IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
907	 46.26	0	1040107..1041336	-	409	88602229	-	Mhun_0938	-	hypothetical protein
908	 44.78	0	1041360..1041953	-	197	88602230	-	Mhun_0939	-	5-deoxyadenosylcobinamide phosphate nucleotidyltransferase
909	 42.79	0	1041938..1042942	-	334	88602231	-	Mhun_0940	-	aminotransferase, class I and II
910	 52.63	+1	1043133..1043303	+	56	88602232	-	Mhun_0941	-	transcriptional regulator
911	 47.78	0	1043323..1044492	+	389	88602233	-	Mhun_0942	-	cell division protein FtsZ
912	 43.32	0	1045000..1045860	+	286	88602234	-	Mhun_0943	-	putative phosphoserine phosphatase
913	 43.34	0	1045920..1047038	+	372	88602235	-	Mhun_0944	-	hypothetical protein
914	 43.72	0	1047137..1048339	+	400	88602236	-	Mhun_0945	-	PKD
915	 45.11	0	1048398..1049594	+	398	88602237	-	Mhun_0946	-	hypothetical protein
916	 42.70	0	1049664..1051904	+	746	88602238	-	Mhun_0947	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
917	 41.48	0	1052108..1053481	+	457	88602239	-	Mhun_0948	-	hypothetical protein
918	 41.56	0	1053564..1056929	+	1121	88602240	-	Mhun_0949	-	TPR repeat-containing protein
919	 47.07	0	1056980..1057729	+	249	88602241	-	Mhun_0950	-	hypothetical protein
920	 40.79	0	1057935..1061933	+	1332	88602242	-	Mhun_0951	-	methyl-accepting chemotaxis sensory transducer
921	 42.57	0	1061936..1062487	-	183	88602243	-	Mhun_0952	-	CheB methylesterase
922	 38.97	-1	1062501..1062908	-	135	88602244	-	Mhun_0953	-	response regulator receiver domain-containing protein
923	 39.36	-1	1063106..1064449	+	447	88602245	-	Mhun_0954	-	nucleic acid binding, OB-fold, tRNA/helicase-type
924	 39.88	-1	1064507..1066414	+	635	88602246	-	Mhun_0955	-	tetratricopeptide TPR_2
925	 45.88	0	1066424..1067650	-	408	88602247	-	Mhun_0956	-	S-adenosyl-L-homocysteine hydrolase
926	 47.67	0	1067764..1068579	+	271	88602248	-	Mhun_0957	-	imidazoleglycerol phosphate synthase, cyclase subunit
927	 43.59	0	1068581..1069321	-	246	88602249	-	Mhun_0958	-	hypothetical protein
928	 39.15	-1	1069906..1070679	+	257	88602250	-	Mhun_0959	-	ATPases involved in chromosome partitioning-like
929	 39.44	-1	1070679..1073018	+	779	88602251	-	Mhun_0960	-	CheW protein
930	 37.56	-1	1073046..1073897	+	283	88602252	-	Mhun_0961	-	MCP methyltransferase, CheR-type
931	 42.24	0	1074291..1075514	+	407	88602253	-	Mhun_0962	-	hypothetical protein
932	 42.56	0	1075511..1076095	-	194	88602254	-	Mhun_0963	-	molybdopterin-guanine dinucleotide biosynthesis protein A
933	 45.09	0	1076092..1076559	-	155	88602255	-	Mhun_0964	-	methylated-DNA--protein-cysteine methyltransferase
934	 44.83	0	1076559..1078523	-	654	88602256	-	Mhun_0965	-	helicase c2
935	 36.76	-1	1078648..1079055	-	135	88602257	-	Mhun_0966	-	hemerythrin-like, metal-binding
936	 35.51	-2	1079156..1081318	+	720	88602258	-	Mhun_0967	-	periplasmic copper-binding
937	 45.01	0	1081539..1083071	+	510	88602259	-	Mhun_0968	-	amino acid permease-associated region
938	 37.72	-1	1083092..1084162	+	356	88602260	-	Mhun_0969	-	magnesium and cobalt transport protein CorA
939	 43.23	0	1084159..1088745	-	1528	88602261	-	Mhun_0970	-	PKD
