IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1331	 36.08	0	1300869..1302578	+	569	150403261	-	MmarC7_1341	-	pyruvate carboxylase subunit B
1332	 37.78	+1	1302624..1304108	+	494	150403262	-	MmarC7_1342	-	pyruvate carboxylase subunit A
1333	 30.77	0	1304422..1304850	+	142	150403263	-	MmarC7_1343	-	putative flagellar protein FlaF
1334	 32.29	0	1304851..1305522	-	223	150403264	-	MmarC7_1344	-	putative ATP binding protein
1335	 34.47	0	1305575..1306456	-	293	150403265	-	MmarC7_1345	-	hypothetical protein
1336	 33.96	0	1306591..1307712	-	373	150403266	-	MmarC7_1346	-	2-hydroxyglutaryl-CoA dehydratase D-component
1337	 28.72	-1	1307980..1308261	-	93	150403267	-	MmarC7_1347	-	hypothetical protein
1338	 35.19	0	1308351..1308944	-	197	150403268	-	MmarC7_1348	-	GPR1/FUN34/yaaH family protein
1339	 33.33	0	1309077..1309805	-	242	150403269	-	MmarC7_1349	-	putative CoA-substrate-specific enzyme activase
1340	 30.02	-1	1309839..1311164	-	441	150403270	-	MmarC7_1350	-	UDP-glucose 6-dehydrogenase
1341	 21.38	-2	1311161..1311712	-	183	150403271	-	MmarC7_1351	-	hypothetical protein
1342	 26.65	-1	1311709..1313010	-	433	150403272	-	MmarC7_1352	-	hypothetical protein
1343	 31.72	0	1313024..1313953	-	309	150403273	-	MmarC7_1353	-	ATPase
1344	 25.73	-2	1313928..1314926	-	332	150403274	-	MmarC7_1354	-	hypothetical protein
1345	 25.08	-2	1314926..1316779	-	617	150403275	-	MmarC7_1355	-	hypothetical protein
1346	 28.04	-1	1316798..1317553	+	251	150403276	-	MmarC7_1356	-	hypothetical protein
1347	 28.33	-1	1317566..1317805	+	79	150403277	-	MmarC7_1357	-	hypothetical protein
1348	 30.40	0	1317815..1318360	+	181	150403278	-	MmarC7_1358	-	hypothetical protein
1349	 37.27	0	1318445..1320451	+	668	150403279	-	MmarC7_1359	-	hypothetical protein
1350	 31.91	0	1320489..1321892	+	467	150403280	-	MmarC7_1360	-	hypothetical protein
1351	 25.12	-2	1321983..1323224	+	413	150403281	-	MmarC7_1361	-	polysaccharide biosynthesis protein
1352	 27.45	-1	1323256..1324428	-	390	150403282	-	MmarC7_1362	-	hypothetical protein
1353	 27.82	-1	1324559..1326790	-	743	150403283	-	MmarC7_1363	-	hypothetical protein
1354	 27.32	-1	1327441..1328487	+	348	150403284	-	MmarC7_1364	-	glycosyl transferase family protein
1355	 29.56	-1	1328664..1329908	-	414	150403285	-	MmarC7_1365	-	glycosyl transferase group 1
1356	 31.15	0	1329929..1330615	-	228	150403286	-	MmarC7_1366	-	glycosyl transferase family protein
1357	 31.99	0	1330719..1331390	+	223	150403287	-	MmarC7_1367	-	hypothetical protein
1358	 39.21	+1	1331472..1332305	-	277	150403288	-	MmarC7_1368	-	F420-dependent methylenetetrahydromethanopterin dehydrogenase
1359	 29.72	-1	1332509..1332757	+	82	150403289	-	MmarC7_1369	-	hypothetical protein
1360	 31.83	0	1332789..1333319	-	176	150403290	-	MmarC7_1370	-	hypothetical protein
1361	 33.55	0	1333404..1334777	+	457	150403291	-	MmarC7_1371	-	radical SAM domain-containing protein
1362	 29.91	-1	1335013..1335246	-	77	150403292	-	MmarC7_1372	-	hypothetical protein
1363	 32.52	0	1335285..1335530	-	81	150403293	-	MmarC7_1373	-	hypothetical protein
1364	 29.87	-1	1335958..1337142	-	394	150403294	-	MmarC7_1374	-	ATP dependent DNA ligase
