IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1132	 32.77	0	1107273..1109582	-	769	150403062	-	MmarC7_1139	-	(NiFe) hydrogenase maturation protein HypF
1133	 33.79	0	1109627..1110499	-	290	150403063	-	MmarC7_1140	-	DNA topoisomerase type IA Zn finger domain-containing protein
1134	 32.80	0	1110529..1112034	-	501	150403064	-	MmarC7_1141	-	thiamine pyrophosphate binding domain-containing protein
1135	 28.42	-1	1112061..1112447	-	128	150403065	-	MmarC7_1142	-	hypothetical protein
1136	 31.65	0	1112492..1113619	-	375	150403066	-	MmarC7_1143	-	hypothetical protein
1137	 32.18	0	1113634..1114242	-	202	150403067	-	MmarC7_1144	-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase
1138	 36.74	0	1114257..1114814	-	185	150403068	-	MmarC7_1145	-	adenine phosphoribosyltransferase
1139	 34.83	0	1114839..1116245	-	468	150403069	-	MmarC7_1146	-	hypothetical protein
1140	 37.09	0	1116261..1117139	-	292	150403070	-	MmarC7_1147	-	nitrogenase reductase-like protein
1141	 39.56	+1	1117435..1119345	+	636	150403071	-	MmarC7_1148	-	acetate--CoA ligase
1142	 32.10	0	1119367..1120419	-	350	150403072	-	MmarC7_1149	-	putative RNA methylase
1143	 35.47	0	1120489..1121004	+	171	150403073	-	MmarC7_1150	-	hypothetical protein
1144	 31.94	0	1121009..1121152	+	47	150403074	rpl40e	MmarC7_1151	-	50S ribosomal protein L40e
1145	 38.63	+1	1121532..1122872	+	446	150403075	-	MmarC7_1152	-	citrate transporter
1146	 36.61	0	1123308..1124468	-	386	150403076	aksA	MmarC7_1153	-	trans-homoaconitate synthase
1147	 33.00	0	1124520..1126025	-	501	150403077	-	MmarC7_1154	-	hypothetical protein
1148	 32.55	0	1126264..1126647	+	127	150403078	-	MmarC7_1155	-	hypothetical protein
1149	 40.14	+1	1126887..1127312	+	141	150403079	-	MmarC7_1156	-	30S ribosomal protein S19e
1150	 40.28	+1	1127337..1127696	+	119	150403080	-	MmarC7_1157	-	hypothetical protein
1151	 35.54	0	1127706..1128293	+	195	150403081	-	MmarC7_1158	-	hypothetical protein
1152	 35.26	0	1128310..1128465	+	51	150403082	rpl39e	MmarC7_1159	-	50S ribosomal protein L39e
1153	 37.40	0	1128518..1129819	-	433	150403083	-	MmarC7_1160	-	phenylacetate--CoA ligase
1154	 31.59	0	1129963..1130709	-	248	150403084	-	MmarC7_1161	-	2-phosphosulfolactate phosphatase
1155	 31.01	0	1130728..1131372	+	214	150403085	-	MmarC7_1162	-	hypothetical protein
1156	 37.09	0	1131433..1132470	+	345	150403086	-	MmarC7_1163	-	arsenite-activated ATPase ArsA
1157	 39.23	+1	1132518..1132958	-	146	150403087	-	MmarC7_1164	-	sirohydrochlorin cobaltochelatase
1158	 38.32	+1	1133049..1133810	-	253	150403088	-	MmarC7_1165	-	daunorubicin resistance ABC transporter, inner membrane subunit B
1159	 36.88	0	1133820..1135202	-	460	150403089	-	MmarC7_1166	-	MATE efflux family protein
1160	 33.85	0	1135203..1136177	-	324	150403090	-	MmarC7_1167	-	daunorubicin resistance ABC transporter ATPase subunit
1161	 32.24	0	1136179..1136637	-	152	150403091	-	MmarC7_1168	-	PadR-like family transcriptional regulator
1162	 32.27	0	1136750..1137877	+	375	150403092	-	MmarC7_1169	-	peptidase M50
1163	 35.55	0	1137898..1138755	+	285	150403093	-	MmarC7_1170	-	alpha-L-glutamate ligase
1164	 34.19	0	1138802..1139503	+	233	150403094	-	MmarC7_1171	-	hypothetical protein
