IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
141	 28.77	-1	162747..164018	+	423	150402071	-	MmarC7_0144	-	polysaccharide biosynthesis protein
142	 37.16	0	164122..165348	+	408	150402072	argJ	MmarC7_0145	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
143	 30.15	-1	165476..166135	+	219	150402073	-	MmarC7_0146	-	ATP/GTP-binding motif-containing protein
144	 32.57	0	166145..166798	+	217	150402074	-	MmarC7_0147	-	rhodanese domain-containing protein
145	 34.58	0	166828..167868	-	346	150402075	-	MmarC7_0148	-	small GTP-binding protein
146	 35.88	0	167932..168324	-	130	150402076	-	MmarC7_0149	-	hypothetical protein
147	 32.46	0	168336..168563	-	75	150402077	-	MmarC7_0150	-	hypothetical protein
148	 35.29	0	168844..169914	-	356	150402078	-	MmarC7_0151	-	selenophosphate synthetase
149	 36.44	0	169932..170510	-	192	150402079	-	MmarC7_0152	-	hypothetical protein
150	 33.65	0	170520..171452	-	310	150402080	-	MmarC7_0153	-	ribonuclease Z
151	 34.61	0	171480..171872	-	130	150402081	-	MmarC7_0154	-	transcriptional regulator, TrmB
152	 33.33	0	172056..172436	+	126	150402082	-	MmarC7_0155	-	signal transduction protein
153	 35.82	0	172452..172934	+	160	150402083	-	MmarC7_0156	-	SNARE associated Golgi protein
154	 30.77	0	172963..173391	-	142	150402084	-	MmarC7_0157	-	hypothetical protein
155	 36.25	0	173430..174011	-	193	150402085	-	MmarC7_0158	-	NADPH-dependent FMN reductase
156	 30.77	0	174087..174281	-	64	150402086	-	MmarC7_0159	-	4-oxalocrotonate tautomerase
157	 32.28	0	174317..174694	-	125	150402087	-	MmarC7_0160	-	hypothetical protein
158	 35.45	0	174713..175420	-	235	150402088	-	MmarC7_0161	-	hypothetical protein
159	 30.87	0	175504..176112	+	202	150402089	-	MmarC7_0162	-	nucleotidyl transferase
160	 32.53	0	176109..176357	+	82	150402090	-	MmarC7_0163	-	PRC-barrel domain-containing protein
161	 36.09	0	176409..177242	+	277	150402091	-	MmarC7_0164	-	diaminopimelate epimerase
162	 34.11	0	177265..178806	-	513	150402092	-	MmarC7_0165	-	asparagine synthase (glutamine-hydrolyzing)
163	 33.85	0	178900..179667	-	255	150402093	-	MmarC7_0166	-	dihydroorotate dehydrogenase electron transfer subunit
164	 37.58	0	179698..180945	-	415	150402094	-	MmarC7_0167	-	S-adenosyl-L-homocysteine hydrolase
165	 28.23	-1	181108..181440	+	110	150402095	-	MmarC7_0168	-	RNAse P, Rpr2/Rpp21 subunit
166	 28.33	-1	181551..182189	+	212	150402096	-	MmarC7_0169	-	putative phage infection protein
167	 38.25	+1	182198..183010	+	270	150402097	-	MmarC7_0170	-	dihydrodipicolinate reductase
168	 34.00	0	183019..183615	+	198	150402098	-	MmarC7_0171	-	hypothetical protein
169	 32.43	0	183626..184066	+	146	150402099	-	MmarC7_0172	-	putative CheW protein
170	 35.97	0	184109..185209	+	366	150402100	-	MmarC7_0173	-	response regulator receiver modulated CheB methylesterase
171	 35.07	0	185211..187970	+	919	150402101	-	MmarC7_0174	-	CheA signal transduction histidine kinase
172	 37.63	0	187981..188445	+	154	150402102	-	MmarC7_0175	-	chemoreceptor glutamine deamidase CheD
173	 34.12	0	188462..189865	+	467	150402103	-	MmarC7_0176	-	methyl-accepting chemotaxis sensory transducer
