IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.95   STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
62	 37.12	0	78558..80591	-	677	150401992	-	MmarC7_0065	-	MCM family protein
63	 36.13	0	81652..82044	+	130	150401993	-	MmarC7_0066	-	hypothetical protein
64	 36.48	0	82615..83376	+	253	150401994	-	MmarC7_0067	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
65	 39.83	+1	83385..84461	-	358	150401995	-	MmarC7_0068	-	hypothetical protein
66	 41.08	+1	88418..88714	-	98	150401996	-	MmarC7_0069	-	hypothetical protein
67	 36.78	0	90284..90631	-	115	150401997	-	MmarC7_0070	-	hypothetical protein
68	 33.33	0	91807..92028	-	73	150401998	-	MmarC7_0071	-	seryl-tRNA synthetase related
69	 31.17	0	92434..92757	-	107	150401999	-	MmarC7_0072	-	hypothetical protein
70	 25.57	-2	92940..93287	-	115	150402000	-	MmarC7_0073	-	hypothetical protein
71	 27.97	-1	93372..93893	-	173	150402001	-	MmarC7_0074	-	hypothetical protein
72	 36.21	0	94127..94786	+	219	150402002	-	MmarC7_0075	-	cobalamin B12-binding domain-containing protein
73	 37.73	+1	94811..95902	+	363	150402003	-	MmarC7_0076	-	uroporphyrinogen decarboxylase
74	 36.64	0	96026..97054	+	342	150402004	-	MmarC7_0077	-	methylcobalamin:coenzyme M methyltransferase
75	 32.55	0	97054..98832	+	592	150402005	-	MmarC7_0078	-	ferredoxin
76	 29.63	-1	98890..99753	-	287	150402006	-	MmarC7_0079	-	uroporphyrinogen decarboxylase
77	 39.16	+1	99819..101123	-	434	150402007	-	MmarC7_0080	-	major facilitator transporter
78	 33.60	0	101346..102467	+	373	150402008	-	MmarC7_0081	-	2-hydroxyglutaryl-CoA dehydratase D-component
79	 30.20	-1	102506..103111	-	201	150402009	-	MmarC7_0082	-	ribonuclease H
80	 27.65	-1	103463..104131	+	222	150402010	-	MmarC7_0083	-	hypothetical protein
81	 30.97	0	104146..104610	-	154	150402011	-	MmarC7_0084	-	hypothetical protein
82	 31.80	0	104681..105268	-	195	150402012	-	MmarC7_0085	-	TetR family transcriptional regulator
83	 26.82	-1	106209..106607	+	132	150402013	-	MmarC7_0086	-	hypothetical protein
84	 25.88	-2	106712..106939	+	75	150402014	-	MmarC7_0087	-	hypothetical protein
85	 33.06	0	107041..107784	+	247	150402015	-	MmarC7_0088	-	hypothetical protein
86	 25.51	-2	107810..108154	-	114	150402016	-	MmarC7_0089	-	hypothetical protein
87	 31.85	0	108474..108743	+	89	150402017	-	MmarC7_0090	-	hypothetical protein
88	 31.50	0	108770..109369	-	199	150402018	-	MmarC7_0091	-	hypothetical protein
89	 33.54	0	109402..109875	-	157	150402019	-	MmarC7_0092	-	peptide methionine sulfoxide reductase
90	 31.89	0	110123..110746	+	207	150402020	-	MmarC7_0093	-	lysine exporter protein LysE/YggA
91	 31.18	0	110771..112024	+	417	150402021	-	MmarC7_0094	-	amino acid permease-associated region
92	 31.35	0	112031..113392	-	453	150402022	-	MmarC7_0095	-	hypothetical protein
93	 30.79	0	113437..114066	-	209	150402023	-	MmarC7_0096	-	hypothetical protein
94	 27.04	-1	114122..114598	-	158	150402024	-	MmarC7_0097	-	hypothetical protein
95	 39.37	+1	114930..115757	+	275	150402025	nifH	MmarC7_0098	-	nitrogenase reductase
