IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1403	 36.70	0	1379380..1381248	-	622	150403333	-	MmarC7_1413	-	threonyl-tRNA synthetase
1404	 34.67	0	1381411..1383054	+	547	150403334	-	MmarC7_1414	-	O-sialoglycoprotein endopeptidase/protein kinase
1405	 35.98	0	1383242..1383958	+	238	150403335	-	MmarC7_1415	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1406	 35.86	0	1383985..1384893	+	302	150403336	-	MmarC7_1416	-	ribokinase-like domain-containing protein
1407	 37.96	+1	1385033..1386544	+	503	150403337	-	MmarC7_1417	-	sodium:neurotransmitter symporter
1408	 31.88	0	1386881..1387846	+	321	150403338	-	MmarC7_1418	-	CBS domain-containing protein
1409	 38.80	+1	1387866..1388780	+	304	150403339	-	MmarC7_1419	-	hypothetical protein
1410	 38.26	+1	1388812..1389258	+	148	150403340	-	MmarC7_1420	-	hypothetical protein
1411	 33.98	0	1389565..1390332	+	255	150403341	-	MmarC7_1421	-	parallel beta-helix repeat-containing protein
1412	 39.10	+1	1390643..1391284	+	213	150403342	-	MmarC7_1422	-	hypothetical protein
1413	 35.09	0	1391294..1391863	+	189	150403343	-	MmarC7_1423	-	nitroreductase
1414	 35.23	0	1391908..1392855	-	315	150403344	rfc	MmarC7_1424	-	replication factor C small subunit
1415	 34.33	0	1392944..1394044	-	366	150403345	-	MmarC7_1425	-	vanadium nitrogenase-associated related protein N
1416	 34.01	0	1394289..1394582	+	97	150403346	-	MmarC7_1426	-	hypothetical protein
1417	 30.90	0	1394638..1395336	+	232	150403347	-	MmarC7_1427	-	ribonuclease P
1418	 36.56	0	1395378..1396679	-	433	150403348	-	MmarC7_1428	-	beta-lactamase domain-containing protein
1419	 33.73	0	1396860..1397621	+	253	150403349	-	MmarC7_1429	-	TatD-related deoxyribonuclease
1420	 28.48	-1	1397640..1398134	+	164	150403350	-	MmarC7_1430	-	putative flavodoxin
1421	 37.35	0	1398173..1398421	-	82	150403351	-	MmarC7_1431	-	hypothetical protein
1422	 30.08	-1	1398679..1399293	+	204	150403352	-	MmarC7_1432	-	hypothetical protein
1423	 34.17	0	1399294..1400244	+	316	150403353	-	MmarC7_1433	-	RimK domain-containing protein ATP-grasp
1424	 31.43	0	1400231..1401334	+	367	150403354	-	MmarC7_1434	-	glutamate--cysteine ligase GCS2
1425	 29.82	-1	1401341..1402138	-	265	150403355	-	MmarC7_1435	-	hypothetical protein
1426	 38.36	+1	1402229..1403143	+	304	150403356	-	MmarC7_1436	-	dihydroorotate dehydrogenase 1B
1427	 37.23	0	1403299..1403862	+	187	150403357	-	MmarC7_1437	-	DNA-directed RNA polymerase subunit E'
1428	 33.90	0	1403900..1404076	+	58	150403358	-	MmarC7_1438	-	DNA-directed RNA polymerase subunit E, RpoE2
1429	 34.80	0	1404108..1404584	+	158	150403359	-	MmarC7_1439	-	hypothetical protein
1430	 33.66	0	1404591..1404899	+	102	150403360	rps24e	MmarC7_1440	-	30S ribosomal protein S24e
1431	 35.29	0	1404901..1405104	+	67	150403361	-	MmarC7_1441	-	30S ribosomal protein S27ae
1432	 31.22	0	1405200..1405436	-	78	150403362	-	MmarC7_1442	-	hypothetical protein
1433	 35.88	0	1405665..1406018	-	117	150403363	-	MmarC7_1443	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1434	 36.84	0	1406049..1406333	-	94	150403364	-	MmarC7_1444	-	hypothetical protein