1365	 36.43	0	1337148..1337792	-	214	150403295	-	MmarC7_1375	-	phosphotransferase domain-containing protein
1366	 31.62	0	1337823..1339106	-	427	150403296	-	MmarC7_1376	-	amidohydrolase
1367	 27.47	-1	1339112..1339435	-	107	150403297	-	MmarC7_1377	-	hypothetical protein
1368	 31.46	0	1339440..1341782	-	780	150403298	-	MmarC7_1378	-	DNA polymerase Pol2
1369	 35.80	0	1341951..1342436	+	161	150403299	-	MmarC7_1379	-	3-isopropylmalate dehydratase, small subunit
1370	 36.72	0	1342475..1344247	+	590	150403300	-	MmarC7_1380	-	putative ATPase RIL
1371	 40.20	+1	1344690..1346378	+	562	150403301	-	MmarC7_1381	-	S-layer protein
1372	 31.69	0	1347005..1347187	-	60	150403302	-	MmarC7_1382	-	hypothetical protein
1373	 35.25	0	1347443..1348120	-	225	150403303	-	MmarC7_1383	-	uridylate kinase, putative
1374	 35.29	0	1348366..1348569	-	67	150403304	-	MmarC7_1384	-	transcription factor CBF/NF-Y histone
1375	 34.89	0	1348757..1349398	+	213	150403305	-	MmarC7_1385	-	microsomal signal peptidase 21 KD subunit
1376	 36.23	0	1349400..1350572	-	390	150403306	-	MmarC7_1386	-	geranylgeranyl reductase
1377	 30.91	0	1350575..1350739	-	54	150403307	-	MmarC7_1387	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1378	 34.70	0	1350826..1351485	-	219	150403308	-	MmarC7_1388	-	hypothetical protein
1379	 38.21	+1	1351553..1352701	-	382	150403309	-	MmarC7_1389	-	alanine--glyoxylate transaminase
1380	 35.73	0	1352799..1354133	-	444	150403310	-	MmarC7_1390	-	phosphoribosylamine--glycine ligase
1381	 35.85	0	1354324..1354839	-	171	150403311	-	MmarC7_1391	-	phosphodiesterase
1382	 29.66	-1	1354898..1355632	-	244	150403312	-	MmarC7_1392	-	uroporphyrinogen III synthase HEM4
1383	 30.11	-1	1355649..1355927	-	92	150403313	-	MmarC7_1393	-	hypothetical protein
1384	 38.52	+1	1356171..1357463	+	430	150403314	-	MmarC7_1394	-	phosphopyruvate hydratase
1385	 36.62	0	1357654..1360332	+	892	150403315	alaS	MmarC7_1395	-	alanyl-tRNA synthetase
1386	 34.59	0	1360374..1361246	+	290	150403316	-	MmarC7_1396	-	GHMP kinase
1387	 35.78	0	1361257..1362114	+	285	150403317	-	MmarC7_1397	-	peptidase M48 Ste24p
1388	 37.61	0	1362124..1362777	+	217	150403318	-	MmarC7_1398	-	amino acid-binding ACT domain-containing protein
1389	 31.63	0	1362814..1363752	+	312	150403319	-	MmarC7_1399	-	methionine synthase
1390	 30.32	0	1363772..1365130	+	452	150403320	-	MmarC7_1400	-	regulatory protein MarR
1391	 32.23	0	1365417..1366502	+	361	150403321	-	MmarC7_1401	-	glycosyltransferase family 28 protein
1392	 32.37	0	1366516..1367445	+	309	150403322	-	MmarC7_1402	-	LPPG:FO 2-phospho-L-lactate transferase
1393	 36.95	0	1367551..1368351	+	266	150403323	-	MmarC7_1403	-	GTP cyclohydrolase III
1394	 28.50	-1	1368379..1369143	+	254	150403324	-	MmarC7_1404	-	putative TIM-barrel protein
1395	 34.06	0	1369160..1369573	-	137	150403325	-	MmarC7_1405	-	signal transduction protein
1396	 33.12	0	1369732..1370652	+	306	150403326	-	MmarC7_1406	-	H+-transporting two-sector ATPase, A subunit
1397	 33.51	0	1370672..1371832	-	386	150403327	-	MmarC7_1407	-	glucose-methanol-choline oxidoreductase
1398	 37.50	0	1371963..1372826	+	287	150403328	-	MmarC7_1408	-	ribose-phosphate pyrophosphokinase
