IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1009	 31.08	0	983437..984279	+	280	150402939	-	MmarC7_1015	-	LysR family transcriptional regulator
1010	 35.66	0	984398..984526	-	42	150402940	-	MmarC7_1016	-	hypothetical protein
1011	 39.91	+1	984627..985052	-	141	150402941	-	MmarC7_1017	-	nickel responsive regulator
1012	 30.25	0	985171..986046	+	291	150402942	-	MmarC7_1018	-	hypothetical protein
1013	 28.87	-1	986051..986386	-	111	150402943	-	MmarC7_1019	-	hypothetical protein
1014	 36.36	0	986383..987207	-	274	150402944	-	MmarC7_1020	-	hypothetical protein
1015	 34.32	0	987373..988488	+	371	150402945	-	MmarC7_1021	-	ATPase central domain-containing protein
1016	 35.16	0	988521..988793	-	90	150402946	-	MmarC7_1022	-	hypothetical protein
1017	 37.49	0	988860..992255	-	1131	150402947	-	MmarC7_1023	-	DNA polymerase II large subunit
1018	 32.84	0	998041..999048	-	335	150402948	-	MmarC7_1024	-	TrkA domain-containing protein
1019	 28.03	-1	999120..1000571	+	483	150402949	-	MmarC7_1025	-	cobyrinic acid a,c-diamide synthase
1020	 31.61	0	1000619..1001257	-	212	150402950	-	MmarC7_1026	-	hypothetical protein
1021	 32.00	0	1001460..1003490	+	676	150402951	-	MmarC7_1027	-	MCM family protein
1022	 23.65	-2	1003507..1004580	+	357	150402952	-	MmarC7_1028	-	regulatory protein, ArsR
1023	 24.47	-2	1005172..1005690	-	172	150402953	-	MmarC7_1029	-	transcription regulator ArsR
1024	 33.01	0	1006300..1007526	+	408	150402954	-	MmarC7_1030	-	regulatory protein ArsR
1025	 34.92	0	1007547..1008494	+	315	150402955	-	MmarC7_1031	-	GTP cyclohydrolase
1026	 29.90	-1	1008520..1009569	+	349	150402956	-	MmarC7_1032	-	hypothetical protein
1027	 31.36	0	1009573..1010130	+	185	150402957	-	MmarC7_1033	-	transcription initiation factor E subunit alpha
1028	 25.81	-2	1010140..1010724	+	194	150402958	-	MmarC7_1034	-	metal dependent phosphohydrolase
1029	 32.66	0	1010726..1011622	-	298	150402959	-	MmarC7_1035	-	type II secretion system protein
1030	 35.62	0	1012696..1014354	-	552	150402960	-	MmarC7_1037	-	type II secretion system protein E
1031	 38.14	+1	1014364..1015383	-	339	150402961	tfb	MmarC7_1038	-	transcription initiation factor IIB
1032	 31.21	0	1015402..1015683	-	93	150402962	-	MmarC7_1039	-	H/ACA RNA-protein complex component Gar1
1033	 36.42	0	1016171..1017238	+	355	150402963	-	MmarC7_1040	-	isopentenyl pyrophosphate isomerase
1034	 37.71	+1	1017311..1018657	+	448	150402964	-	MmarC7_1041	-	beta-lactamase domain-containing protein
1035	 34.28	0	1018671..1019624	+	317	150402965	-	MmarC7_1042	-	polyprenyl synthetase
1036	 31.57	0	1019675..1020127	+	150	150402966	-	MmarC7_1043	-	hypothetical protein
1037	 31.89	0	1020132..1021241	-	369	150402967	-	MmarC7_1044	-	radical SAM domain-containing protein
1038	 32.60	0	1021299..1021571	+	90	150402968	-	MmarC7_1045	-	hypothetical protein
1039	 38.49	+1	1021601..1022065	+	154	150402969	-	MmarC7_1046	-	carbonic anhydrase
1040	 38.65	+1	1022114..1022527	+	137	150402970	ribH	MmarC7_1047	-	riboflavin synthase subunit beta
1041	 32.30	0	1022566..1022856	+	96	150402971	hisE	MmarC7_1048	-	phosphoribosyl-ATP pyrophosphatase
1042	 33.77	0	1022858..1023769	-	303	150402972	-	MmarC7_1049	-	signal transduction protein