1165	 31.62	0	1139531..1139821	-	96	150403095	-	MmarC7_1172	-	hypothetical protein
1166	 27.85	-1	1139876..1141078	+	400	150403096	-	MmarC7_1173	-	Mur ligase middle domain-containing protein
1167	 35.15	0	1141075..1142451	-	458	150403097	-	MmarC7_1174	-	metal dependent phosphohydrolase
1168	 27.89	-1	1142594..1143052	+	152	150403098	-	MmarC7_1175	-	hypothetical protein
1169	 37.99	+1	1143090..1145492	-	800	150403099	-	MmarC7_1176	-	AAA family ATPase, CDC48 subfamily protein
1170	 35.28	0	1145608..1145967	-	119	150403100	-	MmarC7_1177	-	hypothetical protein
1171	 36.26	0	1146102..1146920	-	272	150403101	-	MmarC7_1178	-	phosphoribosylformylglycinamidine synthase I
1172	 36.46	0	1146921..1149890	-	989	150403102	-	MmarC7_1179	-	phosphoribosylformylglycinamidine synthase
1173	 39.92	+1	1150066..1150536	-	156	150403103	-	MmarC7_1180	-	riboflavin synthase
1174	 29.58	-1	1150681..1150893	-	70	150403104	-	MmarC7_1181	-	hypothetical protein
1175	 36.29	0	1151064..1151807	-	247	150403105	-	MmarC7_1182	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1176	 30.99	0	1151928..1152311	-	127	150403106	-	MmarC7_1183	-	hypothetical protein
1177	 34.12	0	1152420..1153181	+	253	150403107	-	MmarC7_1184	-	purine phosphorylase family 2
1178	 31.24	0	1153196..1153816	+	206	150403108	-	MmarC7_1185	-	Sua5/YciO/YrdC/YwlC family protein
1179	 40.28	+1	1153889..1155169	-	426	150403109	-	MmarC7_1186	-	thiamine biosynthesis protein ThiC
1180	 33.01	0	1155259..1156188	+	309	150403110	-	MmarC7_1187	-	diphthamide biosynthesis protein
1181	 34.22	0	1157853..1158077	-	74	150403111	-	MmarC7_1190	-	hypothetical protein
1182	 29.97	-1	1158236..1158592	-	118	150403112	-	MmarC7_1191	-	transcriptional modulator of MazE/toxin, MazF
1183	 26.58	-1	1158594..1158830	-	78	150403113	-	MmarC7_1192	-	hypothetical protein
1184	 32.93	0	1159147..1163157	-	1336	150403114	-	MmarC7_1193	-	S-layer protein
1185	 34.57	0	1163831..1164154	+	107	150403115	-	MmarC7_1194	-	hypothetical protein
1186	 26.91	-1	1165488..1165736	-	82	150403116	-	MmarC7_1195	-	hypothetical protein
1187	 26.34	-2	1165949..1166491	+	180	150403117	-	MmarC7_1196	-	hypothetical protein
1188	 35.86	0	1166589..1167260	-	223	150403118	-	MmarC7_1197	-	methyltransferase type 12
1189	 34.44	0	1175789..1176508	+	239	150403119	-	MmarC7_1199	-	hypothetical protein
1190	 36.92	0	1176508..1177149	+	213	150403120	-	MmarC7_1200	-	MotA/TolQ/ExbB proton channel
1191	 35.10	0	1177143..1177481	+	112	150403121	-	MmarC7_1201	-	hypothetical protein
1192	 35.77	0	1177639..1178460	+	273	150403122	-	MmarC7_1202	-	hypothetical protein
1193	 31.86	0	1179274..1179681	+	135	150403123	-	MmarC7_1203	-	protein tyrosine phosphatase
1194	 35.42	0	1179693..1180649	+	318	150403124	-	MmarC7_1204	-	permease
1195	 30.77	0	1180682..1180915	+	77	150403125	-	MmarC7_1205	-	redox-active disulfide protein 2
1196	 37.66	0	1180985..1181515	+	176	150403126	-	MmarC7_1206	-	flavoprotein
1197	 35.46	0	1182037..1182834	+	265	150403127	-	MmarC7_1207	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1198	 33.48	0	1182844..1183509	+	221	150403128	-	MmarC7_1208	-	molybdate ABC transporter, inner membrane subunit