96	 38.68	+1	115800..116117	+	105	150402026	-	MmarC7_0099	-	nitrogen regulatory protein P-II
97	 38.80	+1	116127..116492	+	121	150402027	-	MmarC7_0100	-	nitrogen regulatory protein P-II
98	 38.16	+1	116546..117976	+	476	150402028	-	MmarC7_0101	-	nitrogenase alpha chain
99	 38.08	+1	117969..119357	+	462	150402029	-	MmarC7_0102	-	nitrogenase
100	 38.12	+1	119381..120823	+	480	150402030	-	MmarC7_0103	-	nitrogenase MoFe cofactor biosynthesis protein NifE
101	 38.63	+1	120840..122216	+	458	150402031	-	MmarC7_0104	-	nitrogenase
102	 34.89	0	122182..122502	+	106	150402032	-	MmarC7_0105	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
103	 34.64	0	123079..124380	+	433	150402033	-	MmarC7_0106	-	lysine 2,3-aminomutase YodO family protein
104	 30.30	0	124382..125206	+	274	150402034	-	MmarC7_0107	-	GCN5-related N-acetyltransferase
105	 35.64	0	125356..125832	+	158	150402035	-	MmarC7_0108	-	CBS domain-containing protein
106	 33.59	0	125842..127008	+	388	150402036	-	MmarC7_0109	-	sodium/hydrogen exchanger
107	 35.40	0	127062..128465	-	467	150402037	-	MmarC7_0110	-	aminotransferase class-III
108	 39.41	+1	128631..129518	-	295	150402038	-	MmarC7_0111	-	substrate-binding region of ABC-type glycine betaine transport system
109	 38.49	+1	129534..130367	-	277	150402039	-	MmarC7_0112	-	binding-protein-dependent transport systems inner membrane component
110	 34.53	0	130381..131550	-	389	150402040	-	MmarC7_0113	-	glycine betaine/L-proline ABC transporter, ATPase subunit
111	 31.07	0	131897..133705	-	602	150402041	-	MmarC7_0114	-	TPR repeat-containing protein
112	 32.39	0	133865..134497	-	210	150402042	-	MmarC7_0115	-	hypothetical protein
113	 36.92	0	134779..134973	-	64	150402043	-	MmarC7_0116	-	hypothetical protein
114	 36.53	0	135137..135574	+	145	150402044	-	MmarC7_0117	-	CMP/dCMP deaminase zinc-binding
115	 33.44	0	135603..136556	+	317	150402045	-	MmarC7_0118	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
116	 36.85	0	136606..137799	+	397	150402046	-	MmarC7_0119	-	hypothetical protein
117	 35.96	0	137925..138839	+	304	150402047	-	MmarC7_0120	-	porphobilinogen deaminase
118	 30.96	0	138929..140659	+	576	150402048	-	MmarC7_0121	-	TPR repeat-containing protein
119	 29.62	-1	140670..141530	-	286	150402049	-	MmarC7_0122	-	SAM-binding motif-containing protein
120	 36.15	0	141716..143314	+	532	150402050	-	MmarC7_0123	-	S-layer protein
121	 31.63	0	143324..144382	-	352	150402051	cofG	MmarC7_0124	-	FO synthase subunit 1
122	 32.50	0	144406..145245	-	279	150402052	-	MmarC7_0125	-	nicotinate-nucleotide pyrophosphorylase
123	 32.82	0	145334..145726	+	130	150402053	-	MmarC7_0126	-	ribonuclease P-related
124	 35.66	0	145999..147543	-	514	150402054	-	MmarC7_0127	-	seryl-tRNA synthetase
125	 34.31	0	147607..148626	-	339	150402055	-	MmarC7_0128	-	isopropylmalate/isohomocitrate dehydrogenase
126	 30.56	0	148742..149101	-	119	150402056	-	MmarC7_0129	-	hypothetical protein
127	 36.28	0	149292..150173	+	293	150402057	-	MmarC7_0130	-	AIR synthase-like protein
128	 31.26	0	150215..151180	-	321	150402058	-	MmarC7_0131	-	hypothetical protein
