IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1086	 34.33	0	1062318..1063727	-	469	150403016	-	MmarC7_1093	-	THUMP domain-containing protein
1087	 35.78	0	1063749..1064933	+	394	150403017	-	MmarC7_1094	-	phosphotransferase domain-containing protein
1088	 34.18	0	1064952..1066139	-	395	150403018	-	MmarC7_1095	-	GntR family transcriptional regulator
1089	 30.42	0	1066261..1066809	+	182	150403019	-	MmarC7_1096	-	helix-turn-helix domain-containing protein
1090	 42.94	+2	1066854..1067030	-	58	150403020	-	MmarC7_1097	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1091	 33.59	0	1067173..1068330	+	385	150403021	-	MmarC7_1098	-	major facilitator transporter
1092	 36.73	0	1068333..1069511	-	392	150403022	-	MmarC7_1099	-	sodium/hydrogen exchanger
1093	 33.13	0	1069530..1070012	-	160	150403023	-	MmarC7_1100	-	CBS domain-containing protein
1094	 37.09	0	1070093..1070731	+	212	150403024	-	MmarC7_1101	-	protein-L-isoaspartate O-methyltransferase
1095	 42.11	+2	1070853..1071752	+	299	150403025	-	MmarC7_1102	-	pyridoxine biosynthesis protein
1096	 30.76	0	1072784..1073404	+	206	150403026	-	MmarC7_1103	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1097	 33.69	0	1073484..1074044	+	186	150403027	-	MmarC7_1104	-	hypothetical protein
1098	 38.32	+1	1074146..1074706	+	186	150403028	-	MmarC7_1105	-	hypothetical protein
1099	 28.19	-1	1074715..1075239	+	174	150403029	-	MmarC7_1106	-	cobalt transport protein
1100	 39.63	+1	1075348..1076379	+	343	150403030	-	MmarC7_1107	-	extracellular solute-binding protein
1101	 33.70	0	1076411..1078048	+	545	150403031	-	MmarC7_1108	-	binding-protein-dependent transport systems inner membrane component
1102	 33.54	0	1078039..1079010	+	323	150403032	-	MmarC7_1109	-	ABC transporter related
1103	 24.72	-2	1079017..1079550	-	177	150403033	-	MmarC7_1110	-	hypothetical protein
1104	 31.46	0	1079560..1080840	-	426	150403034	-	MmarC7_1111	-	phosphonopyruvate decarboxylase-related protein
1105	 30.62	0	1080851..1081660	-	269	150403035	-	MmarC7_1112	-	hypothetical protein
1106	 31.35	0	1081693..1082349	-	218	150403036	-	MmarC7_1113	-	xylose isomerase domain-containing protein
1107	 41.76	+2	1082519..1083040	+	173	150403037	-	MmarC7_1114	-	nitroreductase
1108	 37.89	+1	1083163..1084194	+	343	150403038	argC	MmarC7_1115	-	N-acetyl-gamma-glutamyl-phosphate reductase
1109	 32.59	0	1084216..1084884	-	222	150403039	-	MmarC7_1116	-	hypothetical protein
1110	 35.28	0	1084931..1085548	-	205	150403040	-	MmarC7_1117	-	beta-lactamase domain-containing protein
1111	 28.65	-1	1085561..1086286	-	241	150403041	-	MmarC7_1118	-	biotin--acetyl-CoA-carboxylase ligase
1112	 32.82	0	1086267..1086653	-	128	150403042	-	MmarC7_1119	-	nucleic acid binding OB-fold tRNA/helicase-type
1113	 32.08	0	1086666..1086983	-	105	150403043	-	MmarC7_1120	-	nucleic acid binding OB-fold tRNA/helicase-type
1114	 31.33	0	1086987..1087886	-	299	150403044	-	MmarC7_1121	-	hypothetical protein
1115	 38.82	+1	1088070..1089236	+	388	150403045	purT	MmarC7_1122	-	phosphoribosylglycinamide formyltransferase 2
1116	 34.52	0	1089268..1089942	-	224	150403046	-	MmarC7_1123	-	membrane-bound metal-dependent hydrolase
1117	 37.25	0	1089981..1091513	-	510	150403047	-	MmarC7_1124	-	fibrillarin protein-like protein