1435	 33.33	0	1406481..1407329	-	282	150403365	-	MmarC7_1445	-	cobyrinic acid ac-diamide synthase
1436	 32.75	0	1407326..1408183	-	285	150403366	-	MmarC7_1446	-	cobyrinic acid ac-diamide synthase
1437	 34.44	0	1408193..1408552	-	119	150403367	-	MmarC7_1447	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1438	 29.67	-1	1408733..1409005	-	90	150403368	-	MmarC7_1448	-	hypothetical protein
1439	 33.53	0	1409047..1410060	-	337	150403369	-	MmarC7_1449	-	peptidase M50
1440	 27.87	-1	1410171..1410701	-	176	150403370	-	MmarC7_1450	-	hypothetical protein
1441	 33.15	0	1410886..1411434	-	182	150403371	-	MmarC7_1451	-	phage integrase family protein
1442	 36.32	0	1412571..1414211	+	546	150403372	-	MmarC7_1452	-	DEAD/DEAH box helicase domain-containing protein
1443	 31.67	0	1414681..1415283	-	200	150403373	-	MmarC7_1453	-	hypothetical protein
1444	 27.99	-1	1415819..1417090	-	423	150403374	-	MmarC7_1454	-	ATPase
1445	 29.22	-1	1417351..1418640	+	429	150403375	-	MmarC7_1455	-	filamentation induced by cAMP protein Fic
1446	 35.52	0	1420302..1421126	-	274	150403376	-	MmarC7_1457	-	hypothetical protein
1447	 35.47	0	1421402..1421869	-	155	150403377	-	MmarC7_1458	-	hypothetical protein
1448	 38.18	+1	1421885..1422874	-	329	150403378	-	MmarC7_1459	-	membrane protein
1449	 40.38	+1	1422911..1423336	-	141	150403379	-	MmarC7_1460	-	cupin 2 domain-containing protein
1450	 37.21	0	1423400..1423993	-	197	150403380	-	MmarC7_1461	-	TetR family transcriptional regulator
1451	 35.31	0	1424304..1425161	+	285	150403381	-	MmarC7_1462	-	methyltransferase type 11
1452	 39.36	+1	1425461..1426240	+	259	150403382	-	MmarC7_1463	-	cobyrinic acid ac-diamide synthase
1453	 37.94	+1	1426293..1427117	+	274	150403383	-	MmarC7_1464	-	hypothetical protein
1454	 47.72	+2	1427552..1428100	-	182	150403384	-	MmarC7_1466	-	hypothetical protein
1455	 42.75	+2	1428463..1429683	-	406	150403385	-	MmarC7_1467	-	periplasmic binding protein
1456	 44.60	+2	1430021..1430863	-	280	150403386	-	MmarC7_1469	-	methyltransferase type 11
1457	 45.63	+2	1430888..1432147	-	419	150403387	-	MmarC7_1470	-	periplasmic binding protein
1458	 43.93	+2	1432126..1432965	-	279	150403388	-	MmarC7_1471	-	methyltransferase type 11
1459	 44.84	+2	1432981..1433823	-	280	150403389	-	MmarC7_1472	-	ABC transporter related
1460	 42.69	+2	1433830..1434909	-	359	150403390	-	MmarC7_1473	-	transport system permease protein
1461	 34.38	0	1435679..1436155	+	158	150403391	-	MmarC7_1474	-	hypothetical protein
1462	 29.05	-1	1436901..1437227	+	108	150403392	-	MmarC7_1475	-	hypothetical protein
1463	 35.93	0	1437229..1439118	+	629	150403393	-	MmarC7_1476	-	hypothetical protein
1464	 38.68	+1	1439115..1441190	+	691	150403394	-	MmarC7_1477	-	hypothetical protein
1465	 35.90	0	1441229..1441462	+	77	150403395	-	MmarC7_1478	-	hypothetical protein
1466	 38.73	+1	1441479..1441997	+	172	150403396	-	MmarC7_1479	-	hypothetical protein
1467	 35.47	0	1442023..1442349	+	108	150403397	-	MmarC7_1480	-	hypothetical protein
