IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1673	 36.72	0	1635095..1635655	+	186	150403603	-	MmarC7_1690	-	hypothetical protein
1674	 27.81	-1	1635703..1636191	+	162	150403604	-	MmarC7_1691	-	hypothetical protein
1675	 37.15	0	1636240..1637865	-	541	150403605	-	MmarC7_1692	-	Na/Pi-cotransporter II-related protein
1676	 38.44	+1	1638237..1638902	+	221	150403606	rps2P	MmarC7_1693	-	30S ribosomal protein S2
1677	 33.50	0	1638932..1639540	+	202	150403607	-	MmarC7_1694	-	hypothetical protein
1678	 37.63	0	1639553..1640227	+	224	150403608	-	MmarC7_1695	-	30S ribosomal protein S3Ae
1679	 31.99	0	1640312..1641202	+	296	150403609	-	MmarC7_1696	-	hypothetical protein
1680	 34.36	0	1641213..1641407	+	64	150403610	-	MmarC7_1697	-	hypothetical protein
1681	 34.42	0	1641508..1642428	+	306	150403611	-	MmarC7_1698	-	2-dehydropantoate 2-reductase
1682	 30.65	0	1642437..1643666	-	409	150403612	-	MmarC7_1699	-	TPR repeat-containing protein
1683	 30.04	-1	1644056..1645453	-	465	150403613	-	MmarC7_1700	-	hypothetical protein
1684	 33.54	0	1645541..1646017	-	158	150403614	-	MmarC7_1701	-	hypothetical protein
1685	 32.72	0	1646141..1647121	+	326	150403615	-	MmarC7_1702	-	hypothetical protein
1686	 39.29	+1	1647224..1648801	-	525	150403616	-	MmarC7_1703	-	Na+ antiporter NhaC
1687	 35.34	0	1648892..1649587	-	231	150403617	upp	MmarC7_1704	-	uracil phosphoribosyltransferase
1688	 40.26	+1	1649624..1650865	-	413	150403618	-	MmarC7_1705	-	uracil-xanthine permease
1689	 34.04	0	1651251..1651817	-	188	150403619	-	MmarC7_1706	-	hypothetical protein
1690	 32.81	0	1651918..1653069	-	383	150403620	-	MmarC7_1707	-	signal recognition particle-docking protein FtsY
1691	 36.56	0	1653224..1653688	+	154	150403621	-	MmarC7_1708	-	heat shock protein HSP20
1692	 31.62	0	1653795..1654436	+	213	150403622	-	MmarC7_1709	-	SAM-binding motif-containing protein
1693	 40.17	+1	1654839..1655657	+	272	150403623	-	MmarC7_1710	-	fructose-bisphosphate aldolase
1694	 36.24	0	1655748..1656401	+	217	150403624	-	MmarC7_1711	-	triosephosphate isomerase
1695	 37.68	0	1656882..1657088	+	68	150403625	-	MmarC7_1712	-	FeoA family protein
1696	 33.23	0	1657229..1659166	+	645	150403626	-	MmarC7_1713	-	ferrous iron transport protein B
1697	 26.57	-1	1659224..1659430	+	68	150403627	-	MmarC7_1714	-	hypothetical protein
1698	 33.27	0	1659436..1661049	-	537	150403628	-	MmarC7_1715	-	O-phosphoseryl-tRNA synthetase
1699	 39.40	+1	1661145..1662446	+	433	150403629	-	MmarC7_1716	-	xanthine/uracil/vitamin C permease
1700	 28.92	-1	1662511..1663212	-	233	150403630	-	MmarC7_1717	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1701	 31.31	0	1663218..1663760	-	180	150403631	-	MmarC7_1718	-	hypothetical protein
1702	 32.55	0	1663846..1664736	-	296	150403632	-	MmarC7_1719	-	hypothetical protein
1703	 32.06	0	1664805..1665671	-	288	150403633	-	MmarC7_1720	-	aminoacyl-tRNA synthetase, class II
1704	 36.48	0	1665755..1667662	-	635	150403634	-	MmarC7_1721	-	beta-lactamase domain-containing protein
1705	 38.48	+1	1667799..1668458	-	219	150403635	-	MmarC7_1722	-	proteasome endopeptidase complex
1706	 33.98	0	1668556..1669938	-	460	150403636	-	MmarC7_1723	-	prolyl-tRNA synthetase
