IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1188	 35.86	0	1166589..1167260	-	223	150403118	-	MmarC7_1197	-	methyltransferase type 12
1189	 34.44	0	1175789..1176508	+	239	150403119	-	MmarC7_1199	-	hypothetical protein
1190	 36.92	0	1176508..1177149	+	213	150403120	-	MmarC7_1200	-	MotA/TolQ/ExbB proton channel
1191	 35.10	0	1177143..1177481	+	112	150403121	-	MmarC7_1201	-	hypothetical protein
1192	 35.77	0	1177639..1178460	+	273	150403122	-	MmarC7_1202	-	hypothetical protein
1193	 31.86	0	1179274..1179681	+	135	150403123	-	MmarC7_1203	-	protein tyrosine phosphatase
1194	 35.42	0	1179693..1180649	+	318	150403124	-	MmarC7_1204	-	permease
1195	 30.77	0	1180682..1180915	+	77	150403125	-	MmarC7_1205	-	redox-active disulfide protein 2
1196	 37.66	0	1180985..1181515	+	176	150403126	-	MmarC7_1206	-	flavoprotein
1197	 35.46	0	1182037..1182834	+	265	150403127	-	MmarC7_1207	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1198	 33.48	0	1182844..1183509	+	221	150403128	-	MmarC7_1208	-	molybdate ABC transporter, inner membrane subunit
1199	 31.58	0	1183519..1184661	+	380	150403129	-	MmarC7_1209	-	ABC transporter related
1200	 32.85	0	1184708..1185937	+	409	150403130	-	MmarC7_1210	-	aldo/keto reductase
1201	 32.67	0	1185953..1186555	-	200	150403131	-	MmarC7_1211	-	helix-turn-helix domain-containing protein
1202	 30.89	0	1186644..1187543	+	299	150403132	-	MmarC7_1212	-	hypothetical protein
1203	 27.06	-1	1187622..1188290	+	222	150403133	-	MmarC7_1213	-	hypothetical protein
1204	 34.96	0	1188292..1190016	-	574	150403134	-	MmarC7_1214	-	glycyl-tRNA synthetase
1205	 31.63	0	1190028..1190909	-	293	150403135	-	MmarC7_1215	-	triphosphoribosyl-dephospho-CoA protein
1206	 31.35	0	1190918..1191472	-	184	150403136	-	MmarC7_1216	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1207	 29.68	-1	1191585..1191995	+	136	150403137	-	MmarC7_1217	-	hypothetical protein
1208	 30.49	0	1192134..1192871	+	245	150403138	-	MmarC7_1218	-	hypothetical protein
1209	 34.64	0	1193243..1194163	+	306	150403139	-	MmarC7_1219	-	putative manganese-dependent inorganic pyrophosphatase
1210	 37.69	0	1194322..1195791	+	489	150403140	-	MmarC7_1220	-	SSS family solute/sodium (Na+) symporter
1211	 39.22	+1	1195987..1197465	+	492	150403141	-	MmarC7_1221	-	sodium/proline symporter
1212	 28.75	-1	1197533..1197772	+	79	150403142	-	MmarC7_1222	-	hypothetical protein
1213	 33.33	0	1197782..1198057	+	91	150403143	-	MmarC7_1223	-	hypothetical protein
1214	 35.36	0	1198067..1199350	+	427	150403144	-	MmarC7_1224	-	glutamate-1-semialdehyde aminotransferase
1215	 33.93	0	1199398..1200402	-	334	150403145	-	MmarC7_1225	-	3-dehydroquinate synthase
1216	 33.33	0	1200410..1201111	-	233	150403146	-	MmarC7_1226	-	exsB protein
1217	 35.98	0	1201237..1203612	-	791	150403147	-	MmarC7_1227	-	anaerobic ribonucleoside-triphosphate reductase
1218	 33.78	0	1203783..1204904	+	373	150403148	-	MmarC7_1228	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1219	 36.48	0	1204921..1205652	-	243	150403149	-	MmarC7_1229	-	ABC transporter related
1220	 34.80	0	1205636..1206316	-	226	150403150	-	MmarC7_1230	-	polar amino acid ABC transporter, inner membrane subunit
