IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1619	 27.43	-1	1585749..1586273	-	174	150403549	-	MmarC7_1634	-	2'-5' RNA ligase
1620	 30.61	0	1586282..1586428	-	48	150403550	-	MmarC7_1635	-	hypothetical protein
1621	 32.96	0	1586508..1587308	+	266	150403551	-	MmarC7_1636	-	acetolactate decarboxylase
1622	 39.41	+1	1587405..1587980	+	191	150403552	-	MmarC7_1637	-	NADPH-dependent FMN reductase
1623	 31.71	0	1588194..1589486	-	430	150403553	-	MmarC7_1638	-	tRNA pseudouridine synthase D TruD
1624	 31.76	0	1589613..1590887	+	424	150403554	-	MmarC7_1639	-	hypothetical protein
1625	 31.48	0	1590915..1591562	+	215	150403555	radB	MmarC7_1640	-	DNA repair and recombination protein RadB
1626	 31.82	0	1591671..1592000	+	109	150403556	-	MmarC7_1641	-	hypothetical protein
1627	 35.88	0	1592010..1592402	+	130	150403557	-	MmarC7_1642	-	hypothetical protein
1628	 37.78	+1	1592425..1594020	+	531	150403558	-	MmarC7_1643	-	ABC transporter related
1629	 28.64	-1	1594041..1594850	-	269	150403559	-	MmarC7_1644	-	xylose isomerase domain-containing protein
1630	 33.77	0	1594897..1595805	+	302	150403560	-	MmarC7_1645	-	ADP-ribosylation/crystallin J1
1631	 34.83	0	1595869..1596537	+	222	150403561	-	MmarC7_1646	-	hypothetical protein
1632	 34.58	0	1596601..1597002	+	133	150403562	-	MmarC7_1647	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1633	 36.75	0	1597115..1597348	-	77	150403563	-	MmarC7_1648	-	50S ribosomal protein L14e
1634	 39.11	+1	1597431..1597967	-	178	150403564	-	MmarC7_1649	-	cytidylate kinase
1635	 37.04	0	1597977..1598246	-	89	150403565	rpl34e	MmarC7_1650	-	50S ribosomal protein L34e
1636	 34.83	0	1598577..1598777	+	66	150403566	-	MmarC7_1651	-	TOBE domain-containing protein
1637	 31.33	0	1598945..1599343	+	132	150403567	-	MmarC7_1652	-	transcriptional regulator, TrmB
1638	 33.85	0	1599546..1601489	-	647	150403568	-	MmarC7_1653	-	ferrous iron transport protein B
1639	 38.16	+1	1601751..1601957	-	68	150403569	-	MmarC7_1654	-	FeoA family protein
1640	 34.07	0	1602070..1602474	+	134	150403570	-	MmarC7_1655	-	iron dependent repressor
1641	 29.85	-1	1602640..1603815	+	391	150403571	-	MmarC7_1656	-	ATP/GTP-binding motif-containing protein
1642	 37.26	0	1603923..1604507	+	194	150403572	-	MmarC7_1657	-	rubrerythrin
1643	 35.34	0	1604648..1605841	+	397	150403573	-	MmarC7_1658	-	hypothetical protein
1644	 34.99	0	1605843..1606568	+	241	150403574	-	MmarC7_1659	-	ABC transporter related
1645	 34.23	0	1606805..1608037	+	410	150403575	-	MmarC7_1660	-	hypothetical protein
1646	 30.95	0	1608077..1608622	+	181	150403576	-	MmarC7_1661	-	regulatory protein ArsR
1647	 32.57	0	1608733..1610973	+	746	150403577	-	MmarC7_1662	-	hypothetical protein
1648	 35.45	0	1611067..1611255	-	62	150403578	-	MmarC7_1663	-	ribosomal protein L24E
1649	 38.53	+1	1611275..1611505	-	76	150403579	rps28e	MmarC7_1664	-	30S ribosomal protein S28e
1650	 35.04	0	1611544..1611954	-	136	150403580	rpl7ae	MmarC7_1665	-	50S ribosomal protein L7Ae
1651	 32.62	0	1612044..1613021	-	325	150403581	-	MmarC7_1666	-	hypothetical protein