1707	 34.48	0	1670200..1673067	+	955	150403637	leuS	MmarC7_1724	-	leucyl-tRNA synthetase
1708	 31.76	0	1673094..1673411	+	105	150403638	-	MmarC7_1725	-	hypothetical protein
1709	 34.75	0	1673479..1674822	-	447	150403639	-	MmarC7_1726	-	MATE efflux family protein
1710	 30.56	0	1674843..1675382	-	179	150403640	-	MmarC7_1727	-	PadR-like family transcriptional regulator
1711	 33.78	0	1675582..1676025	+	147	150403641	-	MmarC7_1728	-	hypothetical protein
1712	 34.13	0	1676067..1676945	+	292	150403642	-	MmarC7_1729	-	alpha-L-glutamate ligase
1713	 28.64	-1	1676942..1677964	-	340	150403643	-	MmarC7_1730	-	hypothetical protein
1714	 38.05	+1	1678004..1678873	-	289	150403644	-	MmarC7_1731	-	cobyrinic acid ac-diamide synthase
1715	 31.06	0	1678965..1680065	-	366	150403645	-	MmarC7_1732	-	UDP-N-acetylglucosamine 2-epimerase
1716	 33.88	0	1680070..1681353	-	427	150403646	-	MmarC7_1733	-	UDP-glucose/GDP-mannose dehydrogenase
1717	 36.68	0	1681366..1682619	-	417	150403647	-	MmarC7_1734	-	sodium/hydrogen exchanger
1718	 38.12	+1	1682824..1683534	+	236	150403648	-	MmarC7_1735	-	hypothetical protein
1719	 34.67	0	1683974..1684570	+	198	150403649	-	MmarC7_1736	-	hypothetical protein
1720	 34.45	0	1684737..1687517	+	926	150403650	-	MmarC7_1737	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1721	 29.65	-1	1687526..1688584	+	352	150403651	-	MmarC7_1738	-	magnesium and cobalt transport protein CorA
1722	 28.92	-1	1688674..1689420	+	248	150403652	-	MmarC7_1739	-	extracellular solute-binding protein
1723	 36.10	0	1689896..1691632	+	578	150403653	-	MmarC7_1740	-	thiamine pyrophosphate binding domain-containing protein
1724	 34.92	0	1691632..1692198	+	188	150403654	-	MmarC7_1741	-	indolepyruvate oxidoreductase subunit B
1725	 37.11	0	1692209..1693507	+	432	150403655	-	MmarC7_1742	-	phenylacetate--CoA ligase
1726	 32.39	0	1693521..1693946	+	141	150403656	-	MmarC7_1743	-	amino acid-binding ACT domain-containing protein
1727	 29.80	-1	1693949..1694485	-	178	150403657	-	MmarC7_1744	-	hypothetical protein
1728	 34.19	0	1694871..1695221	+	116	150403658	-	MmarC7_1745	-	hypothetical protein
1729	 25.06	-2	1695436..1695870	+	144	150403659	-	MmarC7_1746	-	hypothetical protein
1730	 31.18	0	1695874..1696431	-	185	150403660	-	MmarC7_1747	-	hypothetical protein
1731	 34.98	0	1696526..1698466	-	646	150403661	-	MmarC7_1748	-	excinuclease ABC subunit B
1732	 30.18	-1	1698463..1700046	-	527	150403662	uvrC	MmarC7_1749	-	excinuclease ABC subunit C
1733	 35.19	0	1700054..1702909	-	951	150403663	-	MmarC7_1750	-	excinuclease ABC, A subunit
1734	 30.95	0	1703036..1703455	-	139	150403664	-	MmarC7_1751	-	hypothetical protein
1735	 28.43	-1	1703465..1703668	-	67	150403665	-	MmarC7_1752	-	exodeoxyribonuclease VII small subunit
1736	 30.64	0	1703689..1704912	-	407	150403666	xseA	MmarC7_1753	-	exodeoxyribonuclease VII large subunit
1737	 32.01	0	1705007..1706365	-	452	150403667	-	MmarC7_1754	-	multi anti extrusion protein MatE
1738	 31.45	0	1706485..1706802	+	105	150403668	-	MmarC7_1755	-	hypothetical protein
1739	 30.73	0	1706877..1707797	+	306	150403669	-	MmarC7_1756	-	site-specific DNA-methyltransferase (adenine-specific)
