IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
300	 32.59	0	318820..319089	+	89	150402230	-	MmarC7_0303	-	multiple resistance and pH regulation protein F
301	 35.65	0	319123..319770	-	215	150402231	-	MmarC7_0304	-	hypothetical protein
302	 35.97	0	319843..320637	-	264	150402232	-	MmarC7_0305	-	stationary-phase survival protein SurE
303	 33.46	0	321068..321877	+	269	150402233	-	MmarC7_0306	-	regulatory protein Crp
304	 39.91	+1	321910..322791	-	293	150402234	-	MmarC7_0307	-	CoB--CoM heterodisulfide reductase
305	 37.84	+1	322826..323380	-	184	150402235	-	MmarC7_0308	-	CoB--CoM heterodisulfide reductase
306	 26.47	-2	323512..323817	+	101	150402236	-	MmarC7_0309	-	hypothetical protein
307	 34.66	0	323841..325043	+	400	150402237	-	MmarC7_0310	-	hypothetical protein
308	 28.28	-1	325078..326046	+	322	150402238	-	MmarC7_0311	-	hypothetical protein
309	 35.61	0	326272..327723	+	483	150402239	-	MmarC7_0312	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
310	 31.94	0	327734..329164	+	476	150402240	cysS	MmarC7_0313	-	cysteinyl-tRNA synthetase
311	 30.26	0	329202..329819	+	205	150402241	-	MmarC7_0314	-	hypothetical protein
312	 33.33	0	329853..331697	+	614	150402242	-	MmarC7_0315	-	hypothetical protein
313	 36.89	0	331766..333310	+	514	150402243	-	MmarC7_0316	-	2-isopropylmalate synthase
314	 30.32	0	333414..333977	-	187	150402244	-	MmarC7_0317	-	putative adenylyl cyclase CyaB
315	 32.64	0	333974..334408	-	144	150402245	-	MmarC7_0318	-	BadM/Rrf2 family transcriptional regulator
316	 32.47	0	334507..334968	+	153	150402246	-	MmarC7_0319	-	putative molybdenum cofactor biosynthesis protein C
317	 35.82	0	334987..336471	-	494	150402247	-	MmarC7_0320	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
318	 34.80	0	336611..337567	-	318	150402248	-	MmarC7_0321	-	CaCA family Na(+)/Ca(+) antiporter
319	 34.31	0	337612..338535	-	307	150402249	-	MmarC7_0322	-	signal peptide peptidase SppA, 36K type
320	 32.52	0	338566..339183	-	205	150402250	-	MmarC7_0323	-	hypothetical protein
321	 31.65	0	339278..339694	-	138	150402251	-	MmarC7_0324	-	hypothetical protein
322	 33.87	0	339709..340836	-	375	150402252	-	MmarC7_0325	-	aminotransferase class I and II
323	 36.08	0	341026..341280	+	84	150402253	-	MmarC7_0326	-	putative monovalent cation/H+ antiporter subunit G
324	 34.98	0	341290..341532	+	80	150402254	-	MmarC7_0327	-	hypothetical protein
325	 31.85	0	341599..342069	-	156	150402255	-	MmarC7_0328	-	dUTP diphosphatase
326	 30.99	0	342071..343306	-	411	150402256	-	MmarC7_0329	-	nucleotidyl transferase
327	 35.01	0	343316..344629	-	437	150402257	-	MmarC7_0330	-	phosphoglucosamine mutase
328	 23.38	-2	344751..345704	+	317	150402258	-	MmarC7_0331	-	hypothetical protein
329	 30.07	-1	345701..347077	+	458	150402259	-	MmarC7_0332	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
330	 25.54	-2	347058..347891	+	277	150402260	-	MmarC7_0333	-	glycosyl transferase family protein
331	 26.07	-2	347878..348675	+	265	150402261	-	MmarC7_0334	-	hypothetical protein
332	 26.73	-1	348677..349645	-	322	150402262	-	MmarC7_0335	-	glycosyl transferase family protein
333	 36.25	0	350603..351151	-	182	150402263	-	MmarC7_0337	-	hexapaptide repeat-containing transferase
