IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
751	 45.77	0	896007..897059	+	350	88602073	-	Mhun_0780	-	glutamine amidotransferase, class-II
752	 46.36	0	897056..898567	+	503	88602074	-	Mhun_0781	-	glutamate synthase (NADPH)
753	 45.75	0	898569..899309	+	246	88602075	-	Mhun_0782	-	glutamate synthase, alpha subunit-like
754	 45.07	0	899314..900327	+	337	88602076	-	Mhun_0783	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
755	 44.67	0	900397..901410	+	337	88602077	-	Mhun_0784	-	radical SAM family protein
756	 44.40	0	901407..902183	+	258	88602078	-	Mhun_0785	-	undecaprenyl diphosphate synthase
757	 39.71	-1	902186..902812	-	208	88602079	-	Mhun_0786	-	di-trans-poly-cis-decaprenylcistransferase
758	 39.57	-1	903046..903750	+	234	88602080	-	Mhun_0787	-	hypothetical protein
759	 43.48	0	903756..904514	+	252	88602081	-	Mhun_0788	-	diphthine synthase
760	 38.89	-1	904501..905076	+	191	88602082	-	Mhun_0789	-	hypothetical protein
761	 40.22	-1	905073..905348	-	91	88602083	-	Mhun_0790	-	phosphoribosyl-ATP pyrophosphohydrolase
762	 38.29	-1	905363..905806	-	147	88602084	-	Mhun_0791	-	NusA family protein
763	 43.55	0	906067..906477	-	136	88602085	-	Mhun_0792	-	hypothetical protein
764	 44.60	0	906664..907506	-	280	88602086	-	Mhun_0793	-	nitrogenase
765	 40.95	0	907547..908518	-	323	88602087	-	Mhun_0794	-	phosphoribulokinase/uridine kinase
766	 43.43	0	908567..909754	-	395	88602088	-	Mhun_0795	-	beta-lactamase-like
767	 38.16	-1	909861..910544	+	227	88602089	-	Mhun_0796	-	hypothetical protein
768	 47.42	0	911011..912423	+	470	88602090	-	Mhun_0797	-	hypothetical protein
769	 41.15	0	912482..912724	+	80	88602091	-	Mhun_0798	-	hypothetical protein
770	 44.88	0	912702..913307	-	201	88602092	-	Mhun_0799	-	hypothetical protein
771	 40.21	-1	913353..914108	+	251	88602093	-	Mhun_0800	-	glutamine amidotransferase class-I
772	 44.77	0	914166..914681	+	171	88602094	-	Mhun_0801	-	protein of unknown function DUF395, YeeE/YedE
773	 44.98	0	914691..915248	+	185	88602095	-	Mhun_0802	-	YeeE/YedE family protein
774	 45.99	0	915280..915603	+	107	88602096	-	Mhun_0803	-	hypothetical protein
775	 45.37	0	915743..916066	-	107	88602097	-	Mhun_0804	-	transcription factor S
776	 44.36	0	916176..917009	+	277	88602098	-	Mhun_0805	-	cytochrome oxidase, subunit I, putative
777	 42.65	0	916957..917589	-	210	88602099	-	Mhun_0806	-	CDP-alcohol phosphatidyltransferase
778	 45.67	0	917747..918427	+	226	88602100	-	Mhun_0807	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
779	 45.71	0	918441..919709	-	422	88602101	-	Mhun_0808	-	pseudouridylate synthase
780	 43.25	0	919706..920068	-	120	88602102	-	Mhun_0809	-	peptidyl-tRNA hydrolase
781	 48.40	0	920154..921308	+	384	88602103	-	Mhun_0810	-	geranylgeranyl reductase
782	 44.85	0	921350..921679	+	109	88602104	-	Mhun_0811	-	hypothetical protein
783	 41.35	0	921685..923043	-	452	88602105	-	Mhun_0812	-	tetratricopeptide TPR_2
784	 42.81	0	923129..924025	-	298	88602106	-	Mhun_0813	-	radical SAM family protein
785	 42.57	0	924044..924931	-	295	88602107	-	Mhun_0814	-	hypothetical protein
786	 42.75	0	924988..925380	+	130	88602108	-	Mhun_0815	-	thioredoxin-related
787	 44.44	0	925382..925876	-	164	88602109	-	Mhun_0816	-	hypothetical protein
788	 46.22	0	926312..928717	-	801	88602110	-	Mhun_0817	-	AAA family ATPase, CDC48 subfamily protein
789	 44.16	0	928707..929288	-	193	88602111	-	Mhun_0818	-	5-formyltetrahydrofolate cyclo-ligase
790	 40.49	-1	929296..930357	-	353	88602112	-	Mhun_0819	-	hypothetical protein
791	 40.23	-1	930501..930761	+	86	88602113	-	Mhun_0820	-	hypothetical protein
792	 41.44	0	930769..932310	-	513	88602114	-	Mhun_0821	-	hypothetical protein
793	 39.70	-1	932331..933131	-	266	88602115	-	Mhun_0822	-	hypothetical protein
794	 39.55	-1	933393..933923	+	176	88602116	-	Mhun_0823	-	hypothetical protein
795	 47.20	0	933933..935273	-	446	88602117	-	Mhun_0824	-	adenylosuccinate lyase
796	 44.35	0	935376..935729	+	117	88602118	-	Mhun_0825	-	hypothetical protein
797	 48.86	0	935701..936531	+	276	88602119	-	Mhun_0826	-	TatD-related deoxyribonuclease
798	 44.90	0	936577..936870	+	97	88602120	-	Mhun_0827	-	hypothetical protein
799	 48.17	0	936884..937921	+	345	88602121	-	Mhun_0828	-	hypothetical protein
800	 46.37	0	937934..938800	+	288	88602122	-	Mhun_0829	-	protein of unknown function Met10