940	 39.12	-1	1089248..1089610	+	120	88602262	-	Mhun_0971	-	hypothetical protein
941	 46.65	0	1089617..1091215	-	532	88602263	-	Mhun_0972	-	chaperonin Cpn60/TCP-1
942	 49.26	0	1091295..1091903	-	202	88602264	-	Mhun_0973	-	orotate phosphoribosyltransferase
943	 42.86	0	1091914..1092396	-	160	88602265	-	Mhun_0974	-	nucleic acid binding protein
944	 46.31	0	1092412..1093251	-	279	88602266	-	Mhun_0975	-	ribose-phosphate pyrophosphokinase
945	 47.87	0	1093337..1095379	+	680	88602267	-	Mhun_0976	-	ATP-dependent protease Lon
946	 48.01	0	1095379..1096713	+	444	88602268	-	Mhun_0977	-	peptidase U62, modulator of DNA gyrase
947	 45.87	0	1096706..1097989	+	427	88602269	-	Mhun_0978	-	peptidase U62, modulator of DNA gyrase
948	 44.75	0	1097990..1098760	+	256	88602270	-	Mhun_0979	-	dehydroquinase class I
949	 44.44	0	1098776..1099036	+	86	88602271	-	Mhun_0980	-	hypothetical protein
950	 43.15	0	1099167..1099910	+	247	88602272	-	Mhun_0981	-	hypothetical protein
951	 44.66	0	1099912..1102497	-	861	88602273	-	Mhun_0982	-	copper-translocating P-type ATPase
952	 43.85	0	1102587..1103375	+	262	88602274	-	Mhun_0983	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
953	 45.48	0	1103384..1104157	-	257	88602275	-	Mhun_0984	-	hypothetical protein
954	 46.63	0	1104207..1106327	-	706	88602276	-	Mhun_0985	-	MCM
955	 40.86	0	1106389..1107690	-	433	88602277	-	Mhun_0986	-	response regulator receiver sensor signal transduction histidine kinase
956	 41.81	0	1107683..1109038	-	451	88602278	-	Mhun_0987	-	response regulator receiver sensor signal transduction histidine kinase
957	 45.68	0	1109035..1110087	-	350	88602279	-	Mhun_0988	-	response regulator receiver (CheY-like) modulated CheB methylesterase
958	 45.10	0	1110084..1112378	-	764	88602280	-	Mhun_0989	-	CheA signal transduction histidine kinases
959	 43.31	0	1112389..1114863	-	824	88602281	-	Mhun_0990	-	methyl-accepting chemotaxis sensory transducer
960	 42.93	0	1114966..1115517	-	183	88602282	-	Mhun_0991	-	CheW protein
961	 44.68	0	1115527..1117068	-	513	88602283	-	Mhun_0992	-	MCP methyltransferase, CheR-type
962	 44.25	0	1117065..1117568	-	167	88602284	-	Mhun_0993	-	CheW protein
963	 48.15	0	1117549..1118520	-	323	88602285	rfc	Mhun_0994	-	replication factor C small subunit
964	 46.02	0	1118609..1120453	-	614	88602286	-	Mhun_0995	-	tetratricopeptide TPR_2
965	 45.98	0	1120537..1122441	-	634	88602287	-	Mhun_0996	-	TPR repeat-containing protein
966	 43.85	0	1122915..1123532	-	205	88602288	-	Mhun_0997	-	hypothetical protein
967	 41.16	0	1124307..1124600	-	97	88602289	-	Mhun_0998	-	hypothetical protein
968	 40.32	-1	1124769..1125212	+	147	88602290	-	Mhun_0999	-	hypothetical protein
969	 44.24	0	1125628..1127799	-	723	88602291	-	Mhun_1000	-	Phage/plasmid primase P4-like
970	 41.47	0	1127792..1128172	-	126	88602292	-	Mhun_1001	-	hypothetical protein
971	 41.97	0	1128540..1129766	-	408	88602293	-	Mhun_1002	-	phage integrase
972	 44.73	0	1130675..1132060	-	461	88602294	-	Mhun_1003	-	hypothetical protein
973	 44.26	0	1132084..1132797	-	237	88602295	-	Mhun_1004	-	ABC transporter related