334	 28.21	-1	351347..352204	-	285	150402264	-	MmarC7_0338	-	glycosyl transferase family protein
335	 31.28	0	352271..353194	-	307	150402265	-	MmarC7_0339	-	NAD-dependent epimerase/dehydratase
336	 34.19	0	353204..354256	-	350	150402266	-	MmarC7_0340	-	GDP-mannose 4,6-dehydratase
337	 26.15	-2	354262..355764	-	500	150402267	-	MmarC7_0341	-	polysaccharide biosynthesis protein
338	 30.60	0	355792..356670	-	292	150402268	-	MmarC7_0342	-	NAD-dependent epimerase/dehydratase
339	 33.33	0	356704..357552	-	282	150402269	-	MmarC7_0343	-	UTP-glucose-1-phosphate uridylyltransferase
340	 32.14	0	357625..358548	-	307	150402270	-	MmarC7_0344	-	auxin efflux carrier
341	 26.62	-1	358545..358991	-	148	150402271	-	MmarC7_0345	-	phosphopantetheine adenylyltransferase
342	 35.79	0	359055..361331	-	758	150402272	-	MmarC7_0346	-	phosphoenolpyruvate synthase
343	 36.17	0	361574..362419	+	281	150402273	-	MmarC7_0347	-	phosphate binding protein
344	 36.53	0	362492..363367	+	291	150402274	-	MmarC7_0348	-	phosphate ABC transporter, inner membrane subunit PstC
345	 37.14	0	363377..364243	+	288	150402275	-	MmarC7_0349	-	phosphate ABC transporter, inner membrane subunit PstA
346	 34.39	0	364261..365016	+	251	150402276	-	MmarC7_0350	-	phosphate ABC transporter, ATPase subunit
347	 30.34	0	365047..365748	+	233	150402277	-	MmarC7_0351	-	phosphate uptake regulator, PhoU
348	 32.11	0	365745..366152	-	135	150402278	-	MmarC7_0352	-	transcriptional regulator, TrmB
349	 35.86	0	366370..367557	-	395	150402279	-	MmarC7_0353	-	acetylornithine aminotransferase
350	 30.56	0	367710..368285	+	191	150402280	-	MmarC7_0354	-	phospholipase D/transphosphatidylase
351	 30.54	0	368282..368926	+	214	150402281	-	MmarC7_0355	-	TfuA domain-containing protein
352	 31.54	0	368976..369422	+	148	150402282	-	MmarC7_0356	-	aspartate carbamoyltransferase regulatory subunit
353	 34.44	0	369475..370563	+	362	150402283	-	MmarC7_0357	-	succinyl-CoA synthetase, beta subunit
354	 24.76	-2	370576..370890	+	104	150402284	-	MmarC7_0358	-	hypothetical protein
355	 25.19	-2	370891..371160	-	89	150402285	-	MmarC7_0359	-	ribonucleoprotein complex SRP, Srp19 component
356	 31.23	0	371175..372125	-	316	150402286	-	MmarC7_0360	-	magnesium and cobalt transport protein CorA
357	 32.52	0	372136..373245	-	369	150402287	-	MmarC7_0361	-	hypothetical protein
358	 28.05	-1	373295..374449	-	384	150402288	-	MmarC7_0362	-	hypothetical protein
359	 32.59	0	374436..375509	-	357	150402289	-	MmarC7_0363	-	hypothetical protein
360	 32.67	0	375514..376269	-	251	150402290	-	MmarC7_0364	-	hypothetical protein
361	 35.46	0	376332..377270	-	312	150402291	-	MmarC7_0365	-	transketolase central region
362	 34.70	0	377331..377990	-	219	150402292	-	MmarC7_0366	-	ribulose-phosphate 3-epimerase
363	 36.11	0	378006..378833	-	275	150402293	-	MmarC7_0367	-	transketolase domain-containing protein
364	 36.56	0	379164..380216	+	350	150402294	-	MmarC7_0368	-	cellulase
365	 31.30	0	380297..380788	+	163	150402295	-	MmarC7_0369	-	hypothetical protein
366	 36.03	0	380800..381096	-	98	150402296	-	MmarC7_0370	-	hypothetical protein