1652	 33.83	0	1613164..1614177	+	337	150403582	-	MmarC7_1667	-	hypothetical protein
1653	 34.13	0	1614182..1615057	-	291	150403583	-	MmarC7_1668	-	cation diffusion facilitator family transporter
1654	 35.45	0	1615074..1616018	-	314	150403584	-	MmarC7_1669	-	malate dehydrogenase
1655	 33.77	0	1616204..1616431	+	75	150403585	-	MmarC7_1670	-	hypothetical protein
1656	 30.46	0	1616434..1616850	-	138	150403586	-	MmarC7_1671	-	hypothetical protein
1657	 29.88	-1	1616854..1617867	-	337	150403587	-	MmarC7_1672	-	RNA 3'-terminal-phosphate cyclase
1658	 31.38	0	1617878..1619413	-	511	150403588	-	MmarC7_1673	-	carbamoyltransferase
1659	 39.46	+1	1619576..1621339	+	587	150403589	-	MmarC7_1674	-	acetolactate synthase catalytic subunit
1660	 36.47	0	1621353..1621862	+	169	150403590	ilvH	MmarC7_1675	-	acetolactate synthase 3 regulatory subunit
1661	 34.78	0	1623177..1624142	-	321	150403591	-	MmarC7_1678	-	bile acid:sodium symporter
1662	 35.20	0	1624369..1626138	-	589	150403592	-	MmarC7_1679	-	TPR repeat-containing protein
1663	 37.16	0	1626688..1627680	+	330	150403593	-	MmarC7_1680	-	ketol-acid reductoisomerase
1664	 31.28	0	1627738..1627932	+	64	150403594	-	MmarC7_1681	-	thiamineS protein
1665	 33.15	0	1628009..1628560	+	183	150403595	-	MmarC7_1682	-	hypothetical protein
1666	 34.80	0	1628627..1628899	-	90	150403596	-	MmarC7_1683	-	hypothetical protein
1667	 38.26	+1	1629000..1629893	-	297	150403597	-	MmarC7_1684	-	radical SAM domain-containing protein
1668	 34.65	0	1629985..1631196	-	403	150403598	-	MmarC7_1685	-	peptidase U32
1669	 37.38	0	1631239..1631757	-	172	150403599	-	MmarC7_1686	-	adenine phosphoribosyltransferase
1670	 36.64	0	1632297..1633172	+	291	150403600	-	MmarC7_1687	-	putative ATP binding related protein
1671	 24.24	-2	1633169..1633399	+	76	150403601	-	MmarC7_1688	-	hypothetical protein
1672	 37.78	+1	1633448..1635067	+	539	150403602	-	MmarC7_1689	-	sulphate transporter
1673	 36.72	0	1635095..1635655	+	186	150403603	-	MmarC7_1690	-	hypothetical protein
1674	 27.81	-1	1635703..1636191	+	162	150403604	-	MmarC7_1691	-	hypothetical protein
1675	 37.15	0	1636240..1637865	-	541	150403605	-	MmarC7_1692	-	Na/Pi-cotransporter II-related protein
1676	 38.44	+1	1638237..1638902	+	221	150403606	rps2P	MmarC7_1693	-	30S ribosomal protein S2
1677	 33.50	0	1638932..1639540	+	202	150403607	-	MmarC7_1694	-	hypothetical protein
1678	 37.63	0	1639553..1640227	+	224	150403608	-	MmarC7_1695	-	30S ribosomal protein S3Ae
1679	 31.99	0	1640312..1641202	+	296	150403609	-	MmarC7_1696	-	hypothetical protein
1680	 34.36	0	1641213..1641407	+	64	150403610	-	MmarC7_1697	-	hypothetical protein
1681	 34.42	0	1641508..1642428	+	306	150403611	-	MmarC7_1698	-	2-dehydropantoate 2-reductase
1682	 30.65	0	1642437..1643666	-	409	150403612	-	MmarC7_1699	-	TPR repeat-containing protein
1683	 30.04	-1	1644056..1645453	-	465	150403613	-	MmarC7_1700	-	hypothetical protein
1684	 33.54	0	1645541..1646017	-	158	150403614	-	MmarC7_1701	-	hypothetical protein
1685	 32.72	0	1646141..1647121	+	326	150403615	-	MmarC7_1702	-	hypothetical protein
1686	 39.29	+1	1647224..1648801	-	525	150403616	-	MmarC7_1703	-	Na+ antiporter NhaC
