	peptide chain release factor 1
380	 33.33	0	395329..395859	+	176	150402310	-	MmarC7_0384	-	tRNA-splicing endonuclease subunit alpha
381	 35.06	0	395878..396921	+	347	150402311	-	MmarC7_0385	-	malate/L-lactate dehydrogenase
382	 36.19	0	397044..398267	+	407	150402312	-	MmarC7_0386	-	beta-lactamase domain-containing protein
383	 36.19	0	398622..399041	+	139	150402313	-	MmarC7_0387	-	rubrerythrin
384	 33.10	0	399182..399604	-	140	150402314	-	MmarC7_0388	-	AsnC family transcriptional regulator
385	 37.70	+1	399814..400614	+	266	150402315	-	MmarC7_0389	-	hydroxyethylthiazole kinase
386	 33.49	0	400604..401227	+	207	150402316	thiE	MmarC7_0390	-	thiamine-phosphate pyrophosphorylase
387	 32.11	0	401404..401649	+	81	150402317	-	MmarC7_0391	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
388	 35.39	0	401853..404477	+	874	150402318	-	MmarC7_0392	-	ATP-dependent helicase
389	 29.40	-1	404480..405190	+	236	150402319	-	MmarC7_0393	-	metallophosphoesterase
390	 30.93	0	405242..405991	-	249	150402320	-	MmarC7_0394	-	bacitracin resistance protein BacA
391	 35.61	0	406143..406931	+	262	150402321	-	MmarC7_0395	-	cell division ATPase MinD
392	 35.94	0	406982..408361	-	459	150402322	-	MmarC7_0396	-	amidophosphoribosyltransferase
393	 35.38	0	408497..408691	-	64	150402323	rpl37e	MmarC7_0397	-	50S ribosomal protein L37e
394	 33.33	0	408769..408987	-	72	150402324	-	MmarC7_0398	-	like-Sm ribonucleoprotein core
395	 40.47	+1	409119..410393	+	424	150402325	-	MmarC7_0399	-	homoaconitate hydratase family protein
396	 33.06	0	410457..410819	-	120	150402326	-	MmarC7_0400	-	signal transduction protein
397	 38.48	+1	410865..411992	-	375	150402327	-	MmarC7_0401	-	NADH-ubiquinone oxidoreductase chain 49kDa
398	 36.44	0	412222..412800	+	192	150402328	-	MmarC7_0402	-	CoB--CoM heterodisulfide reductase
399	 39.76	+1	412813..413715	+	300	150402329	-	MmarC7_0403	-	CoB--CoM heterodisulfide reductase
400	 32.06	0	413757..414071	+	104	150402330	-	MmarC7_0404	-	carboxymuconolactone decarboxylase
401	 35.29	0	414085..414441	+	118	150402331	-	MmarC7_0405	-	desulfoferrodoxin ferrous iron-binding region
402	 31.46	0	414462..414728	+	88	150402332	-	MmarC7_0406	-	MTH865-like family protein
403	 36.74	0	414752..415279	+	175	150402333	-	MmarC7_0407	-	Ferritin Dps family protein
404	 36.51	0	415288..415476	+	62	150402334	-	MmarC7_0408	-	hypothetical protein
405	 33.62	0	415510..415860	+	116	150402335	-	MmarC7_0409	-	hypothetical protein
406	 32.13	0	415888..417051	+	387	150402336	-	MmarC7_0410	-	beta-lactamase domain-containing protein
407	 30.79	0	417070..417384	+	104	150402337	-	MmarC7_0411	-	CutA1 divalent ion tolerance protein
408	 25.00	-2	417504..417719	+	71	150402338	-	MmarC7_0412	-	heavy metal transport/detoxification protein
409	 33.29	0	417739..419910	+	723	150402339	-	MmarC7_0413	-	heavy metal translocating P-type ATPase
410	 36.53	0	420073..420666	+	197	150402340	-	MmarC7_0414	-	NADPH-dependent FMN reductase
411	 33.87	0	420669..421223	+	184	150402341	-	MmarC7_0415	-	archaeoflavoprotein AfpA
