IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
227	 35.49	0	241544..243538	-	664	150402157	-	MmarC7_0230	-	DNA topoisomerase VI subunit B
228	 33.33	0	243871..244635	+	254	150402158	-	MmarC7_0231	-	hypothetical protein
229	 35.42	0	244722..245489	+	255	150402159	-	MmarC7_0232	-	1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
230	 30.62	0	245491..247074	+	527	150402160	-	MmarC7_0233	-	hypothetical protein
231	 32.57	0	247319..247840	+	173	150402161	-	MmarC7_0234	-	hypothetical protein
232	 33.83	0	247955..248155	-	66	150402162	-	MmarC7_0235	-	XRE family transcriptional regulator
233	 29.72	-1	248152..248538	-	128	150402163	-	MmarC7_0236	-	hypothetical protein
234	 34.49	0	248547..248978	-	143	150402164	-	MmarC7_0237	-	hypothetical protein
235	 34.72	0	249133..249276	-	47	150402165	-	MmarC7_0238	-	hypothetical protein
236	 35.37	0	249509..249802	-	97	150402166	-	MmarC7_0239	-	blue (type1) copper domain-containing protein
237	 37.81	+1	250226..250873	+	215	150402167	-	MmarC7_0240	-	hypothetical protein
238	 32.99	0	250967..251554	-	195	150402168	-	MmarC7_0241	-	protein of unknown function DUF340 membrane
239	 30.12	-1	251551..251799	-	82	150402169	-	MmarC7_0242	-	hypothetical protein
240	 36.04	0	252014..253234	+	406	150402170	-	MmarC7_0243	-	hypothetical protein
241	 36.41	0	253245..254024	-	259	150402171	trpA	MmarC7_0244	-	tryptophan synthase subunit alpha
242	 40.59	+1	254025..255209	-	394	150402172	-	MmarC7_0245	-	tryptophan synthase subunit beta
243	 32.70	0	255206..255832	-	208	150402173	-	MmarC7_0246	-	N-(5'-phosphoribosyl)anthranilate isomerase
244	 33.50	0	255847..256437	-	196	150402174	-	MmarC7_0247	-	anthranilate synthase component II
245	 37.05	0	256418..257737	-	439	150402175	-	MmarC7_0248	-	anthranilate synthase component I
246	 34.99	0	257730..258695	-	321	150402176	-	MmarC7_0249	-	anthranilate phosphoribosyltransferase
247	 32.46	0	258695..259384	-	229	150402177	trpC	MmarC7_0250	-	indole-3-glycerol-phosphate synthase
248	 29.99	-1	259717..260973	-	418	150402178	-	MmarC7_0251	-	dihydroorotase, multifunctional complex type
249	 28.09	-1	260994..261890	-	298	150402179	-	MmarC7_0252	-	RluA family pseudouridine synthase
250	 34.47	0	261998..263665	-	555	150402180	gltX	MmarC7_0253	-	glutamyl-tRNA synthetase
251	 33.47	0	263814..264563	-	249	150402181	-	MmarC7_0254	-	exodeoxyribonuclease III Xth
252	 37.31	0	264852..268097	+	1081	150402182	-	MmarC7_0255	-	carbamoyl-phosphate synthase, large subunit
253	 34.18	0	268162..269229	+	355	150402183	-	MmarC7_0256	-	radical SAM domain-containing protein
254	 31.67	0	269346..269645	+	99	150402184	-	MmarC7_0257	-	transcription factor CBF/NF-Y histone
255	 36.08	0	269851..271089	+	412	150402185	-	MmarC7_0258	-	signal transduction protein
256	 37.67	0	271135..272541	-	468	150402186	-	MmarC7_0259	-	aspartate kinase
257	 37.59	0	272696..274174	+	492	150402187	-	MmarC7_0260	-	(R)-citramalate synthase
258	 27.09	-1	274230..275030	+	266	150402188	-	MmarC7_0261	-	PEGA domain-containing protein
