IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
355	 25.19	-2	370891..371160	-	89	150402285	-	MmarC7_0359	-	ribonucleoprotein complex SRP, Srp19 component
356	 31.23	0	371175..372125	-	316	150402286	-	MmarC7_0360	-	magnesium and cobalt transport protein CorA
357	 32.52	0	372136..373245	-	369	150402287	-	MmarC7_0361	-	hypothetical protein
358	 28.05	-1	373295..374449	-	384	150402288	-	MmarC7_0362	-	hypothetical protein
359	 32.59	0	374436..375509	-	357	150402289	-	MmarC7_0363	-	hypothetical protein
360	 32.67	0	375514..376269	-	251	150402290	-	MmarC7_0364	-	hypothetical protein
361	 35.46	0	376332..377270	-	312	150402291	-	MmarC7_0365	-	transketolase central region
362	 34.70	0	377331..377990	-	219	150402292	-	MmarC7_0366	-	ribulose-phosphate 3-epimerase
363	 36.11	0	378006..378833	-	275	150402293	-	MmarC7_0367	-	transketolase domain-containing protein
364	 36.56	0	379164..380216	+	350	150402294	-	MmarC7_0368	-	cellulase
365	 31.30	0	380297..380788	+	163	150402295	-	MmarC7_0369	-	hypothetical protein
366	 36.03	0	380800..381096	-	98	150402296	-	MmarC7_0370	-	hypothetical protein
367	 33.02	0	381233..382177	+	314	150402297	-	MmarC7_0371	-	hypothetical protein
368	 33.44	0	382304..384148	+	614	150402298	-	MmarC7_0372	-	integral membrane sensor signal transduction histidine kinase
369	 29.96	-1	384189..384752	-	187	150402299	-	MmarC7_0373	-	metal dependent phophohydrolase
370	 33.84	0	384795..385973	-	392	150402300	-	MmarC7_0374	-	translation-associated GTPase
371	 33.33	0	386001..387317	-	438	150402301	-	MmarC7_0375	-	radical SAM domain-containing protein
372	 33.02	0	387651..388598	+	315	150402302	-	MmarC7_0376	-	thiamine-monophosphate kinase
373	 25.58	-2	388592..389107	+	171	150402303	-	MmarC7_0377	-	hypothetical protein
374	 31.70	0	389145..389942	+	265	150402304	-	MmarC7_0378	-	NOL1/NOP2/sun family RNA methylase
375	 32.12	0	389994..392135	+	713	150402305	-	MmarC7_0379	-	RNA-binding S1 domain-containing protein
376	 36.33	0	392179..392778	-	199	150402306	-	MmarC7_0380	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
377	 35.17	0	392820..393308	-	162	150402307	-	MmarC7_0381	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
378	 32.83	0	393417..393815	-	132	150402308	-	MmarC7_0382	-	hypothetical protein
379	 36.27	0	393880..395139	-	419	150402309	-	MmarC7_0383	-	peptide chain release factor 1
380	 33.33	0	395329..395859	+	176	150402310	-	MmarC7_0384	-	tRNA-splicing endonuclease subunit alpha
381	 35.06	0	395878..396921	+	347	150402311	-	MmarC7_0385	-	malate/L-lactate dehydrogenase
382	 36.19	0	397044..398267	+	407	150402312	-	MmarC7_0386	-	beta-lactamase domain-containing protein
383	 36.19	0	398622..399041	+	139	150402313	-	MmarC7_0387	-	rubrerythrin
384	 33.10	0	399182..399604	-	140	150402314	-	MmarC7_0388	-	AsnC family transcriptional regulator
385	 37.70	+1	399814..400614	+	266	150402315	-	MmarC7_0389	-	hydroxyethylthiazole kinase
386	 33.49	0	400604..401227	+	207	150402316	thiE	MmarC7_0390	-	thiamine-phosphate pyrophosphorylase
387	 32.11	0	401404..401649	+	81	150402317	-	MmarC7_0391	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