1468	 35.50	0	1442711..1443448	+	245	150403398	-	MmarC7_1481	-	hypothetical protein
1469	 40.78	+1	1443429..1443938	+	169	150403399	-	MmarC7_1482	-	hypothetical protein
1470	 31.29	0	1443944..1444384	+	146	150403400	-	MmarC7_1483	-	hypothetical protein
1471	 32.22	0	1444526..1445065	+	179	150403401	-	MmarC7_1484	-	hypothetical protein
1472	 33.11	0	1445193..1446545	+	450	150403402	-	MmarC7_1485	-	hypothetical protein
1473	 33.47	0	1446555..1447304	+	249	150403403	-	MmarC7_1486	-	hypothetical protein
1474	 34.86	0	1447315..1447839	+	174	150403404	-	MmarC7_1487	-	hypothetical protein
1475	 31.11	0	1447826..1448230	+	134	150403405	-	MmarC7_1488	-	hypothetical protein
1476	 30.16	-1	1448227..1448604	+	125	150403406	-	MmarC7_1489	-	hypothetical protein
1477	 31.52	0	1448904..1449455	+	183	150403407	-	MmarC7_1490	-	resolvase domain-containing protein
1478	 29.84	-1	1449459..1449773	-	104	150403408	-	MmarC7_1491	-	hypothetical protein
1479	 27.41	-1	1449795..1450334	-	179	150403409	-	MmarC7_1492	-	hypothetical protein
1480	 29.25	-1	1451141..1452145	+	334	150403410	-	MmarC7_1494	-	hypothetical protein
1481	 27.23	-1	1452138..1453694	+	518	150403411	-	MmarC7_1495	-	ATPase
1482	 30.09	-1	1453817..1454956	-	379	150403412	-	MmarC7_1496	-	hypothetical protein
1483	 27.19	-1	1455102..1455638	+	178	150403413	-	MmarC7_1497	-	hypothetical protein
1484	 28.67	-1	1455772..1457337	+	521	150403414	-	MmarC7_1498	-	hypothetical protein
1485	 29.87	-1	1457341..1457715	-	124	150403415	-	MmarC7_1499	-	HxlR family transcriptional regulator
1486	 39.81	+1	1458122..1458337	+	71	150403416	-	MmarC7_1500	-	hypothetical protein
1487	 37.06	0	1458366..1458875	+	169	150403417	-	MmarC7_1501	-	hypothetical protein
1488	 34.21	0	1458885..1459112	+	75	150403418	-	MmarC7_1502	-	hypothetical protein
1489	 33.78	0	1459112..1459336	+	74	150403419	-	MmarC7_1503	-	hypothetical protein
1490	 30.82	0	1459557..1459715	+	52	150403420	-	MmarC7_1504	-	hypothetical protein
1491	 28.62	-1	1459717..1460013	+	98	150403421	-	MmarC7_1505	-	hypothetical protein
1492	 33.74	0	1460024..1460269	+	81	150403422	-	MmarC7_1506	-	hypothetical protein
1493	 35.22	0	1460281..1460439	+	52	150403423	-	MmarC7_1507	-	hypothetical protein
1494	 31.48	0	1460483..1461451	+	322	150403424	-	MmarC7_1508	-	phage integrase family protein
1495	 29.76	-1	1461461..1463641	+	726	150403425	-	MmarC7_1509	-	hypothetical protein
1496	 25.53	-2	1464509..1465072	+	187	150403426	-	MmarC7_1510	-	hypothetical protein
1497	 29.59	-1	1465995..1467329	+	444	150403427	-	MmarC7_1511	-	hypothetical protein
1498	 28.59	-1	1467409..1468230	-	273	150403428	-	MmarC7_1512	-	hypothetical protein
1499	 28.52	-1	1468246..1468515	-	89	150403429	-	MmarC7_1513	-	transcriptional regulator PadR family protein
1500	 29.68	-1	1468686..1469096	+	136	150403430	-	MmarC7_1514	-	hypothetical protein
1501	 31.45	0	1469454..1471100	-	548	150403431	-	MmarC7_1515	-	hypothetical protein
1502	 31.90	0	1471394..1472302	+	302	150403432	-	MmarC7_1516	-	aminoglycoside phosphotransferase
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.