IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1374	 35.29	0	1348366..1348569	-	67	150403304	-	MmarC7_1384	-	transcription factor CBF/NF-Y histone
1375	 34.89	0	1348757..1349398	+	213	150403305	-	MmarC7_1385	-	microsomal signal peptidase 21 KD subunit
1376	 36.23	0	1349400..1350572	-	390	150403306	-	MmarC7_1386	-	geranylgeranyl reductase
1377	 30.91	0	1350575..1350739	-	54	150403307	-	MmarC7_1387	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1378	 34.70	0	1350826..1351485	-	219	150403308	-	MmarC7_1388	-	hypothetical protein
1379	 38.21	+1	1351553..1352701	-	382	150403309	-	MmarC7_1389	-	alanine--glyoxylate transaminase
1380	 35.73	0	1352799..1354133	-	444	150403310	-	MmarC7_1390	-	phosphoribosylamine--glycine ligase
1381	 35.85	0	1354324..1354839	-	171	150403311	-	MmarC7_1391	-	phosphodiesterase
1382	 29.66	-1	1354898..1355632	-	244	150403312	-	MmarC7_1392	-	uroporphyrinogen III synthase HEM4
1383	 30.11	-1	1355649..1355927	-	92	150403313	-	MmarC7_1393	-	hypothetical protein
1384	 38.52	+1	1356171..1357463	+	430	150403314	-	MmarC7_1394	-	phosphopyruvate hydratase
1385	 36.62	0	1357654..1360332	+	892	150403315	alaS	MmarC7_1395	-	alanyl-tRNA synthetase
1386	 34.59	0	1360374..1361246	+	290	150403316	-	MmarC7_1396	-	GHMP kinase
1387	 35.78	0	1361257..1362114	+	285	150403317	-	MmarC7_1397	-	peptidase M48 Ste24p
1388	 37.61	0	1362124..1362777	+	217	150403318	-	MmarC7_1398	-	amino acid-binding ACT domain-containing protein
1389	 31.63	0	1362814..1363752	+	312	150403319	-	MmarC7_1399	-	methionine synthase
1390	 30.32	0	1363772..1365130	+	452	150403320	-	MmarC7_1400	-	regulatory protein MarR
1391	 32.23	0	1365417..1366502	+	361	150403321	-	MmarC7_1401	-	glycosyltransferase family 28 protein
1392	 32.37	0	1366516..1367445	+	309	150403322	-	MmarC7_1402	-	LPPG:FO 2-phospho-L-lactate transferase
1393	 36.95	0	1367551..1368351	+	266	150403323	-	MmarC7_1403	-	GTP cyclohydrolase III
1394	 28.50	-1	1368379..1369143	+	254	150403324	-	MmarC7_1404	-	putative TIM-barrel protein
1395	 34.06	0	1369160..1369573	-	137	150403325	-	MmarC7_1405	-	signal transduction protein
1396	 33.12	0	1369732..1370652	+	306	150403326	-	MmarC7_1406	-	H+-transporting two-sector ATPase, A subunit
1397	 33.51	0	1370672..1371832	-	386	150403327	-	MmarC7_1407	-	glucose-methanol-choline oxidoreductase
1398	 37.50	0	1371963..1372826	+	287	150403328	-	MmarC7_1408	-	ribose-phosphate pyrophosphokinase
1399	 35.33	0	1372897..1373397	-	166	150403329	-	MmarC7_1409	-	sulfopyruvate decarboxylase subunit alpha
1400	 33.10	0	1373431..1374708	+	425	150403330	-	MmarC7_1410	-	MiaB-like tRNA modifying enzyme
1401	 30.42	0	1374872..1376968	+	698	150403331	-	MmarC7_1411	-	methyl-accepting chemotaxis sensory transducer
1402	 35.29	0	1377122..1379320	+	732	150403332	-	MmarC7_1412	-	methyl-accepting chemotaxis sensory transducer
1403	 36.70	0	1379380..1381248	-	622	150403333	-	MmarC7_1413	-	threonyl-tRNA synthetase
1404	 34.67	0	1381411..1383054	+	547	150403334	-	MmarC7_1414	-	O-sialoglycoprotein endopeptidase/protein kinase