412	 35.88	0	421224..421970	+	248	150402342	-	MmarC7_0416	-	ABC transporter related
413	 37.08	0	421940..423166	+	408	150402343	-	MmarC7_0417	-	SufBD protein
414	 31.75	0	423311..424003	+	230	150402344	-	MmarC7_0418	-	glycosyl transferase family protein
415	 32.36	0	424015..424629	+	204	150402345	-	MmarC7_0419	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
416	 37.00	0	424699..425298	-	199	150402346	-	MmarC7_0420	-	hypothetical protein
417	 37.77	+1	425492..426145	+	217	150402347	-	MmarC7_0421	-	peroxiredoxin
418	 32.23	0	426288..427373	+	361	150402348	-	MmarC7_0422	-	hypothetical protein
419	 31.39	0	427513..428595	+	360	150402349	-	MmarC7_0423	-	hypothetical protein
420	 37.70	+1	428742..429863	+	373	150402350	-	MmarC7_0424	-	periplasmic binding protein
421	 37.16	0	430038..431135	+	365	150402351	-	MmarC7_0425	-	periplasmic binding protein
422	 36.26	0	431285..432412	+	375	150402352	-	MmarC7_0426	-	periplasmic binding protein
423	 36.99	0	432523..433644	+	373	150402353	-	MmarC7_0427	-	periplasmic binding protein
424	 36.79	0	433780..434907	+	375	150402354	-	MmarC7_0428	-	periplasmic binding protein
425	 37.82	+1	435014..436060	+	348	150402355	-	MmarC7_0429	-	transport system permease protein
426	 34.25	0	436078..436839	+	253	150402356	-	MmarC7_0430	-	ABC transporter related
427	 28.22	-1	436840..437367	-	175	150402357	-	MmarC7_0431	-	GCN5-related N-acetyltransferase
428	 28.89	-1	437485..438024	+	179	150402358	-	MmarC7_0432	-	hydrogenase maturation protease HycI
429	 35.21	0	438037..440115	+	692	150402359	-	MmarC7_0433	-	peptidase S16, Lon-like protease
430	 29.65	-1	440145..440687	+	180	150402360	-	MmarC7_0434	-	class II aldolase/adducin family protein
431	 34.06	0	440748..441023	-	91	150402361	-	MmarC7_0435	-	hypothetical protein
432	 36.94	0	441169..441888	-	239	150402362	-	MmarC7_0436	-	ribose 5-phosphate isomerase
433	 38.19	+1	441956..442408	-	150	150402363	-	MmarC7_0437	-	peptidylprolyl isomerase FKBP-type
434	 38.79	+1	442599..443570	+	323	150402364	-	MmarC7_0438	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
435	 29.48	-1	443667..444782	+	371	150402365	-	MmarC7_0439	-	radical SAM domain-containing protein
436	 40.41	+1	445409..449947	+	1512	150402366	-	MmarC7_0440	-	hypothetical protein
437	 39.78	+1	450006..452051	+	681	150402367	-	MmarC7_0441	-	surface protein
438	 26.54	-1	452127..452435	+	102	150402368	-	MmarC7_0442	-	putative cytoplasmic protein
439	 33.88	0	452589..453137	+	182	150402369	-	MmarC7_0443	-	hypothetical protein
440	 35.70	0	453317..454078	+	253	150402370	-	MmarC7_0444	-	binding-protein-dependent transport systems inner membrane component
441	 35.29	0	454113..454877	+	254	150402371	-	MmarC7_0445	-	ABC transporter related
442	 31.81	0	454978..455832	+	284	150402372	-	MmarC7_0446	-	phosphate uptake regulator, PhoU
443	 35.93	0	455981..457291	+	436	150402373	-	MmarC7_0447	-	diaminopimelate decarboxylase
444	 31.88	0	457351..457902	-	183	150402374	-	MmarC7_0448	-	nuclease
445	 30.99	0	457910..458293	-	127	150402375	-	MmarC7_0449	-	hypothetical protein