1043	 31.17	0	1023900..1024640	-	246	150402973	-	MmarC7_1050	-	hypothetical protein
1044	 31.36	0	1024637..1025245	-	202	150402974	-	MmarC7_1051	-	putative methylase
1045	 34.17	0	1025259..1025738	-	159	150402975	-	MmarC7_1052	-	PUA domain-containing protein
1046	 35.58	0	1025845..1026957	-	370	150402976	-	MmarC7_1053	-	FO synthase subunit 2
1047	 34.91	0	1027042..1028118	-	358	150402977	-	MmarC7_1054	-	FO synthase subunit 2
1048	 40.71	+1	1028350..1029312	+	320	150402978	-	MmarC7_1055	-	methylenetetrahydromethanopterin reductase
1049	 28.61	-1	1029377..1029799	-	140	150402979	-	MmarC7_1056	-	hypothetical protein
1050	 33.33	0	1029911..1030141	-	76	150402980	-	MmarC7_1057	-	ribosomal LX protein
1051	 36.55	0	1030160..1030843	-	227	150402981	-	MmarC7_1058	-	translation initiation factor IF-6
1052	 32.54	0	1030880..1031131	-	83	150402982	-	MmarC7_1059	-	50S ribosomal protein L31e
1053	 38.64	+1	1031227..1032111	+	294	150402983	-	MmarC7_1060	-	acetylglutamate kinase
1054	 37.46	0	1032511..1032849	+	112	150402984	-	MmarC7_1061	-	nitrogen regulatory protein P-II
1055	 43.19	+2	1032876..1034102	+	408	150402985	-	MmarC7_1062	-	ammonium transporter
1056	 35.40	0	1034211..1034549	+	112	150402986	-	MmarC7_1063	-	nitrogen regulatory protein P-II
1057	 34.51	0	1034758..1035096	+	112	150402987	-	MmarC7_1064	-	nitrogen regulatory protein P-II
1058	 40.21	+1	1035115..1036350	+	411	150402988	-	MmarC7_1065	-	ammonium transporter
1059	 38.94	+1	1036558..1036896	+	112	150402989	-	MmarC7_1066	-	nitrogen regulatory protein P-II
1060	 39.72	+1	1036923..1038158	+	411	150402990	-	MmarC7_1067	-	ammonium transporter
1061	 31.00	0	1038218..1038517	+	99	150402991	-	MmarC7_1068	-	methylated-DNA--protein-cysteine methyltransferase
1062	 31.10	0	1038786..1039724	+	312	150402992	-	MmarC7_1069	-	glutamate synthase alpha subunit
1063	 33.33	0	1040246..1041337	-	363	150402993	-	MmarC7_1070	-	putative DNA primase, small subunit
1064	 34.96	0	1041458..1042441	+	327	150402994	-	MmarC7_1071	-	hydantoinase/oxoprolinase
1065	 36.85	0	1042573..1043766	+	397	150402995	-	MmarC7_1072	-	argininosuccinate synthase
1066	 36.69	0	1043836..1044192	+	118	150402996	-	MmarC7_1073	-	hypothetical protein
1067	 30.24	0	1044181..1045149	-	322	150402997	-	MmarC7_1074	-	abortive infection protein
1068	 38.57	+1	1045219..1045428	-	69	150402998	-	MmarC7_1075	-	deoxyribonuclease
1069	 35.39	0	1045573..1046301	+	242	150402999	-	MmarC7_1076	-	radical SAM domain-containing protein
1070	 34.30	0	1046444..1047061	+	205	150403000	-	MmarC7_1077	-	orotate phosphoribosyltransferase
1071	 38.64	+1	1047208..1048299	+	363	150403001	-	MmarC7_1078	-	glutamine amidotransferase class-II
1072	 40.25	+1	1048327..1049859	+	510	150403002	-	MmarC7_1079	-	glutamate synthase (NADPH)
1073	 37.88	+1	1049859..1050650	+	263	150403003	-	MmarC7_1080	-	glutamate synthase alpha subunit
1074	 35.83	0	1050683..1051762	+	359	150403004	-	MmarC7_1081	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
1075	 35.57	0	1051861..1054053	-	730	150403005	-	MmarC7_1082	-	methyl-accepting chemotaxis sensory transducer
1076	 32.25	0	1054436..1055176	-	246	150403006	-	MmarC7_1083	-	hypothetical protein