129	 31.33	0	151212..151709	-	165	150402059	-	MmarC7_0132	-	hypothetical protein
130	 30.29	0	151805..152986	-	393	150402060	-	MmarC7_0133	-	TPR repeat-containing protein
131	 31.38	0	153184..153951	-	255	150402061	-	MmarC7_0134	-	cobalt ABC transporter, inner membrane subunit CbiQ
132	 23.76	-2	154106..154408	-	100	150402062	-	MmarC7_0135	-	stress responsive alpha-beta barrel domain-containing protein
133	 35.51	0	154528..154848	-	106	150402063	-	MmarC7_0136	-	cobalt transport protein CbiN
134	 40.22	+1	154841..155479	-	212	150402064	-	MmarC7_0137	-	cobalt transport protein CbiM
135	 31.06	0	155675..157915	+	746	150402065	-	MmarC7_0138	-	DEAD/DEAH box helicase domain-containing protein
136	 34.55	0	158132..158704	+	190	150402066	-	MmarC7_0139	-	exonuclease RNase T and DNA polymerase III
137	 26.59	-1	158737..159285	-	182	150402067	-	MmarC7_0140	-	GCN5-related N-acetyltransferase
138	 35.58	0	159453..161054	+	533	150402068	-	MmarC7_0141	-	CTP synthetase
139	 37.94	+1	161077..162009	+	310	150402069	-	MmarC7_0142	-	GMP synthase subunit B
140	 28.11	-1	162132..162725	+	197	150402070	-	MmarC7_0143	-	TPR repeat-containing protein
141	 28.77	-1	162747..164018	+	423	150402071	-	MmarC7_0144	-	polysaccharide biosynthesis protein
142	 37.16	0	164122..165348	+	408	150402072	argJ	MmarC7_0145	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
143	 30.15	-1	165476..166135	+	219	150402073	-	MmarC7_0146	-	ATP/GTP-binding motif-containing protein
144	 32.57	0	166145..166798	+	217	150402074	-	MmarC7_0147	-	rhodanese domain-containing protein
145	 34.58	0	166828..167868	-	346	150402075	-	MmarC7_0148	-	small GTP-binding protein
146	 35.88	0	167932..168324	-	130	150402076	-	MmarC7_0149	-	hypothetical protein
147	 32.46	0	168336..168563	-	75	150402077	-	MmarC7_0150	-	hypothetical protein
148	 35.29	0	168844..169914	-	356	150402078	-	MmarC7_0151	-	selenophosphate synthetase
149	 36.44	0	169932..170510	-	192	150402079	-	MmarC7_0152	-	hypothetical protein
150	 33.65	0	170520..171452	-	310	150402080	-	MmarC7_0153	-	ribonuclease Z
151	 34.61	0	171480..171872	-	130	150402081	-	MmarC7_0154	-	transcriptional regulator, TrmB
152	 33.33	0	172056..172436	+	126	150402082	-	MmarC7_0155	-	signal transduction protein
153	 35.82	0	172452..172934	+	160	150402083	-	MmarC7_0156	-	SNARE associated Golgi protein
154	 30.77	0	172963..173391	-	142	150402084	-	MmarC7_0157	-	hypothetical protein
155	 36.25	0	173430..174011	-	193	150402085	-	MmarC7_0158	-	NADPH-dependent FMN reductase
156	 30.77	0	174087..174281	-	64	150402086	-	MmarC7_0159	-	4-oxalocrotonate tautomerase
157	 32.28	0	174317..174694	-	125	150402087	-	MmarC7_0160	-	hypothetical protein
158	 35.45	0	174713..175420	-	235	150402088	-	MmarC7_0161	-	hypothetical protein
159	 30.87	0	175504..176112	+	202	150402089	-	MmarC7_0162	-	nucleotidyl transferase
160	 32.53	0	176109..176357	+	82	150402090	-	MmarC7_0163	-	PRC-barrel domain-containing protein
161	 36.09	0	176409..177242	+	277	150402091	-	MmarC7_0164	-	diaminopimelate epimerase
33.95	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.