IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
712	 48.84	0	857053..857826	-	257	88602034	-	Mhun_0740	-	hypothetical protein
713	 46.43	0	857826..858413	-	195	88602035	-	Mhun_0741	-	hypothetical protein
714	 44.79	0	858417..858896	-	159	88602036	-	Mhun_0742	-	hypothetical protein
715	 47.46	0	858896..859978	-	360	88602037	-	Mhun_0743	-	hypothetical protein
716	 43.18	0	859983..860642	-	219	88602038	-	Mhun_0744	-	hypothetical protein
717	 42.31	0	860642..863113	-	823	88602039	-	Mhun_0745	-	metal dependent phosphohydrolase
718	 39.04	-1	863115..863903	-	262	88602040	-	Mhun_0746	-	hypothetical protein
719	 38.23	-1	864081..864713	-	210	88602041	-	Mhun_0747	-	hypothetical protein
720	 35.24	-2	865383..865697	+	104	88602042	-	Mhun_0748	-	excisionase/Xis, DNA-binding
721	 43.75	0	865779..868754	-	991	88602043	-	Mhun_0749	-	TPR repeat-containing protein
722	 37.78	-1	869313..869582	-	89	88602044	-	Mhun_0750	-	hypothetical protein
723	 36.92	-1	869738..870016	-	92	88602045	-	Mhun_0751	-	plasmid stabilization system protein
724	 38.60	-1	870016..870243	-	75	88602046	-	Mhun_0752	-	hypothetical protein
725	 35.42	-2	870773..871060	-	95	88602047	-	Mhun_0754	-	hypothetical protein
726	 41.05	0	871057..871911	-	284	88602048	-	Mhun_0755	-	hypothetical protein
727	 38.10	-1	872273..872902	-	209	88602049	-	Mhun_0756	-	integral membrane protein-like
728	 42.42	0	873074..873304	+	76	88602050	-	Mhun_0757	-	hypothetical protein
729	 46.36	0	873305..874018	-	237	88602051	-	Mhun_0758	-	ABC transporter related
730	 45.61	0	874021..875226	-	401	88602052	-	Mhun_0759	-	hypothetical protein
731	 45.02	0	875226..876509	-	427	88602053	-	Mhun_0760	-	S-layer-like domain-containing protein
732	 45.72	0	876577..877335	-	252	88602054	-	Mhun_0761	-	hypothetical protein
733	 43.99	0	877332..877913	-	193	88602055	-	Mhun_0762	-	hypothetical protein
734	 44.65	0	877900..878226	-	108	88602056	-	Mhun_0763	-	PadR-like family transcriptional regulator
735	 41.86	0	878479..879135	+	218	88602057	-	Mhun_0764	-	hypothetical protein
736	 41.67	0	879195..879686	+	163	88602058	-	Mhun_0765	-	hypothetical protein
737	 35.20	-2	879701..880075	-	124	88602059	-	Mhun_0766	-	DNA polymerase, beta-like region
738	 37.86	-1	880057..880476	-	139	88602060	-	Mhun_0767	-	hypothetical protein
739	 42.25	0	880525..882768	-	747	88602061	-	Mhun_0768	-	hydrophobe/amphiphile efflux-3 HAE3
740	 44.89	0	882790..884139	-	449	88602062	-	Mhun_0769	-	S-layer-like domain-containing protein
741	 42.27	0	884291..885610	+	439	88602063	-	Mhun_0770	-	putative PAS/PAC sensor protein
742	 43.16	0	885827..887017	+	396	88602064	-	Mhun_0771	-	ammonium transporter
743	 39.29	-1	887056..888063	-	335	88602065	-	Mhun_0772	-	hypothetical protein
744	 37.07	-1	888144..888518	-	124	88602066	-	Mhun_0773	-	desulfoferrodoxin ferrous iron-binding domain-containing protein
