IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1529	 37.95	+1	1508003..1508803	-	266	150403459	-	MmarC7_1544	-	hypothetical protein
1530	 32.46	0	1508845..1509303	-	152	150403460	-	MmarC7_1545	-	hypothetical protein
1531	 32.09	0	1509809..1510534	+	241	150403461	-	MmarC7_1546	-	hypothetical protein
1532	 28.99	-1	1510549..1511169	+	206	150403462	-	MmarC7_1547	-	hypothetical protein
1533	 33.88	0	1511170..1511352	-	60	150403463	-	MmarC7_1548	-	hypothetical protein
1534	 33.45	0	1511803..1513461	-	552	150403464	-	MmarC7_1549	-	sulfate transporter
1535	 30.24	0	1513621..1514298	+	225	150403465	-	MmarC7_1550	-	DNA polymerase beta subunit
1536	 31.57	0	1514285..1514794	+	169	150403466	-	MmarC7_1551	-	hypothetical protein
1537	 31.57	0	1515045..1516124	-	359	150403467	-	MmarC7_1552	-	MscS mechanosensitive ion channel
1538	 32.55	0	1516125..1516763	-	212	150403468	-	MmarC7_1553	-	hypothetical protein
1539	 31.40	0	1516947..1517360	-	137	150403469	-	MmarC7_1554	-	hypothetical protein
1540	 31.75	0	1517387..1518457	-	356	150403470	-	MmarC7_1555	-	DNA-(apurinic or apyrimidinic site) lyase
1541	 29.41	-1	1518549..1519160	+	203	150403471	-	MmarC7_1556	-	hypothetical protein
1542	 26.46	-2	1519384..1519674	+	96	150403472	-	MmarC7_1557	-	hypothetical protein
1543	 38.37	+1	1519842..1520834	+	330	150403473	-	MmarC7_1558	-	3-isopropylmalate dehydrogenase
1544	 33.06	0	1520917..1521654	+	245	150403474	-	MmarC7_1559	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1545	 33.33	0	1521692..1522333	+	213	150403475	-	MmarC7_1560	-	phosphoserine phosphatase SerB
1546	 31.34	0	1522459..1523061	+	200	150403476	-	MmarC7_1561	-	hypothetical protein
1547	 32.95	0	1523100..1523615	+	171	150403477	-	MmarC7_1562	-	hypothetical protein
1548	 32.64	0	1523630..1524640	+	336	150403478	-	MmarC7_1563	-	radical SAM domain-containing protein
1549	 34.63	0	1524668..1526518	+	616	150403479	-	MmarC7_1564	-	molybdenum cofactor synthesis domain-containing protein
1550	 37.00	0	1526607..1527233	+	208	150403480	-	MmarC7_1565	-	AMMECR1 domain-containing protein
1551	 32.95	0	1527294..1528589	+	431	150403481	-	MmarC7_1566	-	phosphoesterase domain-containing protein
1552	 36.13	0	1528708..1529280	+	190	150403482	-	MmarC7_1567	-	imidazoleglycerol-phosphate dehydratase
1553	 34.06	0	1529290..1529838	+	182	150403483	-	MmarC7_1568	-	hypothetical protein
1554	 34.72	0	1530008..1530802	+	264	150403484	-	MmarC7_1569	-	extracellular solute-binding protein
1555	 33.33	0	1530837..1531496	+	219	150403485	-	MmarC7_1570	-	polar amino acid ABC transporter, inner membrane subunit
1556	 29.06	-1	1531551..1532462	+	303	150403486	-	MmarC7_1571	-	hypothetical protein
1557	 36.39	0	1532481..1533395	-	304	150403487	-	MmarC7_1572	-	ornithine carbamoyltransferase
1558	 32.50	0	1533516..1534118	+	200	150403488	-	MmarC7_1573	-	methyltransferase small
1559	 31.17	0	1534160..1534852	+	230	150403489	-	MmarC7_1574	-	peptidase A24B, FlaK-like protein
1560	 33.33	0	1534849..1535691	-	280	150403490	-	MmarC7_1575	-	TatD-related deoxyribonuclease
1561	 29.23	-1	1535693..1536106	-	137	150403491	-	MmarC7_1576	-	hypothetical protein