1399	 35.33	0	1372897..1373397	-	166	150403329	-	MmarC7_1409	-	sulfopyruvate decarboxylase subunit alpha
1400	 33.10	0	1373431..1374708	+	425	150403330	-	MmarC7_1410	-	MiaB-like tRNA modifying enzyme
1401	 30.42	0	1374872..1376968	+	698	150403331	-	MmarC7_1411	-	methyl-accepting chemotaxis sensory transducer
1402	 35.29	0	1377122..1379320	+	732	150403332	-	MmarC7_1412	-	methyl-accepting chemotaxis sensory transducer
1403	 36.70	0	1379380..1381248	-	622	150403333	-	MmarC7_1413	-	threonyl-tRNA synthetase
1404	 34.67	0	1381411..1383054	+	547	150403334	-	MmarC7_1414	-	O-sialoglycoprotein endopeptidase/protein kinase
1405	 35.98	0	1383242..1383958	+	238	150403335	-	MmarC7_1415	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1406	 35.86	0	1383985..1384893	+	302	150403336	-	MmarC7_1416	-	ribokinase-like domain-containing protein
1407	 37.96	+1	1385033..1386544	+	503	150403337	-	MmarC7_1417	-	sodium:neurotransmitter symporter
1408	 31.88	0	1386881..1387846	+	321	150403338	-	MmarC7_1418	-	CBS domain-containing protein
1409	 38.80	+1	1387866..1388780	+	304	150403339	-	MmarC7_1419	-	hypothetical protein
1410	 38.26	+1	1388812..1389258	+	148	150403340	-	MmarC7_1420	-	hypothetical protein
1411	 33.98	0	1389565..1390332	+	255	150403341	-	MmarC7_1421	-	parallel beta-helix repeat-containing protein
1412	 39.10	+1	1390643..1391284	+	213	150403342	-	MmarC7_1422	-	hypothetical protein
1413	 35.09	0	1391294..1391863	+	189	150403343	-	MmarC7_1423	-	nitroreductase
1414	 35.23	0	1391908..1392855	-	315	150403344	rfc	MmarC7_1424	-	replication factor C small subunit
1415	 34.33	0	1392944..1394044	-	366	150403345	-	MmarC7_1425	-	vanadium nitrogenase-associated related protein N
1416	 34.01	0	1394289..1394582	+	97	150403346	-	MmarC7_1426	-	hypothetical protein
1417	 30.90	0	1394638..1395336	+	232	150403347	-	MmarC7_1427	-	ribonuclease P
1418	 36.56	0	1395378..1396679	-	433	150403348	-	MmarC7_1428	-	beta-lactamase domain-containing protein
1419	 33.73	0	1396860..1397621	+	253	150403349	-	MmarC7_1429	-	TatD-related deoxyribonuclease
1420	 28.48	-1	1397640..1398134	+	164	150403350	-	MmarC7_1430	-	putative flavodoxin
1421	 37.35	0	1398173..1398421	-	82	150403351	-	MmarC7_1431	-	hypothetical protein
1422	 30.08	-1	1398679..1399293	+	204	150403352	-	MmarC7_1432	-	hypothetical protein
1423	 34.17	0	1399294..1400244	+	316	150403353	-	MmarC7_1433	-	RimK domain-containing protein ATP-grasp
1424	 31.43	0	1400231..1401334	+	367	150403354	-	MmarC7_1434	-	glutamate--cysteine ligase GCS2
1425	 29.82	-1	1401341..1402138	-	265	150403355	-	MmarC7_1435	-	hypothetical protein
1426	 38.36	+1	1402229..1403143	+	304	150403356	-	MmarC7_1436	-	dihydroorotate dehydrogenase 1B
1427	 37.23	0	1403299..1403862	+	187	150403357	-	MmarC7_1437	-	DNA-directed RNA polymerase subunit E'
1428	 33.90	0	1403900..1404076	+	58	150403358	-	MmarC7_1438	-	DNA-directed RNA polymerase subunit E, RpoE2
1429	 34.80	0	1404108..1404584	+	158	150403359	-	MmarC7_1439	-	hypothetical protein
1430	 33.66	0	1404591..1404899	+	102	150403360	rps24e	MmarC7_1440	-	30S ribosomal protein S24e
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.