IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
845	 44.61	0	981544..982572	-	342	88602167	-	Mhun_0876	-	hypothetical protein
846	 45.00	0	982574..982873	-	99	88602168	-	Mhun_0877	-	AbrB family transcriptional regulator
847	 39.43	-1	983277..983555	+	92	88602169	-	Mhun_0878	-	hypothetical protein
848	 46.50	0	983536..984006	-	156	88602170	-	Mhun_0879	-	hypothetical protein
849	 43.14	0	984003..984155	-	50	88602171	-	Mhun_0880	-	hypothetical protein
850	 43.85	0	984488..986323	-	611	88602172	-	Mhun_0881	-	K+ potassium transporter
851	 46.64	0	986400..987902	-	500	88602173	-	Mhun_0882	-	Na+/solute symporter
852	 46.51	0	988049..988807	+	252	88602174	-	Mhun_0883	-	tetratricopeptide TPR_2
853	 42.18	0	988695..990050	-	451	88602175	-	Mhun_0884	-	DNA methylase N-4/N-6
854	 41.08	0	990238..992730	+	830	88602176	-	Mhun_0885	-	PAS/PAC sensor signal transduction histidine kinase
855	 40.82	0	992717..993130	+	137	88602177	-	Mhun_0886	-	response regulator receiver domain-containing protein
856	 43.17	0	993127..993675	+	182	88602178	-	Mhun_0887	-	CheB methylesterase
857	 40.05	-1	993741..994142	+	133	88602179	-	Mhun_0888	-	hypothetical protein
858	 44.52	0	994202..996364	+	720	88602180	-	Mhun_0889	-	polyphosphate kinase
859	 47.68	0	996389..996883	+	164	88602181	-	Mhun_0890	-	crossover junction endodeoxyribonuclease RuvC
860	 44.90	0	996880..997467	+	195	88602182	-	Mhun_0891	-	Holliday junction DNA helicase RuvA
861	 50.39	0	997474..998487	+	337	88602183	ruvB	Mhun_0892	-	Holliday junction DNA helicase B
862	 43.11	0	998532..999881	+	449	88602184	-	Mhun_0893	-	Allergen V5/Tpx-1 related
863	 45.03	0	999887..1001305	-	472	88602185	-	Mhun_0894	-	hypothetical protein
864	 38.26	-1	1001554..1002447	-	297	88602186	-	Mhun_0895	-	hypothetical protein
865	 42.00	0	1002434..1002883	-	149	88602187	-	Mhun_0896	-	GCN5-related N-acetyltransferase
866	 42.27	0	1003010..1004005	+	331	88602188	-	Mhun_0897	-	phosphate uptake regulator, PhoU
867	 38.83	-1	1004010..1004573	-	187	88602189	-	Mhun_0898	-	CheW protein
868	 44.56	0	1004628..1006301	-	557	88602190	-	Mhun_0899	-	hypothetical protein
869	 44.70	0	1006346..1006864	-	172	88602191	-	Mhun_0900	-	TPR repeat-containing protein
870	 47.34	0	1006940..1007653	-	237	88602192	-	Mhun_0901	-	hypothetical protein
871	 47.16	0	1007711..1008520	-	269	88602193	-	Mhun_0902	-	NAD(+) kinase
872	 46.98	0	1008539..1009315	-	258	88602194	-	Mhun_0903	-	bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase
873	 40.36	-1	1009399..1009782	+	127	88602195	-	Mhun_0904	-	translation initiation factor IF-5A
874	 35.95	-1	1009798..1011057	-	419	88602196	-	Mhun_0905	-	hypothetical protein
875	 43.16	0	1011064..1011714	-	216	88602197	-	Mhun_0906	-	hypothetical protein
876	 46.49	0	1011880..1012761	+	293	88602198	-	Mhun_0907	-	ATP-binding protein
877	 39.81	-1	1012758..1013066	+	102	88602199	-	Mhun_0908	-	hypothetical protein
878	 46.65	0	1013072..1014580	+	502	88602200	-	Mhun_0909	-	beta-lactamase-like