1118	 34.50	0	1091543..1092568	-	341	150403048	-	MmarC7_1125	-	biotin synthase
1119	 40.38	+1	1092627..1093691	-	354	150403049	-	MmarC7_1126	-	H(2)-dependent methylenetetrahydromethanopterin dehydrogenase
1120	 28.60	-1	1093993..1094562	-	189	150403050	-	MmarC7_1127	-	cyclase family protein
1121	 34.99	0	1094574..1095296	+	240	150403051	-	MmarC7_1128	-	hypothetical protein
1122	 35.46	0	1095311..1096156	+	281	150403052	-	MmarC7_1129	-	fumarate hydratase
1123	 34.98	0	1096282..1097436	+	384	150403053	-	MmarC7_1130	-	L-tyrosine decarboxylase
1124	 35.19	0	1097486..1098349	+	287	150403054	-	MmarC7_1131	-	branched-chain amino acid aminotransferase
1125	 39.79	+1	1098422..1099924	-	500	150403055	-	MmarC7_1132	-	inosine-5'-monophosphate dehydrogenase
1126	 30.38	0	1099974..1100312	+	112	150403056	-	MmarC7_1133	-	hypothetical protein
1127	 38.19	+1	1100595..1101809	+	404	150403057	-	MmarC7_1134	-	threonine synthase
1128	 37.70	+1	1101826..1102329	+	167	150403058	-	MmarC7_1135	-	3-isopropylmalate dehydratase, small subunit
1129	 36.61	0	1102397..1103404	+	335	150403059	-	MmarC7_1136	-	putative deoxyhypusine synthase
1130	 39.44	+1	1104045..1106075	+	676	150403060	-	MmarC7_1137	-	formate dehydrogenase, alpha subunit
1131	 36.26	0	1106099..1107226	+	375	150403061	-	MmarC7_1138	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
1132	 32.77	0	1107273..1109582	-	769	150403062	-	MmarC7_1139	-	(NiFe) hydrogenase maturation protein HypF
1133	 33.79	0	1109627..1110499	-	290	150403063	-	MmarC7_1140	-	DNA topoisomerase type IA Zn finger domain-containing protein
1134	 32.80	0	1110529..1112034	-	501	150403064	-	MmarC7_1141	-	thiamine pyrophosphate binding domain-containing protein
1135	 28.42	-1	1112061..1112447	-	128	150403065	-	MmarC7_1142	-	hypothetical protein
1136	 31.65	0	1112492..1113619	-	375	150403066	-	MmarC7_1143	-	hypothetical protein
1137	 32.18	0	1113634..1114242	-	202	150403067	-	MmarC7_1144	-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase
1138	 36.74	0	1114257..1114814	-	185	150403068	-	MmarC7_1145	-	adenine phosphoribosyltransferase
1139	 34.83	0	1114839..1116245	-	468	150403069	-	MmarC7_1146	-	hypothetical protein
1140	 37.09	0	1116261..1117139	-	292	150403070	-	MmarC7_1147	-	nitrogenase reductase-like protein
1141	 39.56	+1	1117435..1119345	+	636	150403071	-	MmarC7_1148	-	acetate--CoA ligase
1142	 32.10	0	1119367..1120419	-	350	150403072	-	MmarC7_1149	-	putative RNA methylase
1143	 35.47	0	1120489..1121004	+	171	150403073	-	MmarC7_1150	-	hypothetical protein
1144	 31.94	0	1121009..1121152	+	47	150403074	rpl40e	MmarC7_1151	-	50S ribosomal protein L40e
1145	 38.63	+1	1121532..1122872	+	446	150403075	-	MmarC7_1152	-	citrate transporter
1146	 36.61	0	1123308..1124468	-	386	150403076	aksA	MmarC7_1153	-	trans-homoaconitate synthase
1147	 33.00	0	1124520..1126025	-	501	150403077	-	MmarC7_1154	-	hypothetical protein
1148	 32.55	0	1126264..1126647	+	127	150403078	-	MmarC7_1155	-	hypothetical protein
1149	 40.14	+1	1126887..1127312	+	141	150403079	-	MmarC7_1156	-	30S ribosomal protein S19e
1150	 40.28	+1	1127337..1127696	+	119	150403080	-	MmarC7_1157	-	hypothetical protein
1151	 35.54	0	1127706..1128293	+	195	150403081	-	MmarC7_1158	-	hypothetical protein