367	 33.02	0	381233..382177	+	314	150402297	-	MmarC7_0371	-	hypothetical protein
368	 33.44	0	382304..384148	+	614	150402298	-	MmarC7_0372	-	integral membrane sensor signal transduction histidine kinase
369	 29.96	-1	384189..384752	-	187	150402299	-	MmarC7_0373	-	metal dependent phophohydrolase
370	 33.84	0	384795..385973	-	392	150402300	-	MmarC7_0374	-	translation-associated GTPase
371	 33.33	0	386001..387317	-	438	150402301	-	MmarC7_0375	-	radical SAM domain-containing protein
372	 33.02	0	387651..388598	+	315	150402302	-	MmarC7_0376	-	thiamine-monophosphate kinase
373	 25.58	-2	388592..389107	+	171	150402303	-	MmarC7_0377	-	hypothetical protein
374	 31.70	0	389145..389942	+	265	150402304	-	MmarC7_0378	-	NOL1/NOP2/sun family RNA methylase
375	 32.12	0	389994..392135	+	713	150402305	-	MmarC7_0379	-	RNA-binding S1 domain-containing protein
376	 36.33	0	392179..392778	-	199	150402306	-	MmarC7_0380	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
377	 35.17	0	392820..393308	-	162	150402307	-	MmarC7_0381	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
378	 32.83	0	393417..393815	-	132	150402308	-	MmarC7_0382	-	hypothetical protein
379	 36.27	0	393880..395139	-	419	150402309	-	MmarC7_0383	-	peptide chain release factor 1
380	 33.33	0	395329..395859	+	176	150402310	-	MmarC7_0384	-	tRNA-splicing endonuclease subunit alpha
381	 35.06	0	395878..396921	+	347	150402311	-	MmarC7_0385	-	malate/L-lactate dehydrogenase
382	 36.19	0	397044..398267	+	407	150402312	-	MmarC7_0386	-	beta-lactamase domain-containing protein
383	 36.19	0	398622..399041	+	139	150402313	-	MmarC7_0387	-	rubrerythrin
384	 33.10	0	399182..399604	-	140	150402314	-	MmarC7_0388	-	AsnC family transcriptional regulator
385	 37.70	+1	399814..400614	+	266	150402315	-	MmarC7_0389	-	hydroxyethylthiazole kinase
386	 33.49	0	400604..401227	+	207	150402316	thiE	MmarC7_0390	-	thiamine-phosphate pyrophosphorylase
387	 32.11	0	401404..401649	+	81	150402317	-	MmarC7_0391	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
388	 35.39	0	401853..404477	+	874	150402318	-	MmarC7_0392	-	ATP-dependent helicase
389	 29.40	-1	404480..405190	+	236	150402319	-	MmarC7_0393	-	metallophosphoesterase
390	 30.93	0	405242..405991	-	249	150402320	-	MmarC7_0394	-	bacitracin resistance protein BacA
391	 35.61	0	406143..406931	+	262	150402321	-	MmarC7_0395	-	cell division ATPase MinD
392	 35.94	0	406982..408361	-	459	150402322	-	MmarC7_0396	-	amidophosphoribosyltransferase
393	 35.38	0	408497..408691	-	64	150402323	rpl37e	MmarC7_0397	-	50S ribosomal protein L37e
394	 33.33	0	408769..408987	-	72	150402324	-	MmarC7_0398	-	like-Sm ribonucleoprotein core
395	 40.47	+1	409119..410393	+	424	150402325	-	MmarC7_0399	-	homoaconitate hydratase family protein
396	 33.06	0	410457..410819	-	120	150402326	-	MmarC7_0400	-	signal transduction protein
397	 38.48	+1	410865..411992	-	375	150402327	-	MmarC7_0401	-	NADH-ubiquinone oxidoreductase chain 49kDa
398	 36.44	0	412222..412800	+	192	150402328	-	MmarC7_0402	-	CoB--CoM heterodisulfide reductase
399	 39.76	+1	412813..413715	+	300	150402329	-	MmarC7_0403	-	CoB--CoM heterodisulfide reductase
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.