IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
36	 48.35	0	55025..57775	+	916	88601358	alaS	Mhun_0039	-	alanyl-tRNA synthetase
37	 48.74	0	57768..58442	+	224	88601359	-	Mhun_0040	-	putative transcriptional regulator
38	 43.23	0	58695..59573	-	292	88601360	-	Mhun_0041	-	hypothetical protein
39	 45.56	0	59600..59959	-	119	88601361	-	Mhun_0042	-	hypothetical protein
40	 42.28	0	60009..60746	+	245	88601362	-	Mhun_0043	-	hypothetical protein
41	 44.51	0	60775..61302	-	175	88601363	-	Mhun_0044	-	Ferritin and Dps
42	 49.25	0	61557..63146	+	529	88601364	-	Mhun_0045	-	ferredoxin-dependent glutamate synthase
43	 43.78	0	63530..63730	+	66	88601365	-	Mhun_0046	-	hypothetical protein
44	 45.70	0	63922..65118	+	398	88601366	-	Mhun_0047	-	hypothetical protein
45	 45.58	0	65248..66423	-	391	88601367	-	Mhun_0048	-	hypothetical protein
46	 43.65	0	66843..67094	+	83	88601368	rpoH	Mhun_0049	-	DNA-directed RNA polymerase subunit H
47	 50.10	0	67113..68669	+	518	88601369	-	Mhun_0050	-	DNA-directed RNA polymerase subunit beta''
48	 48.43	0	68669..70489	+	606	88601370	-	Mhun_0051	-	DNA-directed RNA polymerase subunit B'
49	 51.41	+1	70504..73164	+	886	88601371	-	Mhun_0052	-	DNA-directed RNA polymerase subunit alpha
50	 48.17	0	73164..75125	+	653	88601372	-	Mhun_0053	-	DNA-directed RNA polymerase, subunit A''
51	 48.61	0	75137..75424	+	95	88601373	-	Mhun_0054	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
52	 44.99	0	75434..75862	+	142	88601374	-	Mhun_0055	-	NusA family protein
53	 45.29	0	75926..76711	+	261	88601375	-	Mhun_0056	-	hypothetical protein
54	 44.19	0	76877..77272	-	131	88601376	-	Mhun_0057	-	hypothetical protein
55	 46.80	0	77278..78012	-	244	88601377	-	Mhun_0058	-	hypothetical protein
56	 46.19	0	78113..78571	+	152	88601378	-	Mhun_0059	-	hypothetical protein
57	 46.35	0	78586..80706	+	706	88601379	-	Mhun_0060	-	serine phosphatase
58	 43.46	0	80711..82429	-	572	88601380	-	Mhun_0061	-	hypothetical protein
59	 44.16	0	82520..82870	+	116	88601381	-	Mhun_0062	-	anti-sigma-factor antagonist domain-containing protein
60	 43.03	0	82894..83316	+	140	88601382	-	Mhun_0063	-	putative anti-sigma regulatory factor (serine/threonine protein kinase)
61	 48.20	0	83363..84169	+	268	88601383	-	Mhun_0064	-	hypothetical protein
62	 46.43	0	84323..84826	+	167	88601384	-	Mhun_0065	-	hypothetical protein
63	 45.91	0	84949..85449	+	166	88601385	-	Mhun_0066	-	hypothetical protein
64	 45.57	0	85562..86035	-	157	88601386	-	Mhun_0067	-	superfamily II helicase-like protein
65	 43.80	0	86233..87780	-	515	88601387	-	Mhun_0068	-	hypothetical protein
66	 45.23	0	88206..88844	-	212	88601388	-	Mhun_0069	-	hypothetical protein
67	 49.74	0	88986..90149	+	387	88601389	-	Mhun_0070	-	thiamine biosynthesis protein
68	 47.72	0	90155..91336	-	393	88601390	-	Mhun_0071	-	Sep-tRNA:Cys-tRNA synthetase
69	 34.82	-2	91462..93072	-	536	88601391	-	Mhun_0072	-	transposase, IS4