446	 32.43	0	458298..459398	-	366	150402376	cbiD	MmarC7_0450	-	cobalt-precorrin-6A synthase
447	 30.49	0	459439..460458	-	339	150402377	-	MmarC7_0451	-	peptidase M24
448	 35.12	0	460524..461813	-	429	150402378	-	MmarC7_0452	-	3-phosphoshikimate 1-carboxyvinyltransferase
449	 39.67	+1	461982..463322	+	446	150402379	-	MmarC7_0453	-	glutamine synthetase, type I
450	 37.07	0	463533..463907	+	124	150402380	-	MmarC7_0454	-	30S ribosomal protein S6e
451	 38.44	+1	464068..465300	+	410	150402381	-	MmarC7_0455	-	translation initiation factor IF-2 subunit gamma
452	 27.32	-1	465338..466402	+	354	150402382	-	MmarC7_0456	-	hypothetical protein
453	 39.13	+1	466533..467222	+	229	150402383	-	MmarC7_0457	-	helix-turn-helix domain-containing protein
454	 41.52	+2	467284..468333	+	349	150402384	-	MmarC7_0458	-	hypothetical protein
455	 40.80	+1	468352..469530	+	392	150402385	-	MmarC7_0459	-	acetyl-CoA acetyltransferase
456	 40.71	+1	469568..469960	+	130	150402386	-	MmarC7_0460	-	hypothetical protein
457	 30.53	0	469975..470652	-	225	150402387	-	MmarC7_0461	-	hypothetical protein
458	 33.67	0	470753..472231	-	492	150402388	-	MmarC7_0462	-	cobyric acid synthase
459	 33.60	0	472361..473476	-	371	150402389	-	MmarC7_0463	-	histidinol-phosphate aminotransferase
460	 30.15	-1	473502..474161	-	219	150402390	-	MmarC7_0464	-	hypothetical protein
461	 36.46	0	474178..475425	-	415	150402391	-	MmarC7_0465	-	LOR/SDH bifunctional protein
462	 33.28	0	475514..477523	-	669	150402392	-	MmarC7_0466	-	helicase c2
463	 36.02	0	477650..479212	-	520	150402393	-	MmarC7_0467	-	alpha-glucan phosphorylase
464	 31.87	0	479309..479854	-	181	150402394	-	MmarC7_0468	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
465	 37.87	+1	480003..480971	+	322	150402395	radA	MmarC7_0469	-	DNA repair and recombination protein RadA
466	 38.81	+1	481052..482530	-	492	150402396	-	MmarC7_0470	-	hypothetical protein
467	 35.03	0	482842..483606	+	254	150402397	-	MmarC7_0471	-	extracellular solute-binding protein
468	 32.38	0	483635..484792	-	385	150402398	-	MmarC7_0472	-	geranylgeranyl reductase
469	 28.39	-1	484905..485531	+	208	150402399	-	MmarC7_0473	-	cobalt-precorrin-6Y C(5)-methyltransferase
470	 27.96	-1	485545..486177	+	210	150402400	-	MmarC7_0474	-	hypothetical protein
471	 38.61	+1	486273..486575	+	100	150402401	-	MmarC7_0475	-	FUN14 family protein
472	 32.58	0	486612..487667	+	351	150402402	-	MmarC7_0476	-	DNA polymerase beta subunit
473	 29.33	-1	487695..488144	+	149	150402403	-	MmarC7_0477	-	HAD family hydrolase
474	 30.86	0	488167..489057	-	296	150402404	-	MmarC7_0478	-	PP-loop domain-containing protein
475	 31.91	0	489114..489815	-	233	150402405	-	MmarC7_0479	-	formate dehydrogenase family accessory protein FdhD
476	 32.50	0	489892..490611	+	239	150402406	-	MmarC7_0480	-	UBA/THIF-type NAD/FAD binding protein
477	 32.63	0	490604..491029	+	141	150402407	-	MmarC7_0481	-	molybdopterin biosynthesis MoaE protein
478	 34.54	0	491058..491801	+	247	150402408	-	MmarC7_0482	-	hypothetical protein
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.