174	 30.50	0	189888..190700	-	270	150402104	-	MmarC7_0177	-	protein-glutamate O-methyltransferase
175	 33.99	0	190764..191372	-	202	150402105	-	MmarC7_0178	-	CheC, inhibitor of MCP methylation
176	 33.33	0	191392..192081	-	229	150402106	-	MmarC7_0179	-	CheC, inhibitor of MCP methylation
177	 35.75	0	192097..192468	-	123	150402107	-	MmarC7_0180	-	response regulator receiver protein
178	 34.57	0	192552..193598	-	348	150402108	-	MmarC7_0181	-	hypothetical protein
179	 30.52	0	193840..194337	+	165	150402109	-	MmarC7_0182	-	hypothetical protein
180	 32.38	0	194343..195185	+	280	150402110	-	MmarC7_0183	-	shikimate 5-dehydrogenase
181	 33.60	0	195190..195936	+	248	150402111	-	MmarC7_0184	-	F420-0--gamma-glutamyl ligase
182	 33.20	0	195980..196753	-	257	150402112	-	MmarC7_0185	-	cobalamin 5'-phosphate synthase
183	 35.10	0	196769..197446	-	225	150402113	-	MmarC7_0186	-	HAD family hydrolase
184	 36.49	0	197464..197748	-	94	150402114	-	MmarC7_0187	-	EhbP-like protein
185	 34.53	0	197816..199324	-	502	150402115	-	MmarC7_0188	-	hypothetical protein
186	 33.70	0	199361..200173	-	270	150402116	-	MmarC7_0189	-	hypothetical protein
187	 34.00	0	200187..200639	-	150	150402117	-	MmarC7_0190	-	cytidyltransferase-like protein
188	 33.73	0	200662..201672	-	336	150402118	-	MmarC7_0191	-	hypothetical protein
189	 32.79	0	201765..203606	+	613	150402119	-	MmarC7_0192	-	aldehyde ferredoxin oxidoreductase
190	 37.30	0	203655..205064	-	469	150402120	gatB	MmarC7_0193	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
191	 34.72	0	205240..206106	-	288	150402121	hisG	MmarC7_0194	-	ATP phosphoribosyltransferase
192	 36.41	0	206374..206730	+	118	150402122	-	MmarC7_0195	-	hypothetical protein
193	 29.96	-1	206787..208121	+	444	150402123	-	MmarC7_0196	-	tRNA CCA-pyrophosphorylase
194	 30.12	-1	208134..209564	+	476	150402124	-	MmarC7_0197	-	hypothetical protein
195	 30.29	0	209575..210495	+	306	150402125	-	MmarC7_0198	-	cobalamin biosynthesis protein
196	 39.90	+1	210576..210971	-	131	150402126	-	MmarC7_0199	-	translation initiation factor IF-5A
197	 31.87	0	211114..211866	-	250	150402127	-	MmarC7_0200	-	precorrin-3B C17-methyltransferase
198	 26.79	-1	212147..212620	-	157	150402128	-	MmarC7_0201	-	hypothetical protein
199	 36.92	0	213190..214053	+	287	150402129	-	MmarC7_0202	-	succinyl-CoA synthetase subunit alpha
200	 35.26	0	214101..216545	+	814	150402130	-	MmarC7_0203	-	DNA topoisomerase I
201	 35.76	0	216581..217486	-	301	150402131	-	MmarC7_0204	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
202	 29.64	-1	217573..218574	-	333	150402132	-	MmarC7_0205	-	hypothetical protein
203	 37.20	0	218917..220416	+	499	150402133	-	MmarC7_0206	-	hypothetical protein
204	 38.43	+1	220449..220664	+	71	150402134	-	MmarC7_0207	-	zinc finger protein
205	 41.94	+2	220661..221380	+	239	150402135	-	MmarC7_0208	-	MIP family channel protein
206	 25.19	-2	221510..221767	+	85	150402136	-	MmarC7_0209	-	hypothetical protein
207	 34.54	0	221816..222394	-	192	150402137	-	MmarC7_0210	-	formylmethanofuran dehydrogenase subunit E region