259	 34.83	0	275036..276040	-	334	150402189	-	MmarC7_0262	-	hypothetical protein
260	 34.80	0	276167..277732	-	521	150402190	-	MmarC7_0263	-	hypothetical protein
261	 38.17	+1	277734..278891	-	385	150402191	-	MmarC7_0264	-	MMPL domain-containing protein
262	 29.02	-1	278972..279574	-	200	150402192	-	MmarC7_0265	-	TetR family transcriptional regulator
263	 34.41	0	279686..281818	-	710	150402193	-	MmarC7_0266	-	MCM family protein
264	 30.36	0	281831..282334	-	167	150402194	-	MmarC7_0267	-	hypothetical protein
265	 34.45	0	282457..284157	-	566	150402195	argS	MmarC7_0268	-	arginyl-tRNA synthetase
266	 27.27	-1	285555..285950	-	131	150402196	-	MmarC7_0269	-	hypothetical protein
267	 29.49	-1	285964..286353	-	129	150402197	-	MmarC7_0270	-	hypothetical protein
268	 29.41	-1	286817..287122	-	101	150402198	-	MmarC7_0271	-	hypothetical protein
269	 32.18	0	287134..288348	-	404	150402199	-	MmarC7_0272	-	hypothetical protein
270	 32.88	0	288350..288790	-	146	150402200	-	MmarC7_0273	-	hypothetical protein
271	 27.57	-1	289394..289948	+	184	150402201	-	MmarC7_0274	-	regulatory protein MarR
272	 26.10	-2	290047..291705	+	552	150402202	-	MmarC7_0275	-	hypothetical protein
273	 24.42	-2	291924..292226	+	100	150402203	-	MmarC7_0276	-	hypothetical protein
274	 28.86	-1	293719..294120	-	133	150402204	-	MmarC7_0277	-	hypothetical protein
275	 23.57	-2	294113..294409	-	98	150402205	-	MmarC7_0278	-	hypothetical protein
276	 30.74	0	294485..295333	-	282	150402206	-	MmarC7_0279	-	phage integrase family protein
277	 31.64	0	295349..295879	-	176	150402207	-	MmarC7_0280	-	hypothetical protein
278	 31.13	0	296036..298078	+	680	150402208	-	MmarC7_0281	-	hypothetical protein
279	 26.11	-2	298167..298526	+	119	150402209	-	MmarC7_0282	-	hypothetical protein
280	 30.79	0	298530..299276	-	248	150402210	-	MmarC7_0283	-	extracellular solute-binding protein
281	 35.34	0	299445..300041	-	198	150402211	-	MmarC7_0284	-	hypothetical protein
282	 38.69	+1	300106..300684	-	192	150402212	-	MmarC7_0285	-	adenylate kinase
283	 33.28	0	300802..302727	-	641	150402213	-	MmarC7_0286	-	replication factor A
284	 31.73	0	302881..305811	+	976	150402214	-	MmarC7_0287	-	hypothetical protein
285	 31.83	0	305838..306437	+	199	150402215	-	MmarC7_0288	-	dTMP kinase
286	 37.92	+1	306511..306924	+	137	150402216	-	MmarC7_0289	-	hypothetical protein
287	 34.94	0	306974..307780	+	268	150402217	-	MmarC7_0290	-	band 7 protein
288	 27.92	-1	307860..308339	+	159	150402218	-	MmarC7_0291	-	hypothetical protein
289	 33.33	0	308596..308904	+	102	150402219	-	MmarC7_0292	-	A1A0 ATPase, subunit H
290	 37.51	0	308938..310998	+	686	150402220	-	MmarC7_0293	-	V-type ATP synthase subunit I
291	 44.54	+2	311052..311720	+	222	150402221	-	MmarC7_0294	-	V-type ATP synthase subunit K
292	 33.66	0	311781..312392	+	203	150402222	-	MmarC7_0295	-	H+transporting two-sector ATPase E subunit
293	 35.12	0	312403..313578	+	391	150402223	-	MmarC7_0296	-	V-type ATP synthase subunit C
294	 37.33	0	313600..313899	+	99	150402224	-	MmarC7_0297	-	V-type ATP synthase subunit F