745	 38.85	-1	888900..890459	-	519	88602067	-	Mhun_0774	-	tetratricopeptide TPR_2
746	 33.65	-2	890536..891171	-	211	88602068	-	Mhun_0775	-	hypothetical protein
747	 33.94	-2	891168..891821	-	217	88602069	-	Mhun_0776	-	hypothetical protein
748	 37.73	-1	892639..893025	+	128	88602070	-	Mhun_0777	-	hypothetical protein
749	 39.65	-1	893315..894232	-	305	88602071	-	Mhun_0778	-	glycosyl transferase family protein
750	 42.57	0	894365..895696	-	443	88602072	-	Mhun_0779	-	glutamine synthetase, type I
751	 45.77	0	896007..897059	+	350	88602073	-	Mhun_0780	-	glutamine amidotransferase, class-II
752	 46.36	0	897056..898567	+	503	88602074	-	Mhun_0781	-	glutamate synthase (NADPH)
753	 45.75	0	898569..899309	+	246	88602075	-	Mhun_0782	-	glutamate synthase, alpha subunit-like
754	 45.07	0	899314..900327	+	337	88602076	-	Mhun_0783	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
755	 44.67	0	900397..901410	+	337	88602077	-	Mhun_0784	-	radical SAM family protein
756	 44.40	0	901407..902183	+	258	88602078	-	Mhun_0785	-	undecaprenyl diphosphate synthase
757	 39.71	-1	902186..902812	-	208	88602079	-	Mhun_0786	-	di-trans-poly-cis-decaprenylcistransferase
758	 39.57	-1	903046..903750	+	234	88602080	-	Mhun_0787	-	hypothetical protein
759	 43.48	0	903756..904514	+	252	88602081	-	Mhun_0788	-	diphthine synthase
760	 38.89	-1	904501..905076	+	191	88602082	-	Mhun_0789	-	hypothetical protein
761	 40.22	-1	905073..905348	-	91	88602083	-	Mhun_0790	-	phosphoribosyl-ATP pyrophosphohydrolase
762	 38.29	-1	905363..905806	-	147	88602084	-	Mhun_0791	-	NusA family protein
763	 43.55	0	906067..906477	-	136	88602085	-	Mhun_0792	-	hypothetical protein
764	 44.60	0	906664..907506	-	280	88602086	-	Mhun_0793	-	nitrogenase
765	 40.95	0	907547..908518	-	323	88602087	-	Mhun_0794	-	phosphoribulokinase/uridine kinase
766	 43.43	0	908567..909754	-	395	88602088	-	Mhun_0795	-	beta-lactamase-like
767	 38.16	-1	909861..910544	+	227	88602089	-	Mhun_0796	-	hypothetical protein
768	 47.42	0	911011..912423	+	470	88602090	-	Mhun_0797	-	hypothetical protein
769	 41.15	0	912482..912724	+	80	88602091	-	Mhun_0798	-	hypothetical protein
770	 44.88	0	912702..913307	-	201	88602092	-	Mhun_0799	-	hypothetical protein
771	 40.21	-1	913353..914108	+	251	88602093	-	Mhun_0800	-	glutamine amidotransferase class-I
772	 44.77	0	914166..914681	+	171	88602094	-	Mhun_0801	-	protein of unknown function DUF395, YeeE/YedE
773	 44.98	0	914691..915248	+	185	88602095	-	Mhun_0802	-	YeeE/YedE family protein
774	 45.99	0	915280..915603	+	107	88602096	-	Mhun_0803	-	hypothetical protein
775	 45.37	0	915743..916066	-	107	88602097	-	Mhun_0804	-	transcription factor S
776	 44.36	0	916176..917009	+	277	88602098	-	Mhun_0805	-	cytochrome oxidase, subunit I, putative
777	 42.65	0	916957..917589	-	210	88602099	-	Mhun_0806	-	CDP-alcohol phosphatidyltransferase