1221	 37.55	0	1206403..1207185	-	260	150403151	-	MmarC7_1231	-	extracellular solute-binding protein
1222	 35.52	0	1207301..1207987	-	228	150403152	-	MmarC7_1232	-	metal dependent phosphohydrolase
1223	 33.60	0	1208069..1208437	+	122	150403153	-	MmarC7_1233	-	hypothetical protein
1224	 30.26	0	1208452..1209492	+	346	150403154	-	MmarC7_1234	-	peptidase A24A prepilin type IV
1225	 33.33	0	1209494..1209889	+	131	150403155	-	MmarC7_1235	-	hypothetical protein
1226	 35.34	0	1210021..1211169	+	382	150403156	-	MmarC7_1236	-	hypothetical protein
1227	 35.26	0	1211169..1212050	+	293	150403157	-	MmarC7_1237	-	hypothetical protein
1228	 33.58	0	1212083..1212481	+	132	150403158	-	MmarC7_1238	-	hypothetical protein
1229	 29.36	-1	1212459..1212911	+	150	150403159	-	MmarC7_1239	-	hypothetical protein
1230	 26.04	-2	1213002..1213508	+	168	150403160	-	MmarC7_1240	-	hypothetical protein
1231	 29.33	-1	1213513..1214361	+	282	150403161	-	MmarC7_1241	-	hypothetical protein
1232	 35.02	0	1214372..1214905	+	177	150403162	-	MmarC7_1242	-	hypothetical protein
1233	 33.00	0	1214908..1216689	+	593	150403163	-	MmarC7_1243	-	hypothetical protein
1234	 25.56	-2	1216690..1216959	-	89	150403164	-	MmarC7_1244	-	hypothetical protein
1235	 29.87	-1	1216971..1217345	-	124	150403165	-	MmarC7_1245	-	hypothetical protein
1236	 32.84	0	1217347..1218354	-	335	150403166	-	MmarC7_1246	-	phosphoesterase domain-containing protein
1237	 35.38	0	1218394..1218735	-	113	150403167	-	MmarC7_1247	-	prefoldin, beta subunit
1238	 30.56	0	1218794..1219045	-	83	150403168	-	MmarC7_1248	-	hypothetical protein
1239	 30.10	-1	1219053..1219547	-	164	150403169	-	MmarC7_1249	-	ribosomal biogenesis protein
1240	 32.62	0	1219547..1219687	-	46	150403170	-	MmarC7_1250	-	RNA polymerase Rbp10
1241	 35.74	0	1219742..1220032	-	96	150403171	rpl37ae	MmarC7_1251	-	50S ribosomal protein L37Ae
1242	 37.59	0	1220062..1220766	-	234	150403172	-	MmarC7_1252	-	putative RNA-associated protein
1243	 38.21	+1	1220865..1221644	-	259	150403173	-	MmarC7_1253	-	proteasome subunit alpha
1244	 33.33	0	1221817..1221921	+	34	150403174	-	MmarC7_1254	-	hypothetical protein
1245	 40.40	+1	1222015..1222113	+	32	150403175	-	MmarC7_1255	-	hypothetical protein
1246	 35.98	0	1222159..1224270	-	703	150403176	-	MmarC7_1256	-	CoA-binding domain-containing protein
1247	 30.10	-1	1224413..1225927	+	504	150403177	-	MmarC7_1257	-	carbohydrate kinase, YjeF related protein
1248	 35.11	0	1225952..1226851	+	299	150403178	-	MmarC7_1258	-	phosphotransferase domain-containing protein
1249	 34.15	0	1226880..1227491	-	203	150403179	hisH	MmarC7_1259	-	imidazole glycerol phosphate synthase subunit HisH
1250	 36.45	0	1227503..1228048	-	181	150403180	-	MmarC7_1260	-	transcription factor
1251	 44.67	+2	1228181..1228480	-	99	150403181	rpl12p	MmarC7_1261	-	50S ribosomal protein L12P
1252	 39.29	+1	1228565..1229572	-	335	150403182	rplP0	MmarC7_1262	-	acidic ribosomal protein P0
1253	 40.65	+1	1229586..1230227	-	213	150403183	rpl1P	MmarC7_1263	-	50S ribosomal protein L1P
1254	 32.65	0	1230403..1230693	-	96	150403184	-	MmarC7_1264	-	RNA polymerase dimerisation
