IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
826	 42.87	0	965924..967045	+	373	88602148	-	Mhun_0855	-	cytochrome c biogenesis protein, transmembrane region
827	 36.38	-1	967075..967533	+	152	88602149	-	Mhun_0856	-	hypothetical protein
828	 41.47	0	967600..968103	-	167	88602150	-	Mhun_0857	-	hypothetical protein
829	 44.54	0	968140..968496	-	118	88602151	-	Mhun_0858	-	hypothetical protein
830	 49.34	0	968506..968961	-	151	88602152	-	Mhun_0859	-	hypothetical protein
831	 43.75	0	968961..969200	-	79	88602153	-	Mhun_0860	-	redox-active disulfide protein 2
832	 51.10	+1	969252..970022	-	256	88602154	-	Mhun_0861	-	hypothetical protein
833	 46.22	0	970390..971460	-	356	88602155	-	Mhun_0862	-	permease
834	 46.71	0	972907..973833	+	308	88602156	-	Mhun_0864	-	permease
835	 44.50	0	973896..974468	-	190	88602157	-	Mhun_0865	-	hypothetical protein
836	 38.89	-1	974527..975048	-	173	88602158	-	Mhun_0866	-	hypothetical protein
837	 37.61	-1	975056..975523	-	155	88602159	-	Mhun_0867	-	hypothetical protein
838	 44.49	0	975722..976438	-	238	88602160	-	Mhun_0868	-	putative cytochrome c biogenesis protein
839	 41.36	0	976447..976932	-	161	88602161	-	Mhun_0869	-	hypothetical protein
840	 45.90	0	977913..978620	+	235	88602162	-	Mhun_0871	-	hypothetical protein
841	 45.22	0	978723..979925	-	400	88602163	-	Mhun_0872	-	bile acid:sodium symporter
842	 39.75	-1	980081..980485	-	134	88602164	-	Mhun_0873	-	ArsR family transcriptional regulator
843	 42.59	0	980601..981032	+	143	88602165	-	Mhun_0874	-	protein tyrosine phosphatase
844	 44.01	0	981236..981544	-	102	88602166	-	Mhun_0875	-	4Fe-4S ferredoxin, iron-sulfur binding
845	 44.61	0	981544..982572	-	342	88602167	-	Mhun_0876	-	hypothetical protein
846	 45.00	0	982574..982873	-	99	88602168	-	Mhun_0877	-	AbrB family transcriptional regulator
847	 39.43	-1	983277..983555	+	92	88602169	-	Mhun_0878	-	hypothetical protein
848	 46.50	0	983536..984006	-	156	88602170	-	Mhun_0879	-	hypothetical protein
849	 43.14	0	984003..984155	-	50	88602171	-	Mhun_0880	-	hypothetical protein
850	 43.85	0	984488..986323	-	611	88602172	-	Mhun_0881	-	K+ potassium transporter
851	 46.64	0	986400..987902	-	500	88602173	-	Mhun_0882	-	Na+/solute symporter
852	 46.51	0	988049..988807	+	252	88602174	-	Mhun_0883	-	tetratricopeptide TPR_2
853	 42.18	0	988695..990050	-	451	88602175	-	Mhun_0884	-	DNA methylase N-4/N-6
854	 41.08	0	990238..992730	+	830	88602176	-	Mhun_0885	-	PAS/PAC sensor signal transduction histidine kinase
855	 40.82	0	992717..993130	+	137	88602177	-	Mhun_0886	-	response regulator receiver domain-containing protein
856	 43.17	0	993127..993675	+	182	88602178	-	Mhun_0887	-	CheB methylesterase
857	 40.05	-1	993741..994142	+	133	88602179	-	Mhun_0888	-	hypothetical protein
858	 44.52	0	994202..996364	+	720	88602180	-	Mhun_0889	-	polyphosphate kinase
859	 47.68	0	996389..996883	+	164	88602181	-	Mhun_0890	-	crossover junction endodeoxyribonuclease RuvC
