IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
961	 39.90	+1	927204..928391	-	395	150402891	-	MmarC7_0967	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
962	 36.30	0	928480..928614	-	44	150402892	-	MmarC7_0968	-	F420 non-reducing hydrogenase subunit
963	 39.70	+1	928629..929885	-	418	150402893	-	MmarC7_0969	-	nickel-dependent hydrogenase large subunit
964	 41.64	+2	929926..930792	-	288	150402894	-	MmarC7_0970	-	NADH ubiquinone oxidoreductase 20 kDa subunit
965	 40.99	+1	930891..931295	-	134	150402895	-	MmarC7_0971	-	methyl-viologen-reducing hydrogenase delta subunit
966	 42.44	+2	931484..933460	-	658	150402896	-	MmarC7_0972	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
967	 33.89	0	934170..934706	+	178	150402897	-	MmarC7_0973	-	hypothetical protein
968	 36.98	0	935045..935236	+	63	150402898	-	MmarC7_0974	-	hypothetical protein
969	 39.33	+1	935237..936838	+	533	150402899	-	MmarC7_0975	-	SSS family solute/sodium (Na+) symporter
970	 34.58	0	936999..937481	+	160	150402900	-	MmarC7_0976	-	amino acid-binding ACT domain-containing protein
971	 35.70	0	937492..938505	+	337	150402901	-	MmarC7_0977	-	homoserine dehydrogenase
972	 27.54	-1	938711..939607	+	298	150402902	-	MmarC7_0978	-	hypothetical protein
973	 38.38	+1	939604..940059	-	151	150402903	-	MmarC7_0979	-	hypothetical protein
974	 32.88	0	940069..940734	-	221	150402904	-	MmarC7_0980	-	creatininase
975	 33.97	0	940740..940895	-	51	150402905	-	MmarC7_0981	-	H/ACA RNA-protein complex component Nop10p
976	 37.22	0	940904..941701	-	265	150402906	-	MmarC7_0982	-	translation initiation factor IF-2 subunit alpha
977	 34.41	0	941815..942000	-	61	150402907	rps27e	MmarC7_0983	-	30S ribosomal protein S27e
978	 37.59	0	942023..942304	-	93	150402908	rpl44e	MmarC7_0984	-	50S ribosomal protein L44e
979	 29.42	-1	942261..942848	-	195	150402909	-	MmarC7_0985	-	hypothetical protein
980	 34.93	0	942884..943636	-	250	150402910	-	MmarC7_0986	-	proliferating cell nuclear antigen PcnA
981	 35.02	0	943712..944602	-	296	150402911	-	MmarC7_0987	-	LysR family transcriptional regulator
982	 29.49	-1	944667..945680	+	337	150402912	-	MmarC7_0988	-	hypothetical protein
983	 38.55	+1	945850..946194	-	114	150402913	-	MmarC7_0989	-	roadblock/LC7 family protein
984	 33.33	0	946209..946682	-	157	150402914	-	MmarC7_0990	-	small GTP-binding protein
985	 37.82	+1	946693..947718	-	341	150402915	-	MmarC7_0991	-	H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein
986	 31.67	0	947772..948854	-	360	150402916	-	MmarC7_0992	-	methyltransferase type 12
987	 36.16	0	948859..949176	-	105	150402917	-	MmarC7_0993	-	hypothetical protein
988	 33.03	0	949352..952006	-	884	150402918	-	MmarC7_0994	-	hypothetical protein
989	 32.77	0	952190..953980	+	596	150402919	-	MmarC7_0995	-	hypothetical protein
990	 34.46	0	953992..954789	+	265	150402920	-	MmarC7_0996	-	hypothetical protein
991	 35.65	0	954822..955640	+	272	150402921	-	MmarC7_0997	-	imidazoleglycerol phosphate synthase, cyclase subunit
992	 36.92	0	965748..966026	+	92	150402922	-	MmarC7_0998	-	hypothetical protein
993	 34.18	0	966054..967118	+	354	150402923	-	MmarC7_0999	-	L-seryl-tRNA selenium transferase