801	 47.76	0	938797..939933	+	378	88602123	-	Mhun_0830	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
802	 46.78	0	939936..940805	+	289	88602124	-	Mhun_0831	-	GHMP kinase
803	 48.50	0	940802..941533	+	243	88602125	-	Mhun_0832	-	hypothetical protein
804	 47.49	0	941520..942515	+	331	88602126	-	Mhun_0833	-	replication factor C small subunit 2
805	 45.38	0	942545..943258	+	237	88602127	-	Mhun_0834	-	UbiE/COQ5 methyltransferase
806	 40.14	-1	943280..943705	-	141	88602128	-	Mhun_0835	-	hypothetical protein
807	 45.57	0	943883..945337	+	484	88602129	-	Mhun_0836	-	Alpha-amylase
808	 47.54	0	945941..947080	+	379	88602130	-	Mhun_0837	-	glycosyl transferase, group 1
809	 45.18	0	947790..948287	+	165	88602131	-	Mhun_0838	-	hypothetical protein
810	 48.48	0	948289..950256	+	655	88602132	-	Mhun_0839	-	DNA polymerase I
811	 40.27	-1	950434..951024	+	196	88602133	-	Mhun_0840	-	response regulator receiver domain-containing protein
812	 45.00	0	951028..952227	+	399	88602134	-	Mhun_0841	-	sodium/hydrogen exchanger
813	 45.18	0	952232..952687	-	151	88602135	-	Mhun_0842	-	CopG family transcriptional regulator
814	 48.48	0	952868..953560	-	230	88602136	-	Mhun_0843	-	methyltransferase type 11
815	 46.70	0	953544..954650	-	368	88602137	-	Mhun_0844	-	major facilitator transporter
816	 46.72	0	954656..956545	-	629	88602138	-	Mhun_0845	-	beta-lactamase-like
817	 48.41	0	956586..957215	-	209	88602139	-	Mhun_0846	-	proteasome endopeptidase complex
818	 46.30	0	957307..958170	-	287	88602140	-	Mhun_0847	-	signal transduction protein
819	 44.06	0	958170..958598	-	142	88602141	-	Mhun_0848	-	hypothetical protein
820	 49.03	0	958641..959672	-	343	88602142	-	Mhun_0849	-	amidohydrolase
821	 49.08	0	959890..960543	-	217	88602143	-	Mhun_0850	-	hypothetical protein
822	 49.14	0	961926..962678	-	250	88602144	-	Mhun_0851	-	MIP family channel protein
823	 46.67	0	962681..962890	-	69	88602145	-	Mhun_0852	-	hypothetical protein
824	 46.40	0	962909..964408	-	499	88602146	-	Mhun_0853	-	hypothetical protein
825	 45.32	0	964958..965641	+	227	88602147	-	Mhun_0854	-	NADP oxidoreductase, coenzyme F420-dependent
826	 42.87	0	965924..967045	+	373	88602148	-	Mhun_0855	-	cytochrome c biogenesis protein, transmembrane region
827	 36.38	-1	967075..967533	+	152	88602149	-	Mhun_0856	-	hypothetical protein
828	 41.47	0	967600..968103	-	167	88602150	-	Mhun_0857	-	hypothetical protein
829	 44.54	0	968140..968496	-	118	88602151	-	Mhun_0858	-	hypothetical protein
830	 49.34	0	968506..968961	-	151	88602152	-	Mhun_0859	-	hypothetical protein
831	 43.75	0	968961..969200	-	79	88602153	-	Mhun_0860	-	redox-active disulfide protein 2
832	 51.10	+1	969252..970022	-	256	88602154	-	Mhun_0861	-	hypothetical protein
833	 46.22	0	970390..971460	-	356	88602155	-	Mhun_0862	-	permease
834	 46.71	0	972907..973833	+	308	88602156	-	Mhun_0864	-	permease
835	 44.50	0	973896..974468	-	190	88602157	-	Mhun_0865	-	hypothetical protein
836	 38.89	-1	974527..975048	-	173	88602158	-	Mhun_0866	-	hypothetical protein
837	 37.61	-1	975056..975523	-	155	88602159	-	Mhun_0867	-	hypothetical protein
838	 44.49	0	975722..976438	-	238	88602160	-	Mhun_0868	-	putative cytochrome c biogenesis protein
839	 41.36	0	976447..976932	-	161	88602161	-	Mhun_0869	-	hypothetical protein
840	 45.90	0	977913..978620	+	235	88602162	-	Mhun_0871	-	hypothetical protein
841	 45.22	0	978723..979925	-	400	88602163	-	Mhun_0872	-	bile acid:sodium symporter
842	 39.75	-1	980081..980485	-	134	88602164	-	Mhun_0873	-	ArsR family transcriptional regulator
843	 42.59	0	980601..981032	+	143	88602165	-	Mhun_0874	-	protein tyrosine phosphatase
844	 44.01	0	981236..981544	-	102	88602166	-	Mhun_0875	-	4Fe-4S ferredoxin, iron-sulfur binding
845	 44.61	0	981544..982572	-	342	88602167	-	Mhun_0876	-	hypothetical protein
846	 45.00	0	982574..982873	-	99	88602168	-	Mhun_0877	-	AbrB family transcriptional regulator
847	 39.43	-1	983277..983555	+	92	88602169	-	Mhun_0878	-	hypothetical protein
848	 46.50	0	983536..984006	-	156	88602170	-	Mhun_0879	-	hypothetical protein
849	 43.14	0	984003..984155	-	50	88602171	-	Mhun_0880	-	hypothetical protein
850	 43.85	0	984488..986323	-	611	88602172	-	Mhun_0881	-	K+ potassium transporter
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.