295	 40.83	+1	313915..315675	+	586	150402225	-	MmarC7_0298	-	V-type ATP synthase subunit A
296	 40.96	+1	315710..317098	+	462	150402226	-	MmarC7_0299	-	V-type ATP synthase subunit B
297	 35.35	0	317145..317789	+	214	150402227	-	MmarC7_0300	-	V-type ATP synthase subunit D
298	 34.97	0	317811..318176	+	121	150402228	-	MmarC7_0301	-	hypothetical protein
299	 26.92	-1	318233..318622	+	129	150402229	-	MmarC7_0302	-	hypothetical protein
300	 32.59	0	318820..319089	+	89	150402230	-	MmarC7_0303	-	multiple resistance and pH regulation protein F
301	 35.65	0	319123..319770	-	215	150402231	-	MmarC7_0304	-	hypothetical protein
302	 35.97	0	319843..320637	-	264	150402232	-	MmarC7_0305	-	stationary-phase survival protein SurE
303	 33.46	0	321068..321877	+	269	150402233	-	MmarC7_0306	-	regulatory protein Crp
304	 39.91	+1	321910..322791	-	293	150402234	-	MmarC7_0307	-	CoB--CoM heterodisulfide reductase
305	 37.84	+1	322826..323380	-	184	150402235	-	MmarC7_0308	-	CoB--CoM heterodisulfide reductase
306	 26.47	-2	323512..323817	+	101	150402236	-	MmarC7_0309	-	hypothetical protein
307	 34.66	0	323841..325043	+	400	150402237	-	MmarC7_0310	-	hypothetical protein
308	 28.28	-1	325078..326046	+	322	150402238	-	MmarC7_0311	-	hypothetical protein
309	 35.61	0	326272..327723	+	483	150402239	-	MmarC7_0312	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
310	 31.94	0	327734..329164	+	476	150402240	cysS	MmarC7_0313	-	cysteinyl-tRNA synthetase
311	 30.26	0	329202..329819	+	205	150402241	-	MmarC7_0314	-	hypothetical protein
312	 33.33	0	329853..331697	+	614	150402242	-	MmarC7_0315	-	hypothetical protein
313	 36.89	0	331766..333310	+	514	150402243	-	MmarC7_0316	-	2-isopropylmalate synthase
314	 30.32	0	333414..333977	-	187	150402244	-	MmarC7_0317	-	putative adenylyl cyclase CyaB
315	 32.64	0	333974..334408	-	144	150402245	-	MmarC7_0318	-	BadM/Rrf2 family transcriptional regulator
316	 32.47	0	334507..334968	+	153	150402246	-	MmarC7_0319	-	putative molybdenum cofactor biosynthesis protein C
317	 35.82	0	334987..336471	-	494	150402247	-	MmarC7_0320	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
318	 34.80	0	336611..337567	-	318	150402248	-	MmarC7_0321	-	CaCA family Na(+)/Ca(+) antiporter
319	 34.31	0	337612..338535	-	307	150402249	-	MmarC7_0322	-	signal peptide peptidase SppA, 36K type
320	 32.52	0	338566..339183	-	205	150402250	-	MmarC7_0323	-	hypothetical protein
321	 31.65	0	339278..339694	-	138	150402251	-	MmarC7_0324	-	hypothetical protein
322	 33.87	0	339709..340836	-	375	150402252	-	MmarC7_0325	-	aminotransferase class I and II
323	 36.08	0	341026..341280	+	84	150402253	-	MmarC7_0326	-	putative monovalent cation/H+ antiporter subunit G
324	 34.98	0	341290..341532	+	80	150402254	-	MmarC7_0327	-	hypothetical protein
325	 31.85	0	341599..342069	-	156	150402255	-	MmarC7_0328	-	dUTP diphosphatase
326	 30.99	0	342071..343306	-	411	150402256	-	MmarC7_0329	-	nucleotidyl transferase
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.