1687	 35.34	0	1648892..1649587	-	231	150403617	upp	MmarC7_1704	-	uracil phosphoribosyltransferase
1688	 40.26	+1	1649624..1650865	-	413	150403618	-	MmarC7_1705	-	uracil-xanthine permease
1689	 34.04	0	1651251..1651817	-	188	150403619	-	MmarC7_1706	-	hypothetical protein
1690	 32.81	0	1651918..1653069	-	383	150403620	-	MmarC7_1707	-	signal recognition particle-docking protein FtsY
1691	 36.56	0	1653224..1653688	+	154	150403621	-	MmarC7_1708	-	heat shock protein HSP20
1692	 31.62	0	1653795..1654436	+	213	150403622	-	MmarC7_1709	-	SAM-binding motif-containing protein
1693	 40.17	+1	1654839..1655657	+	272	150403623	-	MmarC7_1710	-	fructose-bisphosphate aldolase
1694	 36.24	0	1655748..1656401	+	217	150403624	-	MmarC7_1711	-	triosephosphate isomerase
1695	 37.68	0	1656882..1657088	+	68	150403625	-	MmarC7_1712	-	FeoA family protein
1696	 33.23	0	1657229..1659166	+	645	150403626	-	MmarC7_1713	-	ferrous iron transport protein B
1697	 26.57	-1	1659224..1659430	+	68	150403627	-	MmarC7_1714	-	hypothetical protein
1698	 33.27	0	1659436..1661049	-	537	150403628	-	MmarC7_1715	-	O-phosphoseryl-tRNA synthetase
1699	 39.40	+1	1661145..1662446	+	433	150403629	-	MmarC7_1716	-	xanthine/uracil/vitamin C permease
1700	 28.92	-1	1662511..1663212	-	233	150403630	-	MmarC7_1717	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1701	 31.31	0	1663218..1663760	-	180	150403631	-	MmarC7_1718	-	hypothetical protein
1702	 32.55	0	1663846..1664736	-	296	150403632	-	MmarC7_1719	-	hypothetical protein
1703	 32.06	0	1664805..1665671	-	288	150403633	-	MmarC7_1720	-	aminoacyl-tRNA synthetase, class II
1704	 36.48	0	1665755..1667662	-	635	150403634	-	MmarC7_1721	-	beta-lactamase domain-containing protein
1705	 38.48	+1	1667799..1668458	-	219	150403635	-	MmarC7_1722	-	proteasome endopeptidase complex
1706	 33.98	0	1668556..1669938	-	460	150403636	-	MmarC7_1723	-	prolyl-tRNA synthetase
1707	 34.48	0	1670200..1673067	+	955	150403637	leuS	MmarC7_1724	-	leucyl-tRNA synthetase
1708	 31.76	0	1673094..1673411	+	105	150403638	-	MmarC7_1725	-	hypothetical protein
1709	 34.75	0	1673479..1674822	-	447	150403639	-	MmarC7_1726	-	MATE efflux family protein
1710	 30.56	0	1674843..1675382	-	179	150403640	-	MmarC7_1727	-	PadR-like family transcriptional regulator
1711	 33.78	0	1675582..1676025	+	147	150403641	-	MmarC7_1728	-	hypothetical protein
1712	 34.13	0	1676067..1676945	+	292	150403642	-	MmarC7_1729	-	alpha-L-glutamate ligase
1713	 28.64	-1	1676942..1677964	-	340	150403643	-	MmarC7_1730	-	hypothetical protein
1714	 38.05	+1	1678004..1678873	-	289	150403644	-	MmarC7_1731	-	cobyrinic acid ac-diamide synthase
1715	 31.06	0	1678965..1680065	-	366	150403645	-	MmarC7_1732	-	UDP-N-acetylglucosamine 2-epimerase
1716	 33.88	0	1680070..1681353	-	427	150403646	-	MmarC7_1733	-	UDP-glucose/GDP-mannose dehydrogenase
1717	 36.68	0	1681366..1682619	-	417	150403647	-	MmarC7_1734	-	sodium/hydrogen exchanger
1718	 38.12	+1	1682824..1683534	+	236	150403648	-	MmarC7_1735	-	hypothetical protein
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.