1152	 35.26	0	1128310..1128465	+	51	150403082	rpl39e	MmarC7_1159	-	50S ribosomal protein L39e
1153	 37.40	0	1128518..1129819	-	433	150403083	-	MmarC7_1160	-	phenylacetate--CoA ligase
1154	 31.59	0	1129963..1130709	-	248	150403084	-	MmarC7_1161	-	2-phosphosulfolactate phosphatase
1155	 31.01	0	1130728..1131372	+	214	150403085	-	MmarC7_1162	-	hypothetical protein
1156	 37.09	0	1131433..1132470	+	345	150403086	-	MmarC7_1163	-	arsenite-activated ATPase ArsA
1157	 39.23	+1	1132518..1132958	-	146	150403087	-	MmarC7_1164	-	sirohydrochlorin cobaltochelatase
1158	 38.32	+1	1133049..1133810	-	253	150403088	-	MmarC7_1165	-	daunorubicin resistance ABC transporter, inner membrane subunit B
1159	 36.88	0	1133820..1135202	-	460	150403089	-	MmarC7_1166	-	MATE efflux family protein
1160	 33.85	0	1135203..1136177	-	324	150403090	-	MmarC7_1167	-	daunorubicin resistance ABC transporter ATPase subunit
1161	 32.24	0	1136179..1136637	-	152	150403091	-	MmarC7_1168	-	PadR-like family transcriptional regulator
1162	 32.27	0	1136750..1137877	+	375	150403092	-	MmarC7_1169	-	peptidase M50
1163	 35.55	0	1137898..1138755	+	285	150403093	-	MmarC7_1170	-	alpha-L-glutamate ligase
1164	 34.19	0	1138802..1139503	+	233	150403094	-	MmarC7_1171	-	hypothetical protein
1165	 31.62	0	1139531..1139821	-	96	150403095	-	MmarC7_1172	-	hypothetical protein
1166	 27.85	-1	1139876..1141078	+	400	150403096	-	MmarC7_1173	-	Mur ligase middle domain-containing protein
1167	 35.15	0	1141075..1142451	-	458	150403097	-	MmarC7_1174	-	metal dependent phosphohydrolase
1168	 27.89	-1	1142594..1143052	+	152	150403098	-	MmarC7_1175	-	hypothetical protein
1169	 37.99	+1	1143090..1145492	-	800	150403099	-	MmarC7_1176	-	AAA family ATPase, CDC48 subfamily protein
1170	 35.28	0	1145608..1145967	-	119	150403100	-	MmarC7_1177	-	hypothetical protein
1171	 36.26	0	1146102..1146920	-	272	150403101	-	MmarC7_1178	-	phosphoribosylformylglycinamidine synthase I
1172	 36.46	0	1146921..1149890	-	989	150403102	-	MmarC7_1179	-	phosphoribosylformylglycinamidine synthase
1173	 39.92	+1	1150066..1150536	-	156	150403103	-	MmarC7_1180	-	riboflavin synthase
1174	 29.58	-1	1150681..1150893	-	70	150403104	-	MmarC7_1181	-	hypothetical protein
1175	 36.29	0	1151064..1151807	-	247	150403105	-	MmarC7_1182	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1176	 30.99	0	1151928..1152311	-	127	150403106	-	MmarC7_1183	-	hypothetical protein
1177	 34.12	0	1152420..1153181	+	253	150403107	-	MmarC7_1184	-	purine phosphorylase family 2
1178	 31.24	0	1153196..1153816	+	206	150403108	-	MmarC7_1185	-	Sua5/YciO/YrdC/YwlC family protein
1179	 40.28	+1	1153889..1155169	-	426	150403109	-	MmarC7_1186	-	thiamine biosynthesis protein ThiC
1180	 33.01	0	1155259..1156188	+	309	150403110	-	MmarC7_1187	-	diphthamide biosynthesis protein
1181	 34.22	0	1157853..1158077	-	74	150403111	-	MmarC7_1190	-	hypothetical protein
1182	 29.97	-1	1158236..1158592	-	118	150403112	-	MmarC7_1191	-	transcriptional modulator of MazE/toxin, MazF
1183	 26.58	-1	1158594..1158830	-	78	150403113	-	MmarC7_1192	-	hypothetical protein
1184	 32.93	0	1159147..1163157	-	1336	150403114	-	MmarC7_1193	-	S-layer protein
1185	 34.57	0	1163831..1164154	+	107	150403115	-	MmarC7_1194	-	hypothetical protein
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.