879	 45.55	0	1014669..1015241	+	190	88602201	-	Mhun_0910	-	sugar isomerase (SIS)
880	 44.75	0	1015247..1016350	+	367	88602202	-	Mhun_0911	-	aminotransferase, class I and II
881	 44.80	0	1016352..1017389	+	345	88602203	-	Mhun_0912	-	peptidase M42
882	 41.87	0	1017448..1018290	+	280	88602204	-	Mhun_0913	-	TPR repeat-containing protein
883	 43.96	0	1018294..1018839	-	181	88602205	-	Mhun_0914	-	Zn-dependent proteases-like
884	 48.37	0	1018857..1019255	+	132	88602206	-	Mhun_0915	-	hypothetical protein
885	 47.18	0	1019245..1020696	-	483	88602207	-	Mhun_0916	-	replication factor C large subunit
886	 46.01	0	1020836..1021837	+	333	88602208	-	Mhun_0917	-	AIR synthase related protein
887	 45.03	0	1021821..1022615	+	264	88602209	-	Mhun_0918	-	phosphotransacetylase-like
888	 47.83	0	1022783..1022989	+	68	88602210	-	Mhun_0919	-	transcription factor CBF/NF-Y histone
889	 44.85	0	1023080..1023661	-	193	88602211	-	Mhun_0920	-	imidazoleglycerol-phosphate dehydratase
890	 49.51	0	1023658..1024368	-	236	88602212	-	Mhun_0921	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
891	 43.96	0	1024373..1025275	-	300	88602213	hisG	Mhun_0922	-	ATP phosphoribosyltransferase
892	 43.72	0	1025275..1026477	-	400	88602214	-	Mhun_0923	-	S-adenosylmethionine synthetase
893	 39.93	-1	1026612..1027703	+	363	88602215	-	Mhun_0924	-	O-methyltransferase family protein
894	 40.25	-1	1027714..1028739	-	341	88602216	-	Mhun_0925	-	histidine kinase
895	 42.90	0	1028804..1029148	-	114	88602217	-	Mhun_0926	-	hypothetical protein
896	 44.05	0	1029196..1029699	-	167	88602218	-	Mhun_0927	-	putative ferredoxin-thioredoxin reductase,catalyticsubunit
897	 39.58	-1	1029696..1029935	-	79	88602219	-	Mhun_0928	-	glutaredoxin, putative
898	 45.30	0	1030050..1031144	-	364	88602220	-	Mhun_0929	-	histone deacetylase superfamily protein
899	 44.88	0	1031141..1032586	-	481	88602221	-	Mhun_0930	-	hydantoinase/oxoprolinase
900	 47.11	0	1033802..1034389	+	195	88602222	-	Mhun_0931	-	hypothetical protein
901	 43.35	0	1034386..1035453	+	355	88602223	-	Mhun_0932	-	GHMP kinase
902	 37.35	-1	1035503..1036249	+	248	88602224	-	Mhun_0933	-	hypothetical protein
903	 41.07	0	1036383..1036718	+	111	88602225	-	Mhun_0934	-	hydrogenase expression/synthesis, HypA
904	 46.49	0	1036719..1037714	+	331	88602226	-	Mhun_0935	-	hydrogenase expression/formation protein HypE
905	 39.65	-1	1037719..1038921	-	400	88602227	-	Mhun_0936	-	hypothetical protein
906	 44.55	0	1039116..1040105	+	329	88602228	-	Mhun_0937	-	hypothetical protein
907	 46.26	0	1040107..1041336	-	409	88602229	-	Mhun_0938	-	hypothetical protein
908	 44.78	0	1041360..1041953	-	197	88602230	-	Mhun_0939	-	5-deoxyadenosylcobinamide phosphate nucleotidyltransferase
909	 42.79	0	1041938..1042942	-	334	88602231	-	Mhun_0940	-	aminotransferase, class I and II
910	 52.63	+1	1043133..1043303	+	56	88602232	-	Mhun_0941	-	transcriptional regulator
911	 47.78	0	1043323..1044492	+	389	88602233	-	Mhun_0942	-	cell division protein FtsZ
912	 43.32	0	1045000..1045860	+	286	88602234	-	Mhun_0943	-	putative phosphoserine phosphatase