994	 39.74	+1	967144..968235	-	363	150402924	-	MmarC7_1000	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
995	 34.34	0	968274..969170	-	298	150402925	-	MmarC7_1001	-	protein of unknown function RIO1
996	 29.01	-1	969264..970859	-	531	150402926	-	MmarC7_1002	-	hypothetical protein
997	 35.64	0	970973..972058	+	361	150402927	-	MmarC7_1003	-	3-dehydroquinate synthase
998	 37.61	0	972480..973250	+	256	150402928	-	MmarC7_1004	-	geranylgeranylglyceryl phosphate synthase-like protein
999	 35.06	0	973268..975004	-	578	150402929	-	MmarC7_1005	-	DNA polymerase II small subunit
1000	 33.78	0	975015..976124	-	369	150402930	-	MmarC7_1006	-	DNA primase, large subunit
1001	 34.51	0	976153..976578	-	141	150402931	-	MmarC7_1007	-	hypothetical protein
1002	 33.61	0	976605..977708	-	367	150402932	-	MmarC7_1008	-	DNA-cytosine methyltransferase
1003	 26.67	-1	977746..978195	+	149	150402933	-	MmarC7_1009	-	CoA-binding domain-containing protein
1004	 35.68	0	978237..979682	+	481	150402934	-	MmarC7_1010	-	argininosuccinate lyase
1005	 28.21	-1	979695..980864	-	389	150402935	truD	MmarC7_1011	-	tRNA pseudouridine synthase D
1006	 29.60	-1	980873..981676	-	267	150402936	-	MmarC7_1012	-	hypothetical protein
1007	 34.15	0	981690..982181	-	163	150402937	-	MmarC7_1013	-	hypothetical protein
1008	 32.95	0	982316..983368	-	350	150402938	-	MmarC7_1014	-	hypothetical protein
1009	 31.08	0	983437..984279	+	280	150402939	-	MmarC7_1015	-	LysR family transcriptional regulator
1010	 35.66	0	984398..984526	-	42	150402940	-	MmarC7_1016	-	hypothetical protein
1011	 39.91	+1	984627..985052	-	141	150402941	-	MmarC7_1017	-	nickel responsive regulator
1012	 30.25	0	985171..986046	+	291	150402942	-	MmarC7_1018	-	hypothetical protein
1013	 28.87	-1	986051..986386	-	111	150402943	-	MmarC7_1019	-	hypothetical protein
1014	 36.36	0	986383..987207	-	274	150402944	-	MmarC7_1020	-	hypothetical protein
1015	 34.32	0	987373..988488	+	371	150402945	-	MmarC7_1021	-	ATPase central domain-containing protein
1016	 35.16	0	988521..988793	-	90	150402946	-	MmarC7_1022	-	hypothetical protein
1017	 37.49	0	988860..992255	-	1131	150402947	-	MmarC7_1023	-	DNA polymerase II large subunit
1018	 32.84	0	998041..999048	-	335	150402948	-	MmarC7_1024	-	TrkA domain-containing protein
1019	 28.03	-1	999120..1000571	+	483	150402949	-	MmarC7_1025	-	cobyrinic acid a,c-diamide synthase
1020	 31.61	0	1000619..1001257	-	212	150402950	-	MmarC7_1026	-	hypothetical protein
1021	 32.00	0	1001460..1003490	+	676	150402951	-	MmarC7_1027	-	MCM family protein
1022	 23.65	-2	1003507..1004580	+	357	150402952	-	MmarC7_1028	-	regulatory protein, ArsR
1023	 24.47	-2	1005172..1005690	-	172	150402953	-	MmarC7_1029	-	transcription regulator ArsR
1024	 33.01	0	1006300..1007526	+	408	150402954	-	MmarC7_1030	-	regulatory protein ArsR
1025	 34.92	0	1007547..1008494	+	315	150402955	-	MmarC7_1031	-	GTP cyclohydrolase
1026	 29.90	-1	1008520..1009569	+	349	150402956	-	MmarC7_1032	-	hypothetical protein
1027	 31.36	0	1009573..1010130	+	185	150402957	-	MmarC7_1033	-	transcription initiation factor E subunit alpha