388	 35.39	0	401853..404477	+	874	150402318	-	MmarC7_0392	-	ATP-dependent helicase
389	 29.40	-1	404480..405190	+	236	150402319	-	MmarC7_0393	-	metallophosphoesterase
390	 30.93	0	405242..405991	-	249	150402320	-	MmarC7_0394	-	bacitracin resistance protein BacA
391	 35.61	0	406143..406931	+	262	150402321	-	MmarC7_0395	-	cell division ATPase MinD
392	 35.94	0	406982..408361	-	459	150402322	-	MmarC7_0396	-	amidophosphoribosyltransferase
393	 35.38	0	408497..408691	-	64	150402323	rpl37e	MmarC7_0397	-	50S ribosomal protein L37e
394	 33.33	0	408769..408987	-	72	150402324	-	MmarC7_0398	-	like-Sm ribonucleoprotein core
395	 40.47	+1	409119..410393	+	424	150402325	-	MmarC7_0399	-	homoaconitate hydratase family protein
396	 33.06	0	410457..410819	-	120	150402326	-	MmarC7_0400	-	signal transduction protein
397	 38.48	+1	410865..411992	-	375	150402327	-	MmarC7_0401	-	NADH-ubiquinone oxidoreductase chain 49kDa
398	 36.44	0	412222..412800	+	192	150402328	-	MmarC7_0402	-	CoB--CoM heterodisulfide reductase
399	 39.76	+1	412813..413715	+	300	150402329	-	MmarC7_0403	-	CoB--CoM heterodisulfide reductase
400	 32.06	0	413757..414071	+	104	150402330	-	MmarC7_0404	-	carboxymuconolactone decarboxylase
401	 35.29	0	414085..414441	+	118	150402331	-	MmarC7_0405	-	desulfoferrodoxin ferrous iron-binding region
402	 31.46	0	414462..414728	+	88	150402332	-	MmarC7_0406	-	MTH865-like family protein
403	 36.74	0	414752..415279	+	175	150402333	-	MmarC7_0407	-	Ferritin Dps family protein
404	 36.51	0	415288..415476	+	62	150402334	-	MmarC7_0408	-	hypothetical protein
405	 33.62	0	415510..415860	+	116	150402335	-	MmarC7_0409	-	hypothetical protein
406	 32.13	0	415888..417051	+	387	150402336	-	MmarC7_0410	-	beta-lactamase domain-containing protein
407	 30.79	0	417070..417384	+	104	150402337	-	MmarC7_0411	-	CutA1 divalent ion tolerance protein
408	 25.00	-2	417504..417719	+	71	150402338	-	MmarC7_0412	-	heavy metal transport/detoxification protein
409	 33.29	0	417739..419910	+	723	150402339	-	MmarC7_0413	-	heavy metal translocating P-type ATPase
410	 36.53	0	420073..420666	+	197	150402340	-	MmarC7_0414	-	NADPH-dependent FMN reductase
411	 33.87	0	420669..421223	+	184	150402341	-	MmarC7_0415	-	archaeoflavoprotein AfpA
412	 35.88	0	421224..421970	+	248	150402342	-	MmarC7_0416	-	ABC transporter related
413	 37.08	0	421940..423166	+	408	150402343	-	MmarC7_0417	-	SufBD protein
414	 31.75	0	423311..424003	+	230	150402344	-	MmarC7_0418	-	glycosyl transferase family protein
415	 32.36	0	424015..424629	+	204	150402345	-	MmarC7_0419	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
416	 37.00	0	424699..425298	-	199	150402346	-	MmarC7_0420	-	hypothetical protein
417	 37.77	+1	425492..426145	+	217	150402347	-	MmarC7_0421	-	peroxiredoxin
418	 32.23	0	426288..427373	+	361	150402348	-	MmarC7_0422	-	hypothetical protein
419	 31.39	0	427513..428595	+	360	150402349	-	MmarC7_0423	-	hypothetical protein
420	 37.70	+1	428742..429863	+	373	150402350	-	MmarC7_0424	-	periplasmic binding protein
421	 37.16	0	430038..431135	+	365	150402351	-	MmarC7_0425	-	periplasmic binding protein