1405	 35.98	0	1383242..1383958	+	238	150403335	-	MmarC7_1415	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1406	 35.86	0	1383985..1384893	+	302	150403336	-	MmarC7_1416	-	ribokinase-like domain-containing protein
1407	 37.96	+1	1385033..1386544	+	503	150403337	-	MmarC7_1417	-	sodium:neurotransmitter symporter
1408	 31.88	0	1386881..1387846	+	321	150403338	-	MmarC7_1418	-	CBS domain-containing protein
1409	 38.80	+1	1387866..1388780	+	304	150403339	-	MmarC7_1419	-	hypothetical protein
1410	 38.26	+1	1388812..1389258	+	148	150403340	-	MmarC7_1420	-	hypothetical protein
1411	 33.98	0	1389565..1390332	+	255	150403341	-	MmarC7_1421	-	parallel beta-helix repeat-containing protein
1412	 39.10	+1	1390643..1391284	+	213	150403342	-	MmarC7_1422	-	hypothetical protein
1413	 35.09	0	1391294..1391863	+	189	150403343	-	MmarC7_1423	-	nitroreductase
1414	 35.23	0	1391908..1392855	-	315	150403344	rfc	MmarC7_1424	-	replication factor C small subunit
1415	 34.33	0	1392944..1394044	-	366	150403345	-	MmarC7_1425	-	vanadium nitrogenase-associated related protein N
1416	 34.01	0	1394289..1394582	+	97	150403346	-	MmarC7_1426	-	hypothetical protein
1417	 30.90	0	1394638..1395336	+	232	150403347	-	MmarC7_1427	-	ribonuclease P
1418	 36.56	0	1395378..1396679	-	433	150403348	-	MmarC7_1428	-	beta-lactamase domain-containing protein
1419	 33.73	0	1396860..1397621	+	253	150403349	-	MmarC7_1429	-	TatD-related deoxyribonuclease
1420	 28.48	-1	1397640..1398134	+	164	150403350	-	MmarC7_1430	-	putative flavodoxin
1421	 37.35	0	1398173..1398421	-	82	150403351	-	MmarC7_1431	-	hypothetical protein
1422	 30.08	-1	1398679..1399293	+	204	150403352	-	MmarC7_1432	-	hypothetical protein
1423	 34.17	0	1399294..1400244	+	316	150403353	-	MmarC7_1433	-	RimK domain-containing protein ATP-grasp
1424	 31.43	0	1400231..1401334	+	367	150403354	-	MmarC7_1434	-	glutamate--cysteine ligase GCS2
1425	 29.82	-1	1401341..1402138	-	265	150403355	-	MmarC7_1435	-	hypothetical protein
1426	 38.36	+1	1402229..1403143	+	304	150403356	-	MmarC7_1436	-	dihydroorotate dehydrogenase 1B
1427	 37.23	0	1403299..1403862	+	187	150403357	-	MmarC7_1437	-	DNA-directed RNA polymerase subunit E'
1428	 33.90	0	1403900..1404076	+	58	150403358	-	MmarC7_1438	-	DNA-directed RNA polymerase subunit E, RpoE2
1429	 34.80	0	1404108..1404584	+	158	150403359	-	MmarC7_1439	-	hypothetical protein
1430	 33.66	0	1404591..1404899	+	102	150403360	rps24e	MmarC7_1440	-	30S ribosomal protein S24e
1431	 35.29	0	1404901..1405104	+	67	150403361	-	MmarC7_1441	-	30S ribosomal protein S27ae
1432	 31.22	0	1405200..1405436	-	78	150403362	-	MmarC7_1442	-	hypothetical protein
1433	 35.88	0	1405665..1406018	-	117	150403363	-	MmarC7_1443	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1434	 36.84	0	1406049..1406333	-	94	150403364	-	MmarC7_1444	-	hypothetical protein
1435	 33.33	0	1406481..1407329	-	282	150403365	-	MmarC7_1445	-	cobyrinic acid ac-diamide synthase
1436	 32.75	0	1407326..1408183	-	285	150403366	-	MmarC7_1446	-	cobyrinic acid ac-diamide synthase
1437	 34.44	0	1408193..1408552	-	119	150403367	-	MmarC7_1447	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1438	 29.67	-1	1408733..1409005	-	90	150403368	-	MmarC7_1448	-	hypothetical protein