1740	 31.76	0	1708111..1708365	+	84	150403670	-	MmarC7_1757	-	PRC-barrel domain-containing protein
1741	 35.07	0	1708389..1709192	+	267	150403671	-	MmarC7_1758	-	L-aspartate dehydrogenase
1742	 33.66	0	1709245..1710174	-	309	150403672	-	MmarC7_1759	-	elongation factor Tu domain-containing protein
1743	 36.96	0	1710459..1711010	-	183	150403673	-	MmarC7_1760	-	DNA protection protein DPS
1744	 38.15	+1	1711139..1711948	-	269	150403674	-	MmarC7_1761	-	zinc/iron permease
1745	 37.61	0	1712144..1712797	+	217	150403675	-	MmarC7_1762	-	peroxiredoxin
1746	 28.57	-1	1713622..1713852	+	76	150403676	-	MmarC7_1763	-	hypothetical protein
1747	 35.25	0	1715076..1717265	+	729	150403677	-	MmarC7_1764	-	methyl-accepting chemotaxis sensory transducer
1748	 34.88	0	1717431..1718075	-	214	150403678	-	MmarC7_1765	-	hypothetical protein
1749	 37.95	+1	1718444..1718746	-	100	150403679	-	MmarC7_1766	-	hypothetical protein
1750	 30.41	0	1718743..1719255	-	170	150403680	-	MmarC7_1767	-	hypothetical protein
1751	 37.17	0	1719257..1719673	-	138	150403681	-	MmarC7_1768	-	hypothetical protein
1752	 38.75	+1	1719808..1725213	-	1801	150403682	-	MmarC7_1769	-	cobaltochelatase
1753	 37.68	0	1725588..1726370	+	260	150403683	-	MmarC7_1770	-	chymotrypsin serine protease
1754	 36.52	0	1726487..1727146	-	219	150403684	-	MmarC7_1771	-	putative ATP binding protein
1755	 35.38	0	1727263..1728042	-	259	150403685	-	MmarC7_1772	-	chymotrypsin serine protease
1756	 33.70	0	1728216..1730372	+	718	150403686	-	MmarC7_1773	-	hypothetical protein
1757	 33.33	0	1730572..1731174	+	200	150403687	-	MmarC7_1774	-	hypothetical protein
1758	 32.01	0	1731369..1732124	+	251	150403688	-	MmarC7_1775	-	extracellular solute-binding protein
1759	 38.04	+1	1732528..1733589	-	353	150403689	-	MmarC7_1776	-	hypothetical protein
1760	 32.01	0	1734051..1734428	-	125	150403690	-	MmarC7_1777	-	hypothetical protein
1761	 33.22	0	1735056..1735964	-	302	150403691	-	MmarC7_1778	-	aminoglycoside phosphotransferase
1762	 30.08	-1	1736063..1737016	-	317	150403692	-	MmarC7_1779	-	nucleoside recognition domain-containing protein
1763	 39.49	+1	1737300..1738079	-	259	150403693	-	MmarC7_1780	-	cobyrinic acid ac-diamide synthase
1764	 36.13	0	1738307..1739164	-	285	150403694	-	MmarC7_1781	-	methyltransferase type 11
1765	 32.44	0	1740454..1742238	-	594	150403695	-	MmarC7_1783	-	lysine 2,3-aminomutase YodO family protein
1766	 32.71	0	1743101..1744063	+	320	150403696	-	MmarC7_1784	-	CaCA family Na(+)/Ca(+) antiporter
1767	 32.39	0	1744437..1745069	-	210	150403697	-	MmarC7_1785	-	NADPH-dependent FMN reductase
1768	 31.54	0	1746251..1747810	+	519	150403698	-	MmarC7_1786	-	putative transcriptional regulator
1769	 27.20	-1	1749574..1750062	-	162	150403699	-	MmarC7_1788	-	hypothetical protein
1770	 34.25	0	1750094..1752283	-	729	150403700	-	MmarC7_1789	-	methyl-accepting chemotaxis sensory transducer
1771	 27.71	-1	1752538..1753035	+	165	150403701	-	MmarC7_1790	-	MarR family transcriptional regulator
1772	 32.39	0	1753553..1754191	-	212	150403702	-	MmarC7_1791	-	GCN5-related N-acetyltransferase
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.