1028	 25.81	-2	1010140..1010724	+	194	150402958	-	MmarC7_1034	-	metal dependent phosphohydrolase
1029	 32.66	0	1010726..1011622	-	298	150402959	-	MmarC7_1035	-	type II secretion system protein
1030	 35.62	0	1012696..1014354	-	552	150402960	-	MmarC7_1037	-	type II secretion system protein E
1031	 38.14	+1	1014364..1015383	-	339	150402961	tfb	MmarC7_1038	-	transcription initiation factor IIB
1032	 31.21	0	1015402..1015683	-	93	150402962	-	MmarC7_1039	-	H/ACA RNA-protein complex component Gar1
1033	 36.42	0	1016171..1017238	+	355	150402963	-	MmarC7_1040	-	isopentenyl pyrophosphate isomerase
1034	 37.71	+1	1017311..1018657	+	448	150402964	-	MmarC7_1041	-	beta-lactamase domain-containing protein
1035	 34.28	0	1018671..1019624	+	317	150402965	-	MmarC7_1042	-	polyprenyl synthetase
1036	 31.57	0	1019675..1020127	+	150	150402966	-	MmarC7_1043	-	hypothetical protein
1037	 31.89	0	1020132..1021241	-	369	150402967	-	MmarC7_1044	-	radical SAM domain-containing protein
1038	 32.60	0	1021299..1021571	+	90	150402968	-	MmarC7_1045	-	hypothetical protein
1039	 38.49	+1	1021601..1022065	+	154	150402969	-	MmarC7_1046	-	carbonic anhydrase
1040	 38.65	+1	1022114..1022527	+	137	150402970	ribH	MmarC7_1047	-	riboflavin synthase subunit beta
1041	 32.30	0	1022566..1022856	+	96	150402971	hisE	MmarC7_1048	-	phosphoribosyl-ATP pyrophosphatase
1042	 33.77	0	1022858..1023769	-	303	150402972	-	MmarC7_1049	-	signal transduction protein
1043	 31.17	0	1023900..1024640	-	246	150402973	-	MmarC7_1050	-	hypothetical protein
1044	 31.36	0	1024637..1025245	-	202	150402974	-	MmarC7_1051	-	putative methylase
1045	 34.17	0	1025259..1025738	-	159	150402975	-	MmarC7_1052	-	PUA domain-containing protein
1046	 35.58	0	1025845..1026957	-	370	150402976	-	MmarC7_1053	-	FO synthase subunit 2
1047	 34.91	0	1027042..1028118	-	358	150402977	-	MmarC7_1054	-	FO synthase subunit 2
1048	 40.71	+1	1028350..1029312	+	320	150402978	-	MmarC7_1055	-	methylenetetrahydromethanopterin reductase
1049	 28.61	-1	1029377..1029799	-	140	150402979	-	MmarC7_1056	-	hypothetical protein
1050	 33.33	0	1029911..1030141	-	76	150402980	-	MmarC7_1057	-	ribosomal LX protein
1051	 36.55	0	1030160..1030843	-	227	150402981	-	MmarC7_1058	-	translation initiation factor IF-6
1052	 32.54	0	1030880..1031131	-	83	150402982	-	MmarC7_1059	-	50S ribosomal protein L31e
1053	 38.64	+1	1031227..1032111	+	294	150402983	-	MmarC7_1060	-	acetylglutamate kinase
1054	 37.46	0	1032511..1032849	+	112	150402984	-	MmarC7_1061	-	nitrogen regulatory protein P-II
1055	 43.19	+2	1032876..1034102	+	408	150402985	-	MmarC7_1062	-	ammonium transporter
1056	 35.40	0	1034211..1034549	+	112	150402986	-	MmarC7_1063	-	nitrogen regulatory protein P-II
1057	 34.51	0	1034758..1035096	+	112	150402987	-	MmarC7_1064	-	nitrogen regulatory protein P-II
1058	 40.21	+1	1035115..1036350	+	411	150402988	-	MmarC7_1065	-	ammonium transporter
1059	 38.94	+1	1036558..1036896	+	112	150402989	-	MmarC7_1066	-	nitrogen regulatory protein P-II
1060	 39.72	+1	1036923..1038158	+	411	150402990	-	MmarC7_1067	-	ammonium transporter
33.95	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.