1562	 30.64	0	1536118..1536414	-	98	150403492	-	MmarC7_1577	-	hypothetical protein
1563	 35.47	0	1536536..1537051	+	171	150403493	-	MmarC7_1578	-	PfpI family intracellular peptidase
1564	 30.71	0	1537115..1537876	+	253	150403494	-	MmarC7_1579	-	protein of unknown function Met10
1565	 32.87	0	1537889..1538323	-	144	150403495	-	MmarC7_1580	-	alkylhydroperoxidase
1566	 30.58	0	1538419..1538709	-	96	150403496	-	MmarC7_1581	-	hypothetical protein
1567	 29.40	-1	1538855..1539337	-	160	150403497	-	MmarC7_1582	-	hypothetical protein
1568	 30.91	0	1539403..1540311	-	302	150403498	-	MmarC7_1583	-	hypothetical protein
1569	 28.46	-1	1540330..1541253	-	307	150403499	-	MmarC7_1584	-	hypothetical protein
1570	 37.27	0	1541290..1542939	-	549	150403500	-	MmarC7_1585	-	acyl-CoA synthetase
1571	 34.56	0	1542961..1543368	-	135	150403501	-	MmarC7_1586	-	hypothetical protein
1572	 36.79	0	1543390..1543968	-	192	150403502	-	MmarC7_1587	-	helix-turn-helix domain-containing protein
1573	 34.46	0	1544115..1545713	-	532	150403503	-	MmarC7_1588	-	S-layer protein
1574	 29.14	-1	1545773..1546273	-	166	150403504	-	MmarC7_1589	-	hypothetical protein
1575	 33.00	0	1546278..1547174	-	298	150403505	moaA	MmarC7_1590	-	molybdenum cofactor biosynthesis protein A
1576	 34.85	0	1547304..1548026	-	240	150403506	-	MmarC7_1591	-	peptidylprolyl isomerase FKBP-type
1577	 33.18	0	1548091..1548735	+	214	150403507	-	MmarC7_1592	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
1578	 39.91	+1	1548843..1550606	-	587	150403508	-	MmarC7_1593	-	radical SAM domain-containing protein
1579	 37.60	0	1550606..1551262	-	218	150403509	-	MmarC7_1594	-	methyltransferase type 11
1580	 29.17	-1	1552017..1552136	-	39	150403510	-	MmarC7_1595	-	hypothetical protein
1581	 33.33	0	1552153..1552392	-	79	150403511	gatC	MmarC7_1596	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1582	 37.13	0	1552410..1553279	-	289	150403512	-	MmarC7_1597	-	dihydrodipicolinate synthase
1583	 35.42	0	1553290..1553481	-	63	150403513	rps17E	MmarC7_1598	-	30S ribosomal protein S17e
1584	 35.05	0	1553562..1553852	-	96	150403514	-	MmarC7_1599	-	chorismate mutase
1585	 32.64	0	1553953..1554669	-	238	150403515	-	MmarC7_1600	-	hypothetical protein
1586	 31.50	0	1554679..1555389	-	236	150403516	-	MmarC7_1601	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1587	 30.52	0	1555484..1556266	+	260	150403517	-	MmarC7_1602	-	hypothetical protein
1588	 32.08	0	1556408..1557124	+	238	150403518	-	MmarC7_1603	-	AzlC family protein
1589	 35.92	0	1557117..1557425	+	102	150403519	-	MmarC7_1604	-	branched-chain amino acid transport
1590	 35.55	0	1557483..1560143	-	886	150403520	valS	MmarC7_1605	-	valyl-tRNA synthetase
1591	 37.21	0	1560555..1560992	+	145	150403521	-	MmarC7_1606	-	UspA domain-containing protein
1592	 29.18	-1	1560998..1561696	-	232	150403522	-	MmarC7_1607	-	HhH-GPD family protein
1593	 31.44	0	1561729..1562892	-	387	150403523	-	MmarC7_1608	-	sodium/hydrogen exchanger
1594	 33.07	0	1562973..1563740	+	255	150403524	-	MmarC7_1609	-	diphthine synthase
1595	 36.90	0	1563748..1563915	-	55	150403525	-	MmarC7_1610	-	hypothetical protein