208	 34.86	0	222460..223179	-	239	150402138	-	MmarC7_0211	-	uroporphyrin-III C-methyltransferase
209	 31.48	0	223404..223835	+	143	150402139	-	MmarC7_0212	-	hypothetical protein
210	 34.59	0	223848..225122	+	424	150402140	hisD	MmarC7_0213	-	histidinol dehydrogenase
211	 32.14	0	225155..225574	+	139	150402141	-	MmarC7_0214	-	hypothetical protein
212	 31.18	0	225603..227324	+	573	150402142	-	MmarC7_0215	-	DNA ligase I, ATP-dependent Dnl1
213	 35.93	0	227347..228696	+	449	150402143	-	MmarC7_0216	-	adenylosuccinate lyase
214	 28.50	-1	228771..229184	-	137	150402144	-	MmarC7_0217	-	hypothetical protein
215	 33.02	0	229676..230323	+	215	150402145	-	MmarC7_0218	-	hypothetical protein
216	 31.80	0	230328..231110	+	260	150402146	-	MmarC7_0219	-	cobyrinic acid ac-diamide synthase
217	 28.89	-1	231123..231302	-	59	150402147	-	MmarC7_0220	-	hypothetical protein
218	 36.99	0	231402..231866	-	154	150402148	-	MmarC7_0221	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
219	 37.99	+1	231871..233244	-	457	150402149	-	MmarC7_0222	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
220	 38.61	+1	233258..234412	-	384	150402150	-	MmarC7_0223	-	acetyl-CoA decarbonylase/synthase complex subunit delta
221	 35.59	0	234427..235179	-	250	150402151	-	MmarC7_0224	-	cobyrinic acid ac-diamide synthase
222	 37.19	0	235189..236562	-	457	150402152	-	MmarC7_0225	-	acetyl-CoA decarbonylase/synthase complex subunit beta
223	 37.19	0	236574..237092	-	172	150402153	-	MmarC7_0226	-	acetyl-CoA decarbonylase/synthase complex subunit epsilon
224	 39.79	+1	237102..239438	-	778	150402154	-	MmarC7_0227	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
225	 31.19	0	239724..240515	-	263	150402155	ksgA	MmarC7_0228	-	dimethyladenosine transferase
226	 32.77	0	240526..241413	-	295	150402156	-	MmarC7_0229	-	RNA methyltransferase related protein
227	 35.49	0	241544..243538	-	664	150402157	-	MmarC7_0230	-	DNA topoisomerase VI subunit B
228	 33.33	0	243871..244635	+	254	150402158	-	MmarC7_0231	-	hypothetical protein
229	 35.42	0	244722..245489	+	255	150402159	-	MmarC7_0232	-	1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
230	 30.62	0	245491..247074	+	527	150402160	-	MmarC7_0233	-	hypothetical protein
231	 32.57	0	247319..247840	+	173	150402161	-	MmarC7_0234	-	hypothetical protein
232	 33.83	0	247955..248155	-	66	150402162	-	MmarC7_0235	-	XRE family transcriptional regulator
233	 29.72	-1	248152..248538	-	128	150402163	-	MmarC7_0236	-	hypothetical protein
234	 34.49	0	248547..248978	-	143	150402164	-	MmarC7_0237	-	hypothetical protein
235	 34.72	0	249133..249276	-	47	150402165	-	MmarC7_0238	-	hypothetical protein
236	 35.37	0	249509..249802	-	97	150402166	-	MmarC7_0239	-	blue (type1) copper domain-containing protein
237	 37.81	+1	250226..250873	+	215	150402167	-	MmarC7_0240	-	hypothetical protein
238	 32.99	0	250967..251554	-	195	150402168	-	MmarC7_0241	-	protein of unknown function DUF340 membrane
239	 30.12	-1	251551..251799	-	82	150402169	-	MmarC7_0242	-	hypothetical protein
240	 36.04	0	252014..253234	+	406	150402170	-	MmarC7_0243	-	hypothetical protein
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.