1077	 33.91	0	1055185..1056231	-	348	150403007	-	MmarC7_1084	-	putative translation factor pelota
1078	 34.93	0	1056249..1056686	-	145	150403008	-	MmarC7_1085	-	putative transcriptional regulator
1079	 37.98	+1	1056805..1058031	-	408	150403009	-	MmarC7_1086	-	3-hydroxy-3-methylglutaryl coenzyme A reductase
1080	 33.68	0	1058021..1059169	-	382	150403010	hemA	MmarC7_1087	-	glutamyl-tRNA reductase
1081	 27.89	-1	1059174..1059779	-	201	150403011	-	MmarC7_1088	-	siroheme synthase
1082	 27.90	-1	1059794..1060861	-	355	150403012	-	MmarC7_1089	-	glycosyl transferase group 1
1083	 34.19	0	1060881..1061465	-	194	150403013	-	MmarC7_1090	-	hypothetical protein
1084	 33.02	0	1061567..1061890	-	107	150403014	-	MmarC7_1091	-	RNA polymerase Rpb4
1085	 38.44	+1	1061939..1062232	-	97	150403015	-	MmarC7_1092	-	50S ribosomal protein L21e
1086	 34.33	0	1062318..1063727	-	469	150403016	-	MmarC7_1093	-	THUMP domain-containing protein
1087	 35.78	0	1063749..1064933	+	394	150403017	-	MmarC7_1094	-	phosphotransferase domain-containing protein
1088	 34.18	0	1064952..1066139	-	395	150403018	-	MmarC7_1095	-	GntR family transcriptional regulator
1089	 30.42	0	1066261..1066809	+	182	150403019	-	MmarC7_1096	-	helix-turn-helix domain-containing protein
1090	 42.94	+2	1066854..1067030	-	58	150403020	-	MmarC7_1097	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1091	 33.59	0	1067173..1068330	+	385	150403021	-	MmarC7_1098	-	major facilitator transporter
1092	 36.73	0	1068333..1069511	-	392	150403022	-	MmarC7_1099	-	sodium/hydrogen exchanger
1093	 33.13	0	1069530..1070012	-	160	150403023	-	MmarC7_1100	-	CBS domain-containing protein
1094	 37.09	0	1070093..1070731	+	212	150403024	-	MmarC7_1101	-	protein-L-isoaspartate O-methyltransferase
1095	 42.11	+2	1070853..1071752	+	299	150403025	-	MmarC7_1102	-	pyridoxine biosynthesis protein
1096	 30.76	0	1072784..1073404	+	206	150403026	-	MmarC7_1103	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1097	 33.69	0	1073484..1074044	+	186	150403027	-	MmarC7_1104	-	hypothetical protein
1098	 38.32	+1	1074146..1074706	+	186	150403028	-	MmarC7_1105	-	hypothetical protein
1099	 28.19	-1	1074715..1075239	+	174	150403029	-	MmarC7_1106	-	cobalt transport protein
1100	 39.63	+1	1075348..1076379	+	343	150403030	-	MmarC7_1107	-	extracellular solute-binding protein
1101	 33.70	0	1076411..1078048	+	545	150403031	-	MmarC7_1108	-	binding-protein-dependent transport systems inner membrane component
1102	 33.54	0	1078039..1079010	+	323	150403032	-	MmarC7_1109	-	ABC transporter related
1103	 24.72	-2	1079017..1079550	-	177	150403033	-	MmarC7_1110	-	hypothetical protein
1104	 31.46	0	1079560..1080840	-	426	150403034	-	MmarC7_1111	-	phosphonopyruvate decarboxylase-related protein
1105	 30.62	0	1080851..1081660	-	269	150403035	-	MmarC7_1112	-	hypothetical protein
1106	 31.35	0	1081693..1082349	-	218	150403036	-	MmarC7_1113	-	xylose isomerase domain-containing protein
1107	 41.76	+2	1082519..1083040	+	173	150403037	-	MmarC7_1114	-	nitroreductase
1108	 37.89	+1	1083163..1084194	+	343	150403038	argC	MmarC7_1115	-	N-acetyl-gamma-glutamyl-phosphate reductase
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.