1596	 33.46	0	1564212..1565744	+	510	150403526	-	MmarC7_1611	-	radical SAM domain-containing protein
1597	 31.03	0	1565748..1566443	-	231	150403527	-	MmarC7_1612	-	glycosyl transferase family protein
1598	 31.79	0	1566478..1567125	-	215	150403528	-	MmarC7_1613	-	hypothetical protein
1599	 30.65	0	1567137..1567322	-	61	150403529	-	MmarC7_1614	-	hypothetical protein
1600	 38.68	+1	1567319..1568104	-	261	150403530	-	MmarC7_1615	-	cell division ATPase MinD
1601	 24.87	-2	1568182..1568748	-	188	150403531	-	MmarC7_1616	-	hypothetical protein
1602	 34.55	0	1568765..1570075	-	436	150403532	-	MmarC7_1617	-	soluble liver antigen/liver pancreas antigen
1603	 35.67	0	1570269..1571726	+	485	150403533	-	MmarC7_1618	-	Pre-mRNA processing ribonucleoprotein, binding region
1604	 33.05	0	1571744..1572442	+	232	150403534	-	MmarC7_1619	-	fibrillarin
1605	 33.64	0	1572592..1573878	+	428	150403535	-	MmarC7_1620	-	phosphoglycerate mutase
1606	 28.25	-1	1573884..1574630	-	248	150403536	-	MmarC7_1621	-	precorrin-6x reductase
1607	 33.04	0	1574666..1575337	-	223	150403537	-	MmarC7_1622	-	hypothetical protein
1608	 32.15	0	1575458..1576132	-	224	150403538	-	MmarC7_1623	-	hypothetical protein
1609	 34.74	0	1576254..1576892	-	212	150403539	-	MmarC7_1624	-	orotidine 5'-phosphate decarboxylase
1610	 42.22	+2	1577052..1577366	+	104	150403540	-	MmarC7_1625	-	translation initiation factor IF-1A
1611	 32.85	0	1577376..1578197	+	273	150403541	-	MmarC7_1626	-	non-specific serine/threonine protein kinase
1612	 36.40	0	1578278..1578832	+	184	150403542	-	MmarC7_1627	-	putative RNA-processing protein
1613	 35.91	0	1578891..1579667	-	258	150403543	-	MmarC7_1628	-	ribosomal RNA methyltransferase RrmJ/FtsJ
1614	 33.71	0	1579690..1581300	-	536	150403544	-	MmarC7_1629	-	hypothetical protein
1615	 38.75	+1	1581337..1582572	-	411	150403545	-	MmarC7_1630	-	putative CoA-substrate-specific enzyme activase
1616	 35.33	0	1582708..1583058	-	116	150403546	-	MmarC7_1631	-	peptidyl-tRNA hydrolase
1617	 34.82	0	1583205..1585154	+	649	150403547	-	MmarC7_1632	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
1618	 32.41	0	1585205..1585747	+	180	150403548	-	MmarC7_1633	-	beta-lactamase domain-containing protein
1619	 27.43	-1	1585749..1586273	-	174	150403549	-	MmarC7_1634	-	2'-5' RNA ligase
1620	 30.61	0	1586282..1586428	-	48	150403550	-	MmarC7_1635	-	hypothetical protein
1621	 32.96	0	1586508..1587308	+	266	150403551	-	MmarC7_1636	-	acetolactate decarboxylase
1622	 39.41	+1	1587405..1587980	+	191	150403552	-	MmarC7_1637	-	NADPH-dependent FMN reductase
1623	 31.71	0	1588194..1589486	-	430	150403553	-	MmarC7_1638	-	tRNA pseudouridine synthase D TruD
1624	 31.76	0	1589613..1590887	+	424	150403554	-	MmarC7_1639	-	hypothetical protein
1625	 31.48	0	1590915..1591562	+	215	150403555	radB	MmarC7_1640	-	DNA repair and recombination protein RadB
1626	 31.82	0	1591671..1592000	+	109	150403556	-	MmarC7_1641	-	hypothetical protein
1627	 35.88	0	1592010..1592402	+	130	150403557	-	MmarC7_1642	-	hypothetical protein
1628	 37.78	+1	1592425..1594020	+	531	150403558	-	MmarC7_1643	-	ABC transporter related
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.