70	 49.04	0	93392..94333	-	313	88601392	-	Mhun_0073	-	hypothetical protein
71	 50.74	0	94371..95858	+	495	88601393	-	Mhun_0074	-	hypothetical protein
72	 50.99	+1	95860..96720	-	286	88601394	-	Mhun_0075	-	formate/nitrite transporter
73	 48.71	0	96787..98529	-	580	88601395	-	Mhun_0076	-	hypothetical protein
74	 51.44	+1	98547..99446	-	299	88601396	-	Mhun_0077	-	PfkB
75	 45.43	0	99443..99781	-	112	88601397	-	Mhun_0078	-	hypothetical protein
76	 49.62	0	99805..100332	-	175	88601398	-	Mhun_0079	-	nitroreductase
77	 42.86	0	100319..100675	-	118	88601399	-	Mhun_0080	-	hypothetical protein
78	 56.05	+2	100865..101203	-	112	88601400	-	Mhun_0081	-	hypothetical protein
79	 50.46	0	101277..103121	-	614	88601401	-	Mhun_0082	-	glutamyl-tRNA(Gln) amidotransferase subunit E
80	 51.50	+1	103118..104350	-	410	88601402	-	Mhun_0083	-	glutamyl-tRNA(Gln) amidotransferase subunit D
81	 51.28	+1	104347..105828	-	493	88601403	-	Mhun_0084	-	argininosuccinate lyase
82	 49.48	0	105995..107047	+	350	88601404	-	Mhun_0085	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
83	 49.75	0	107137..107922	+	261	88601405	-	Mhun_0086	-	binding-protein-dependent transport systems inner membrane component
84	 48.11	0	107924..108715	+	263	88601406	-	Mhun_0087	-	ABC transporter related
85	 49.71	0	108746..109258	+	170	88601407	rpl10e	Mhun_0088	-	50S ribosomal protein L10e
86	 50.78	0	109328..110164	+	278	88601408	-	Mhun_0089	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
87	 53.41	+1	110161..110718	+	185	88601409	-	Mhun_0090	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
88	 52.75	+1	110715..110987	+	90	88601410	-	Mhun_0091	-	4Fe-4S ferredoxin, iron-sulfur binding
89	 51.23	+1	111001..112095	+	364	88601411	-	Mhun_0092	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
90	 49.37	0	112092..112883	+	263	88601412	-	Mhun_0093	-	thiamine pyrophosphate enzyme-like TPP-binding
91	 51.48	+1	112873..113412	+	179	88601413	-	Mhun_0094	-	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate
92	 49.91	0	113409..114488	+	359	88601414	-	Mhun_0095	-	succinyl-CoA synthetase, beta subunit
93	 55.13	+1	114485..115351	+	288	88601415	-	Mhun_0096	-	succinyl-CoA synthetase, alpha subunit
94	 51.41	+1	115352..116341	+	329	88601416	-	Mhun_0097	-	hypothetical protein
95	 48.71	0	116348..117082	+	244	88601417	-	Mhun_0098	-	hypothetical protein
96	 44.54	0	117084..117815	-	243	88601418	-	Mhun_0099	-	TPR repeat-containing protein
97	 49.78	0	118095..118988	+	297	88601419	-	Mhun_0100	-	hypothetical protein
98	 40.99	0	118997..119479	+	160	88601420	-	Mhun_0101	-	hypothetical protein
99	 32.92	-2	119487..119969	+	160	88601421	-	Mhun_0102	-	hypothetical protein
100	 45.78	0	120066..120836	+	256	88601422	-	Mhun_0103	-	flagellar accessory protein FlaH
101	 47.45	0	120839..122701	+	620	88601423	-	Mhun_0104	-	type II secretion system protein E
102	 44.98	0	122705..124309	+	534	88601424	-	Mhun_0105	-	flagellar assembly protein J