913	 43.34	0	1045920..1047038	+	372	88602235	-	Mhun_0944	-	hypothetical protein
914	 43.72	0	1047137..1048339	+	400	88602236	-	Mhun_0945	-	PKD
915	 45.11	0	1048398..1049594	+	398	88602237	-	Mhun_0946	-	hypothetical protein
916	 42.70	0	1049664..1051904	+	746	88602238	-	Mhun_0947	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
917	 41.48	0	1052108..1053481	+	457	88602239	-	Mhun_0948	-	hypothetical protein
918	 41.56	0	1053564..1056929	+	1121	88602240	-	Mhun_0949	-	TPR repeat-containing protein
919	 47.07	0	1056980..1057729	+	249	88602241	-	Mhun_0950	-	hypothetical protein
920	 40.79	0	1057935..1061933	+	1332	88602242	-	Mhun_0951	-	methyl-accepting chemotaxis sensory transducer
921	 42.57	0	1061936..1062487	-	183	88602243	-	Mhun_0952	-	CheB methylesterase
922	 38.97	-1	1062501..1062908	-	135	88602244	-	Mhun_0953	-	response regulator receiver domain-containing protein
923	 39.36	-1	1063106..1064449	+	447	88602245	-	Mhun_0954	-	nucleic acid binding, OB-fold, tRNA/helicase-type
924	 39.88	-1	1064507..1066414	+	635	88602246	-	Mhun_0955	-	tetratricopeptide TPR_2
925	 45.88	0	1066424..1067650	-	408	88602247	-	Mhun_0956	-	S-adenosyl-L-homocysteine hydrolase
926	 47.67	0	1067764..1068579	+	271	88602248	-	Mhun_0957	-	imidazoleglycerol phosphate synthase, cyclase subunit
927	 43.59	0	1068581..1069321	-	246	88602249	-	Mhun_0958	-	hypothetical protein
928	 39.15	-1	1069906..1070679	+	257	88602250	-	Mhun_0959	-	ATPases involved in chromosome partitioning-like
929	 39.44	-1	1070679..1073018	+	779	88602251	-	Mhun_0960	-	CheW protein
930	 37.56	-1	1073046..1073897	+	283	88602252	-	Mhun_0961	-	MCP methyltransferase, CheR-type
931	 42.24	0	1074291..1075514	+	407	88602253	-	Mhun_0962	-	hypothetical protein
932	 42.56	0	1075511..1076095	-	194	88602254	-	Mhun_0963	-	molybdopterin-guanine dinucleotide biosynthesis protein A
933	 45.09	0	1076092..1076559	-	155	88602255	-	Mhun_0964	-	methylated-DNA--protein-cysteine methyltransferase
934	 44.83	0	1076559..1078523	-	654	88602256	-	Mhun_0965	-	helicase c2
935	 36.76	-1	1078648..1079055	-	135	88602257	-	Mhun_0966	-	hemerythrin-like, metal-binding
936	 35.51	-2	1079156..1081318	+	720	88602258	-	Mhun_0967	-	periplasmic copper-binding
937	 45.01	0	1081539..1083071	+	510	88602259	-	Mhun_0968	-	amino acid permease-associated region
938	 37.72	-1	1083092..1084162	+	356	88602260	-	Mhun_0969	-	magnesium and cobalt transport protein CorA
939	 43.23	0	1084159..1088745	-	1528	88602261	-	Mhun_0970	-	PKD
940	 39.12	-1	1089248..1089610	+	120	88602262	-	Mhun_0971	-	hypothetical protein
941	 46.65	0	1089617..1091215	-	532	88602263	-	Mhun_0972	-	chaperonin Cpn60/TCP-1
942	 49.26	0	1091295..1091903	-	202	88602264	-	Mhun_0973	-	orotate phosphoribosyltransferase
943	 42.86	0	1091914..1092396	-	160	88602265	-	Mhun_0974	-	nucleic acid binding protein
944	 46.31	0	1092412..1093251	-	279	88602266	-	Mhun_0975	-	ribose-phosphate pyrophosphokinase
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.