1439	 33.53	0	1409047..1410060	-	337	150403369	-	MmarC7_1449	-	peptidase M50
1440	 27.87	-1	1410171..1410701	-	176	150403370	-	MmarC7_1450	-	hypothetical protein
1441	 33.15	0	1410886..1411434	-	182	150403371	-	MmarC7_1451	-	phage integrase family protein
1442	 36.32	0	1412571..1414211	+	546	150403372	-	MmarC7_1452	-	DEAD/DEAH box helicase domain-containing protein
1443	 31.67	0	1414681..1415283	-	200	150403373	-	MmarC7_1453	-	hypothetical protein
1444	 27.99	-1	1415819..1417090	-	423	150403374	-	MmarC7_1454	-	ATPase
1445	 29.22	-1	1417351..1418640	+	429	150403375	-	MmarC7_1455	-	filamentation induced by cAMP protein Fic
1446	 35.52	0	1420302..1421126	-	274	150403376	-	MmarC7_1457	-	hypothetical protein
1447	 35.47	0	1421402..1421869	-	155	150403377	-	MmarC7_1458	-	hypothetical protein
1448	 38.18	+1	1421885..1422874	-	329	150403378	-	MmarC7_1459	-	membrane protein
1449	 40.38	+1	1422911..1423336	-	141	150403379	-	MmarC7_1460	-	cupin 2 domain-containing protein
1450	 37.21	0	1423400..1423993	-	197	150403380	-	MmarC7_1461	-	TetR family transcriptional regulator
1451	 35.31	0	1424304..1425161	+	285	150403381	-	MmarC7_1462	-	methyltransferase type 11
1452	 39.36	+1	1425461..1426240	+	259	150403382	-	MmarC7_1463	-	cobyrinic acid ac-diamide synthase
1453	 37.94	+1	1426293..1427117	+	274	150403383	-	MmarC7_1464	-	hypothetical protein
1454	 47.72	+2	1427552..1428100	-	182	150403384	-	MmarC7_1466	-	hypothetical protein
1455	 42.75	+2	1428463..1429683	-	406	150403385	-	MmarC7_1467	-	periplasmic binding protein
1456	 44.60	+2	1430021..1430863	-	280	150403386	-	MmarC7_1469	-	methyltransferase type 11
1457	 45.63	+2	1430888..1432147	-	419	150403387	-	MmarC7_1470	-	periplasmic binding protein
1458	 43.93	+2	1432126..1432965	-	279	150403388	-	MmarC7_1471	-	methyltransferase type 11
1459	 44.84	+2	1432981..1433823	-	280	150403389	-	MmarC7_1472	-	ABC transporter related
1460	 42.69	+2	1433830..1434909	-	359	150403390	-	MmarC7_1473	-	transport system permease protein
1461	 34.38	0	1435679..1436155	+	158	150403391	-	MmarC7_1474	-	hypothetical protein
1462	 29.05	-1	1436901..1437227	+	108	150403392	-	MmarC7_1475	-	hypothetical protein
1463	 35.93	0	1437229..1439118	+	629	150403393	-	MmarC7_1476	-	hypothetical protein
1464	 38.68	+1	1439115..1441190	+	691	150403394	-	MmarC7_1477	-	hypothetical protein
1465	 35.90	0	1441229..1441462	+	77	150403395	-	MmarC7_1478	-	hypothetical protein
1466	 38.73	+1	1441479..1441997	+	172	150403396	-	MmarC7_1479	-	hypothetical protein
1467	 35.47	0	1442023..1442349	+	108	150403397	-	MmarC7_1480	-	hypothetical protein
1468	 35.50	0	1442711..1443448	+	245	150403398	-	MmarC7_1481	-	hypothetical protein
1469	 40.78	+1	1443429..1443938	+	169	150403399	-	MmarC7_1482	-	hypothetical protein
1470	 31.29	0	1443944..1444384	+	146	150403400	-	MmarC7_1483	-	hypothetical protein
1471	 32.22	0	1444526..1445065	+	179	150403401	-	MmarC7_1484	-	hypothetical protein
1472	 33.11	0	1445193..1446545	+	450	150403402	-	MmarC7_1485	-	hypothetical protein
1473	 33.47	0	1446555..1447304	+	249	150403403	-	MmarC7_1486	-	hypothetical protein
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.