422	 36.26	0	431285..432412	+	375	150402352	-	MmarC7_0426	-	periplasmic binding protein
423	 36.99	0	432523..433644	+	373	150402353	-	MmarC7_0427	-	periplasmic binding protein
424	 36.79	0	433780..434907	+	375	150402354	-	MmarC7_0428	-	periplasmic binding protein
425	 37.82	+1	435014..436060	+	348	150402355	-	MmarC7_0429	-	transport system permease protein
426	 34.25	0	436078..436839	+	253	150402356	-	MmarC7_0430	-	ABC transporter related
427	 28.22	-1	436840..437367	-	175	150402357	-	MmarC7_0431	-	GCN5-related N-acetyltransferase
428	 28.89	-1	437485..438024	+	179	150402358	-	MmarC7_0432	-	hydrogenase maturation protease HycI
429	 35.21	0	438037..440115	+	692	150402359	-	MmarC7_0433	-	peptidase S16, Lon-like protease
430	 29.65	-1	440145..440687	+	180	150402360	-	MmarC7_0434	-	class II aldolase/adducin family protein
431	 34.06	0	440748..441023	-	91	150402361	-	MmarC7_0435	-	hypothetical protein
432	 36.94	0	441169..441888	-	239	150402362	-	MmarC7_0436	-	ribose 5-phosphate isomerase
433	 38.19	+1	441956..442408	-	150	150402363	-	MmarC7_0437	-	peptidylprolyl isomerase FKBP-type
434	 38.79	+1	442599..443570	+	323	150402364	-	MmarC7_0438	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
435	 29.48	-1	443667..444782	+	371	150402365	-	MmarC7_0439	-	radical SAM domain-containing protein
436	 40.41	+1	445409..449947	+	1512	150402366	-	MmarC7_0440	-	hypothetical protein
437	 39.78	+1	450006..452051	+	681	150402367	-	MmarC7_0441	-	surface protein
438	 26.54	-1	452127..452435	+	102	150402368	-	MmarC7_0442	-	putative cytoplasmic protein
439	 33.88	0	452589..453137	+	182	150402369	-	MmarC7_0443	-	hypothetical protein
440	 35.70	0	453317..454078	+	253	150402370	-	MmarC7_0444	-	binding-protein-dependent transport systems inner membrane component
441	 35.29	0	454113..454877	+	254	150402371	-	MmarC7_0445	-	ABC transporter related
442	 31.81	0	454978..455832	+	284	150402372	-	MmarC7_0446	-	phosphate uptake regulator, PhoU
443	 35.93	0	455981..457291	+	436	150402373	-	MmarC7_0447	-	diaminopimelate decarboxylase
444	 31.88	0	457351..457902	-	183	150402374	-	MmarC7_0448	-	nuclease
445	 30.99	0	457910..458293	-	127	150402375	-	MmarC7_0449	-	hypothetical protein
446	 32.43	0	458298..459398	-	366	150402376	cbiD	MmarC7_0450	-	cobalt-precorrin-6A synthase
447	 30.49	0	459439..460458	-	339	150402377	-	MmarC7_0451	-	peptidase M24
448	 35.12	0	460524..461813	-	429	150402378	-	MmarC7_0452	-	3-phosphoshikimate 1-carboxyvinyltransferase
449	 39.67	+1	461982..463322	+	446	150402379	-	MmarC7_0453	-	glutamine synthetase, type I
450	 37.07	0	463533..463907	+	124	150402380	-	MmarC7_0454	-	30S ribosomal protein S6e
451	 38.44	+1	464068..465300	+	410	150402381	-	MmarC7_0455	-	translation initiation factor IF-2 subunit gamma
452	 27.32	-1	465338..466402	+	354	150402382	-	MmarC7_0456	-	hypothetical protein
453	 39.13	+1	466533..467222	+	229	150402383	-	MmarC7_0457	-	helix-turn-helix domain-containing protein
454	 41.52	+2	467284..468333	+	349	150402384	-	MmarC7_0458	-	hypothetical protein
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.