103	 45.90	0	124313..125410	+	365	88601425	-	Mhun_0106	-	hypothetical protein
104	 47.45	0	125441..126262	+	273	88601426	-	Mhun_0107	-	hypothetical protein
105	 46.28	0	126329..126691	+	120	88601427	-	Mhun_0108	-	response regulator receiver domain-containing protein
106	 46.55	0	126695..127723	+	342	88601428	-	Mhun_0109	-	response regulator receiver (CheY-like) modulated CheB methylesterase
107	 47.77	0	127727..130759	+	1010	88601429	-	Mhun_0110	-	CheA signal transduction histidine kinases
108	 47.11	0	130765..131265	+	166	88601430	-	Mhun_0111	-	chemoreceptor glutamine deamidase CheD
109	 46.44	0	131272..132912	-	546	88601431	-	Mhun_0112	-	CheC, inhibitor of MCP methylation
110	 49.08	0	133031..133576	-	181	88601432	-	Mhun_0113	-	pyruvoyl-dependent arginine decarboxylase
111	 48.77	0	133761..134816	+	351	88601433	-	Mhun_0114	-	carbamoyl-phosphate synthase, small subunit
112	 48.53	0	134816..137986	+	1056	88601434	carB	Mhun_0115	-	carbamoyl phosphate synthase large subunit
113	 49.41	0	138067..139254	+	395	88601435	-	Mhun_0116	-	argininosuccinate synthase
114	 44.11	0	139845..140642	-	265	88601436	-	Mhun_0118	-	putative PAS/PAC sensor protein
115	 46.49	0	140733..141431	-	232	88601437	-	Mhun_0119	-	glycosyl transferase family protein
116	 47.03	0	141428..142405	-	325	88601438	-	Mhun_0120	-	glycosyl transferase, group 1
117	 46.00	0	142402..143712	-	436	88601439	-	Mhun_0121	-	amine oxidase
118	 42.72	0	143862..144500	-	212	88601440	-	Mhun_0122	-	beta-lactamase-like
119	 48.17	0	144504..145103	-	199	88601441	-	Mhun_0123	-	beta-lactamase-like
120	 46.73	0	145072..145713	-	213	88601442	-	Mhun_0124	-	MCP methyltransferase, CheR-type
121	 50.52	0	145762..146715	-	317	88601443	-	Mhun_0125	-	putative RNA methylase
122	 46.83	0	146744..147106	-	120	88601444	-	Mhun_0126	-	response regulator receiver domain-containing protein
123	 50.13	0	147175..148311	-	378	88601445	-	Mhun_0127	-	chaperone DnaJ
124	 47.30	0	148321..150153	-	610	88601446	-	Mhun_0128	-	chaperone DnaK
125	 49.09	0	150178..150729	-	183	88601447	-	Mhun_0129	-	GrpE protein
126	 44.00	0	151227..153167	-	646	88601448	-	Mhun_0130	-	peptidase M3A and M3B, thimet/oligopeptidase F
127	 45.45	0	153254..153748	+	164	88601449	-	Mhun_0131	-	Ferritin and Dps
128	 39.95	-1	154293..154700	-	135	88601450	-	Mhun_0133	-	DNA polymerase, beta-like region
129	 48.59	0	154858..156096	+	412	88601451	-	Mhun_0134	-	hypothetical protein
130	 48.37	0	156441..156899	-	152	88601452	-	Mhun_0135	-	YbhB and YbcL
131	 48.44	0	156913..157647	-	244	88601453	-	Mhun_0136	-	hypothetical protein
132	 45.83	0	157653..158036	-	127	88601454	-	Mhun_0137	-	4Fe-4S ferredoxin, iron-sulfur binding
133	 49.54	0	158033..159544	-	503	88601455	-	Mhun_0138	-	hypothetical protein
134	 51.97	+1	159640..161292	-	550	88601456	-	Mhun_0139	-	dihydroxy-acid dehydratase
135	 46.63	0	161386..161889	+	167	88601457	-	Mhun_0140	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.