778	 45.67	0	917747..918427	+	226	88602100	-	Mhun_0807	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
779	 45.71	0	918441..919709	-	422	88602101	-	Mhun_0808	-	pseudouridylate synthase
780	 43.25	0	919706..920068	-	120	88602102	-	Mhun_0809	-	peptidyl-tRNA hydrolase
781	 48.40	0	920154..921308	+	384	88602103	-	Mhun_0810	-	geranylgeranyl reductase
782	 44.85	0	921350..921679	+	109	88602104	-	Mhun_0811	-	hypothetical protein
783	 41.35	0	921685..923043	-	452	88602105	-	Mhun_0812	-	tetratricopeptide TPR_2
784	 42.81	0	923129..924025	-	298	88602106	-	Mhun_0813	-	radical SAM family protein
785	 42.57	0	924044..924931	-	295	88602107	-	Mhun_0814	-	hypothetical protein
786	 42.75	0	924988..925380	+	130	88602108	-	Mhun_0815	-	thioredoxin-related
787	 44.44	0	925382..925876	-	164	88602109	-	Mhun_0816	-	hypothetical protein
788	 46.22	0	926312..928717	-	801	88602110	-	Mhun_0817	-	AAA family ATPase, CDC48 subfamily protein
789	 44.16	0	928707..929288	-	193	88602111	-	Mhun_0818	-	5-formyltetrahydrofolate cyclo-ligase
790	 40.49	-1	929296..930357	-	353	88602112	-	Mhun_0819	-	hypothetical protein
791	 40.23	-1	930501..930761	+	86	88602113	-	Mhun_0820	-	hypothetical protein
792	 41.44	0	930769..932310	-	513	88602114	-	Mhun_0821	-	hypothetical protein
793	 39.70	-1	932331..933131	-	266	88602115	-	Mhun_0822	-	hypothetical protein
794	 39.55	-1	933393..933923	+	176	88602116	-	Mhun_0823	-	hypothetical protein
795	 47.20	0	933933..935273	-	446	88602117	-	Mhun_0824	-	adenylosuccinate lyase
796	 44.35	0	935376..935729	+	117	88602118	-	Mhun_0825	-	hypothetical protein
797	 48.86	0	935701..936531	+	276	88602119	-	Mhun_0826	-	TatD-related deoxyribonuclease
798	 44.90	0	936577..936870	+	97	88602120	-	Mhun_0827	-	hypothetical protein
799	 48.17	0	936884..937921	+	345	88602121	-	Mhun_0828	-	hypothetical protein
800	 46.37	0	937934..938800	+	288	88602122	-	Mhun_0829	-	protein of unknown function Met10
801	 47.76	0	938797..939933	+	378	88602123	-	Mhun_0830	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
802	 46.78	0	939936..940805	+	289	88602124	-	Mhun_0831	-	GHMP kinase
803	 48.50	0	940802..941533	+	243	88602125	-	Mhun_0832	-	hypothetical protein
804	 47.49	0	941520..942515	+	331	88602126	-	Mhun_0833	-	replication factor C small subunit 2
805	 45.38	0	942545..943258	+	237	88602127	-	Mhun_0834	-	UbiE/COQ5 methyltransferase
806	 40.14	-1	943280..943705	-	141	88602128	-	Mhun_0835	-	hypothetical protein
807	 45.57	0	943883..945337	+	484	88602129	-	Mhun_0836	-	Alpha-amylase
808	 47.54	0	945941..947080	+	379	88602130	-	Mhun_0837	-	glycosyl transferase, group 1
809	 45.18	0	947790..948287	+	165	88602131	-	Mhun_0838	-	hypothetical protein
810	 48.48	0	948289..950256	+	655	88602132	-	Mhun_0839	-	DNA polymerase I
811	 40.27	-1	950434..951024	+	196	88602133	-	Mhun_0840	-	response regulator receiver domain-containing protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.