860	 44.90	0	996880..997467	+	195	88602182	-	Mhun_0891	-	Holliday junction DNA helicase RuvA
861	 50.39	0	997474..998487	+	337	88602183	ruvB	Mhun_0892	-	Holliday junction DNA helicase B
862	 43.11	0	998532..999881	+	449	88602184	-	Mhun_0893	-	Allergen V5/Tpx-1 related
863	 45.03	0	999887..1001305	-	472	88602185	-	Mhun_0894	-	hypothetical protein
864	 38.26	-1	1001554..1002447	-	297	88602186	-	Mhun_0895	-	hypothetical protein
865	 42.00	0	1002434..1002883	-	149	88602187	-	Mhun_0896	-	GCN5-related N-acetyltransferase
866	 42.27	0	1003010..1004005	+	331	88602188	-	Mhun_0897	-	phosphate uptake regulator, PhoU
867	 38.83	-1	1004010..1004573	-	187	88602189	-	Mhun_0898	-	CheW protein
868	 44.56	0	1004628..1006301	-	557	88602190	-	Mhun_0899	-	hypothetical protein
869	 44.70	0	1006346..1006864	-	172	88602191	-	Mhun_0900	-	TPR repeat-containing protein
870	 47.34	0	1006940..1007653	-	237	88602192	-	Mhun_0901	-	hypothetical protein
871	 47.16	0	1007711..1008520	-	269	88602193	-	Mhun_0902	-	NAD(+) kinase
872	 46.98	0	1008539..1009315	-	258	88602194	-	Mhun_0903	-	bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase
873	 40.36	-1	1009399..1009782	+	127	88602195	-	Mhun_0904	-	translation initiation factor IF-5A
874	 35.95	-1	1009798..1011057	-	419	88602196	-	Mhun_0905	-	hypothetical protein
875	 43.16	0	1011064..1011714	-	216	88602197	-	Mhun_0906	-	hypothetical protein
876	 46.49	0	1011880..1012761	+	293	88602198	-	Mhun_0907	-	ATP-binding protein
877	 39.81	-1	1012758..1013066	+	102	88602199	-	Mhun_0908	-	hypothetical protein
878	 46.65	0	1013072..1014580	+	502	88602200	-	Mhun_0909	-	beta-lactamase-like
879	 45.55	0	1014669..1015241	+	190	88602201	-	Mhun_0910	-	sugar isomerase (SIS)
880	 44.75	0	1015247..1016350	+	367	88602202	-	Mhun_0911	-	aminotransferase, class I and II
881	 44.80	0	1016352..1017389	+	345	88602203	-	Mhun_0912	-	peptidase M42
882	 41.87	0	1017448..1018290	+	280	88602204	-	Mhun_0913	-	TPR repeat-containing protein
883	 43.96	0	1018294..1018839	-	181	88602205	-	Mhun_0914	-	Zn-dependent proteases-like
884	 48.37	0	1018857..1019255	+	132	88602206	-	Mhun_0915	-	hypothetical protein
885	 47.18	0	1019245..1020696	-	483	88602207	-	Mhun_0916	-	replication factor C large subunit
886	 46.01	0	1020836..1021837	+	333	88602208	-	Mhun_0917	-	AIR synthase related protein
887	 45.03	0	1021821..1022615	+	264	88602209	-	Mhun_0918	-	phosphotransacetylase-like
888	 47.83	0	1022783..1022989	+	68	88602210	-	Mhun_0919	-	transcription factor CBF/NF-Y histone
889	 44.85	0	1023080..1023661	-	193	88602211	-	Mhun_0920	-	imidazoleglycerol-phosphate dehydratase
890	 49.51	0	1023658..1024368	-	236	88602212	-	Mhun_0921	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
891	 43.96	0	1024373..1025275	-	300	88602213	hisG	Mhun_0922	-	ATP phosphoribosyltransferase
892	 43.72	0	1025275..1026477	-	400	88602214	-	Mhun_0923	-	S-adenosylmethionine synthetase
893	 39.93	-1	1026612..1027703	+	363	88602215	-	Mhun_0924	-	O-methyltransferase family protein