1255	 28.96	-1	1230690..1231307	-	205	150403185	-	MmarC7_1265	-	hypothetical protein
1256	 35.81	0	1232321..1233250	+	309	150403186	-	MmarC7_1266	-	tyrosyl-tRNA synthetase
1257	 32.95	0	1233268..1234323	+	351	150403187	-	MmarC7_1267	-	MscS mechanosensitive ion channel
1258	 32.66	0	1234357..1234800	+	147	150403188	-	MmarC7_1268	-	hypothetical protein
1259	 32.85	0	1235062..1235688	+	208	150403189	-	MmarC7_1269	-	high-affinity nickel-transporter
1260	 35.36	0	1235762..1236403	-	213	150403190	-	MmarC7_1270	-	multiple antibiotic resistance (MarC)-related protein
1261	 36.68	0	1236434..1237150	-	238	150403191	-	MmarC7_1271	-	hypothetical protein
1262	 35.87	0	1237163..1237951	-	262	150403192	truA	MmarC7_1272	-	tRNA pseudouridine synthase A
1263	 31.03	0	1238201..1239418	+	405	150403193	-	MmarC7_1273	-	hypothetical protein
1264	 35.91	0	1239431..1240090	-	219	150403194	-	MmarC7_1274	-	Fe-S cluster domain-containing protein
1265	 38.20	+1	1240092..1240790	-	232	150403195	-	MmarC7_1275	-	cobalamin synthesis protein P47K
1266	 36.99	0	1240816..1241607	-	263	150403196	-	MmarC7_1276	-	ABC transporter related
1267	 33.33	0	1241626..1242381	-	251	150403197	-	MmarC7_1277	-	phosphosulfolactate synthase
1268	 38.51	+1	1242593..1243597	+	334	150403198	-	MmarC7_1278	-	hydrogenase expression/formation protein HypE
1269	 32.14	0	1243838..1246516	+	892	150403199	-	MmarC7_1279	-	periplasmic copper-binding
1270	 34.56	0	1246563..1247705	-	380	150403200	-	MmarC7_1280	-	TraB family protein
1271	 35.06	0	1247781..1248242	+	153	150403201	-	MmarC7_1281	-	signal transduction protein
1272	 34.87	0	1248255..1249232	+	325	150403202	-	MmarC7_1282	-	beta-ribofuranosylaminobenzene 5'-phosphate synthase
1273	 32.56	0	1249251..1249640	+	129	150403203	-	MmarC7_1283	-	phosphoribosyl-AMP cyclohydrolase
1274	 35.66	0	1249701..1251593	+	630	150403204	-	MmarC7_1284	-	ATPase
1275	 35.01	0	1251595..1252071	-	158	150403205	-	MmarC7_1285	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1276	 38.57	+1	1252263..1252682	+	139	150403206	-	MmarC7_1286	-	nucleoside-diphosphate kinase
1277	 35.89	0	1252842..1254638	+	598	150403207	-	MmarC7_1287	-	translation initiation factor IF-2
1278	 34.50	0	1254773..1256233	+	486	150403208	-	MmarC7_1288	-	TrkA domain-containing protein
1279	 31.17	0	1256246..1256476	+	76	150403209	-	MmarC7_1289	-	hypothetical protein
1280	 34.09	0	1256482..1257276	+	264	150403210	-	MmarC7_1290	-	CBS domain-containing protein
1281	 26.29	-2	1257316..1258053	+	245	150403211	-	MmarC7_1291	-	hypothetical protein
1282	 37.49	0	1258075..1259157	-	360	150403212	-	MmarC7_1292	-	hydrogenase expression/formation protein HypD
1283	 34.91	0	1259408..1259788	+	126	150403213	nac	MmarC7_1293	-	nascent polypeptide-associated complex protein
1284	 37.28	0	1259851..1261194	+	447	150403214	-	MmarC7_1294	-	AIR synthase-like protein
1285	 26.34	-2	1261191..1261376	-	61	150403215	-	MmarC7_1295	-	hypothetical protein
1286	 34.63	0	1261388..1262314	-	308	150403216	-	MmarC7_1296	-	aldolase
1287	 36.95	0	1262473..1263441	+	322	150403217	-	MmarC7_1297	-	Pyrrolo-quinoline quinone
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.