974	 47.06	0	1132975..1134744	-	589	88602296	-	Mhun_1005	-	aldehyde ferredoxin oxidoreductase
975	 49.72	0	1134734..1135093	-	119	88602297	-	Mhun_1006	-	4Fe-4S ferredoxin, iron-sulfur binding
976	 46.21	0	1135226..1137058	-	610	88602298	-	Mhun_1007	-	threonyl-tRNA synthetase
977	 46.06	0	1137178..1137735	-	185	88602299	-	Mhun_1008	-	deoxycytidine triphosphate deaminase
978	 47.22	0	1137757..1138512	-	251	88602300	-	Mhun_1009	-	RNA methyltransferase TrmH, group 1
979	 47.31	0	1138516..1139202	-	228	88602301	-	Mhun_1010	-	geranylgeranylglyceryl phosphate synthase-like protein
980	 47.93	0	1139275..1142070	-	931	88602302	-	Mhun_1011	-	DNA topoisomerase
981	 48.49	0	1142075..1143499	-	474	88602303	gatB	Mhun_1012	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
982	 48.77	0	1143499..1144794	-	431	88602304	-	Mhun_1013	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
983	 43.70	0	1144796..1145065	-	89	88602305	-	Mhun_1014	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
984	 48.18	0	1145073..1146062	-	329	88602306	-	Mhun_1015	-	asparagine synthase
985	 44.51	0	1146202..1147239	+	345	88602307	-	Mhun_1016	-	hypothetical protein
986	 40.62	-1	1147256..1147735	+	159	88602308	-	Mhun_1017	-	hypothetical protein
987	 46.60	0	1147730..1149010	-	426	88602309	-	Mhun_1018	-	phosphopyruvate hydratase
988	 46.42	0	1149022..1149678	-	218	88602310	-	Mhun_1019	-	hypothetical protein
989	 45.22	0	1149783..1150682	+	299	88602311	-	Mhun_1020	-	8-oxoguanine DNA glycosylase-like
990	 46.00	0	1150657..1151832	-	391	88602312	-	Mhun_1021	-	phosphate transporter
991	 42.70	0	1151838..1152467	-	209	88602313	-	Mhun_1022	-	hypothetical protein
992	 47.84	0	1152516..1153721	-	401	88602314	-	Mhun_1023	-	phosphate transporter
993	 39.49	-1	1153725..1154357	-	210	88602315	-	Mhun_1024	-	phosphate transport regulator-like
994	 42.62	0	1154431..1154979	-	182	88602316	-	Mhun_1025	-	hypothetical protein
995	 43.99	0	1155139..1156818	+	559	88602317	-	Mhun_1026	-	putative PAS/PAC sensor protein
996	 46.35	0	1156819..1157502	-	227	88602318	-	Mhun_1027	-	triosephosphate isomerase
997	 45.83	0	1157581..1160085	-	834	88602319	-	Mhun_1028	-	peptidase U32
998	 47.92	0	1160095..1161102	-	335	88602320	-	Mhun_1029	-	chorismate synthase
999	 47.03	0	1161099..1162463	-	454	88602321	-	Mhun_1030	-	shikimate 5-dehydrogenase
1000	 49.11	0	1162457..1163749	-	430	88602322	-	Mhun_1031	-	3-phosphoshikimate 1-carboxyvinyltransferase
1001	 45.41	0	1163740..1164534	-	264	88602323	-	Mhun_1032	-	prephenate dehydratase
1002	 48.36	0	1164531..1165355	-	274	88602324	-	Mhun_1033	-	prephenate dehydrogenase
1003	 50.15	0	1165357..1166343	-	328	88602325	-	Mhun_1034	-	3-dehydroquinate synthase
1004	 47.93	0	1166350..1167123	-	257	88602326	-	Mhun_1035	-	fructose-bisphosphate aldolase
1005	 51.06	+1	1167120..1167920	-	266	88602327	-	Mhun_1036	-	fructose-bisphosphate aldolase
1006	 50.48	0	1168213..1168731	-	172	88602328	-	Mhun_1037	-	XRE family transcriptional regulator
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.