894	 40.25	-1	1027714..1028739	-	341	88602216	-	Mhun_0925	-	histidine kinase
895	 42.90	0	1028804..1029148	-	114	88602217	-	Mhun_0926	-	hypothetical protein
896	 44.05	0	1029196..1029699	-	167	88602218	-	Mhun_0927	-	putative ferredoxin-thioredoxin reductase,catalyticsubunit
897	 39.58	-1	1029696..1029935	-	79	88602219	-	Mhun_0928	-	glutaredoxin, putative
898	 45.30	0	1030050..1031144	-	364	88602220	-	Mhun_0929	-	histone deacetylase superfamily protein
899	 44.88	0	1031141..1032586	-	481	88602221	-	Mhun_0930	-	hydantoinase/oxoprolinase
900	 47.11	0	1033802..1034389	+	195	88602222	-	Mhun_0931	-	hypothetical protein
901	 43.35	0	1034386..1035453	+	355	88602223	-	Mhun_0932	-	GHMP kinase
902	 37.35	-1	1035503..1036249	+	248	88602224	-	Mhun_0933	-	hypothetical protein
903	 41.07	0	1036383..1036718	+	111	88602225	-	Mhun_0934	-	hydrogenase expression/synthesis, HypA
904	 46.49	0	1036719..1037714	+	331	88602226	-	Mhun_0935	-	hydrogenase expression/formation protein HypE
905	 39.65	-1	1037719..1038921	-	400	88602227	-	Mhun_0936	-	hypothetical protein
906	 44.55	0	1039116..1040105	+	329	88602228	-	Mhun_0937	-	hypothetical protein
907	 46.26	0	1040107..1041336	-	409	88602229	-	Mhun_0938	-	hypothetical protein
908	 44.78	0	1041360..1041953	-	197	88602230	-	Mhun_0939	-	5-deoxyadenosylcobinamide phosphate nucleotidyltransferase
909	 42.79	0	1041938..1042942	-	334	88602231	-	Mhun_0940	-	aminotransferase, class I and II
910	 52.63	+1	1043133..1043303	+	56	88602232	-	Mhun_0941	-	transcriptional regulator
911	 47.78	0	1043323..1044492	+	389	88602233	-	Mhun_0942	-	cell division protein FtsZ
912	 43.32	0	1045000..1045860	+	286	88602234	-	Mhun_0943	-	putative phosphoserine phosphatase
913	 43.34	0	1045920..1047038	+	372	88602235	-	Mhun_0944	-	hypothetical protein
914	 43.72	0	1047137..1048339	+	400	88602236	-	Mhun_0945	-	PKD
915	 45.11	0	1048398..1049594	+	398	88602237	-	Mhun_0946	-	hypothetical protein
916	 42.70	0	1049664..1051904	+	746	88602238	-	Mhun_0947	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
917	 41.48	0	1052108..1053481	+	457	88602239	-	Mhun_0948	-	hypothetical protein
918	 41.56	0	1053564..1056929	+	1121	88602240	-	Mhun_0949	-	TPR repeat-containing protein
919	 47.07	0	1056980..1057729	+	249	88602241	-	Mhun_0950	-	hypothetical protein
920	 40.79	0	1057935..1061933	+	1332	88602242	-	Mhun_0951	-	methyl-accepting chemotaxis sensory transducer
921	 42.57	0	1061936..1062487	-	183	88602243	-	Mhun_0952	-	CheB methylesterase
922	 38.97	-1	1062501..1062908	-	135	88602244	-	Mhun_0953	-	response regulator receiver domain-containing protein
923	 39.36	-1	1063106..1064449	+	447	88602245	-	Mhun_0954	-	nucleic acid binding, OB-fold, tRNA/helicase-type
924	 39.88	-1	1064507..1066414	+	635	88602246	-	Mhun_0955	-	tetratricopeptide TPR_2
925	 45.88	0	1066424..1067650	-	408	88602247	-	Mhun_0956	-	S-adenosyl-L-homocysteine hydrolase
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.