1199	 31.58	0	1183519..1184661	+	380	150403129	-	MmarC7_1209	-	ABC transporter related
1200	 32.85	0	1184708..1185937	+	409	150403130	-	MmarC7_1210	-	aldo/keto reductase
1201	 32.67	0	1185953..1186555	-	200	150403131	-	MmarC7_1211	-	helix-turn-helix domain-containing protein
1202	 30.89	0	1186644..1187543	+	299	150403132	-	MmarC7_1212	-	hypothetical protein
1203	 27.06	-1	1187622..1188290	+	222	150403133	-	MmarC7_1213	-	hypothetical protein
1204	 34.96	0	1188292..1190016	-	574	150403134	-	MmarC7_1214	-	glycyl-tRNA synthetase
1205	 31.63	0	1190028..1190909	-	293	150403135	-	MmarC7_1215	-	triphosphoribosyl-dephospho-CoA protein
1206	 31.35	0	1190918..1191472	-	184	150403136	-	MmarC7_1216	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1207	 29.68	-1	1191585..1191995	+	136	150403137	-	MmarC7_1217	-	hypothetical protein
1208	 30.49	0	1192134..1192871	+	245	150403138	-	MmarC7_1218	-	hypothetical protein
1209	 34.64	0	1193243..1194163	+	306	150403139	-	MmarC7_1219	-	putative manganese-dependent inorganic pyrophosphatase
1210	 37.69	0	1194322..1195791	+	489	150403140	-	MmarC7_1220	-	SSS family solute/sodium (Na+) symporter
1211	 39.22	+1	1195987..1197465	+	492	150403141	-	MmarC7_1221	-	sodium/proline symporter
1212	 28.75	-1	1197533..1197772	+	79	150403142	-	MmarC7_1222	-	hypothetical protein
1213	 33.33	0	1197782..1198057	+	91	150403143	-	MmarC7_1223	-	hypothetical protein
1214	 35.36	0	1198067..1199350	+	427	150403144	-	MmarC7_1224	-	glutamate-1-semialdehyde aminotransferase
1215	 33.93	0	1199398..1200402	-	334	150403145	-	MmarC7_1225	-	3-dehydroquinate synthase
1216	 33.33	0	1200410..1201111	-	233	150403146	-	MmarC7_1226	-	exsB protein
1217	 35.98	0	1201237..1203612	-	791	150403147	-	MmarC7_1227	-	anaerobic ribonucleoside-triphosphate reductase
1218	 33.78	0	1203783..1204904	+	373	150403148	-	MmarC7_1228	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1219	 36.48	0	1204921..1205652	-	243	150403149	-	MmarC7_1229	-	ABC transporter related
1220	 34.80	0	1205636..1206316	-	226	150403150	-	MmarC7_1230	-	polar amino acid ABC transporter, inner membrane subunit
1221	 37.55	0	1206403..1207185	-	260	150403151	-	MmarC7_1231	-	extracellular solute-binding protein
1222	 35.52	0	1207301..1207987	-	228	150403152	-	MmarC7_1232	-	metal dependent phosphohydrolase
1223	 33.60	0	1208069..1208437	+	122	150403153	-	MmarC7_1233	-	hypothetical protein
1224	 30.26	0	1208452..1209492	+	346	150403154	-	MmarC7_1234	-	peptidase A24A prepilin type IV
1225	 33.33	0	1209494..1209889	+	131	150403155	-	MmarC7_1235	-	hypothetical protein
1226	 35.34	0	1210021..1211169	+	382	150403156	-	MmarC7_1236	-	hypothetical protein
1227	 35.26	0	1211169..1212050	+	293	150403157	-	MmarC7_1237	-	hypothetical protein
1228	 33.58	0	1212083..1212481	+	132	150403158	-	MmarC7_1238	-	hypothetical protein
1229	 29.36	-1	1212459..1212911	+	150	150403159	-	MmarC7_1239	-	hypothetical protein
1230	 26.04	-2	1213002..1213508	+	168	150403160	-	MmarC7_1240	-	hypothetical protein
1231	 29.33	-1	1213513..1214361	+	282	150403161	-	MmarC7_1241	-	hypothetical protein
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.