IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
661	 47.40	0	797479..798054	-	191	88601983	-	Mhun_0689	-	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
662	 50.08	0	798051..800414	-	787	88601984	-	Mhun_0690	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
663	 48.66	0	800485..801267	-	260	88601985	-	Mhun_0691	-	CODH nickel-insertion accessory protein
664	 48.97	0	801264..802043	-	259	88601986	-	Mhun_0692	-	cobyrinic acid a,c-diamide synthase
665	 39.96	-1	802358..802810	-	150	88601987	-	Mhun_0693	-	hypothetical protein
666	 41.85	0	803149..804264	-	371	88601988	-	Mhun_0694	-	ABC-type branched-chain amino acid transport systems periplasmic component-like
667	 41.47	0	804720..806120	-	466	88601989	-	Mhun_0695	-	glycoside hydrolase family protein
668	 41.33	0	806117..807004	-	295	88601990	-	Mhun_0696	-	hypothetical protein
669	 34.70	-2	807043..808653	-	536	88601991	-	Mhun_0697	-	transposase, IS4
670	 35.19	-2	808691..809068	-	125	88601992	-	Mhun_0698	-	hypothetical protein
671	 43.85	0	809187..809690	+	167	88601993	-	Mhun_0699	-	hypothetical protein
672	 34.97	-2	809787..811496	-	569	88601994	-	Mhun_0700	-	multi-sensor signal transduction histidine kinase
673	 46.52	0	811719..812825	+	368	88601995	-	Mhun_0701	-	aldo/keto reductase
674	 47.21	0	812878..813576	-	232	88601996	-	Mhun_0702	-	hypothetical protein
675	 52.24	+1	813786..814097	-	103	88601997	-	Mhun_0703	-	hypothetical protein
676	 50.05	0	814094..816031	-	645	88601998	-	Mhun_0704	-	hypothetical protein
677	 32.84	-2	816326..816931	-	201	88601999	-	Mhun_0705	-	hypothetical protein
678	 36.45	-1	816895..817311	-	138	88602000	-	Mhun_0706	-	hypothetical protein
679	 51.71	+1	817404..818279	-	291	88602001	-	Mhun_0707	-	hypothetical protein
680	 52.58	+1	818276..818566	-	96	88602002	-	Mhun_0708	-	hypothetical protein
681	 52.85	+1	818563..818895	-	110	88602003	-	Mhun_0709	-	hypothetical protein
682	 45.63	0	818885..819250	-	121	88602004	-	Mhun_0710	-	hypothetical protein
683	 45.30	0	819647..819880	-	77	88602005	-	Mhun_0711	-	YcfA-like
684	 39.27	-1	819873..820226	-	117	88602006	-	Mhun_0712	-	hypothetical protein
685	 44.02	0	820351..820584	+	77	88602007	-	Mhun_0713	-	hypothetical protein
686	 37.67	-1	820581..820880	+	99	88602008	-	Mhun_0714	-	hypothetical protein
687	 35.74	-1	821424..821672	-	82	88602009	-	Mhun_0715	-	hypothetical protein
688	 42.02	0	822066..822629	+	187	88602010	-	Mhun_0716	-	hypothetical protein
689	 42.53	0	823062..823235	-	57	88602011	-	Mhun_0717	-	hypothetical protein
690	 35.51	-2	823565..823978	+	137	88602012	-	Mhun_0718	-	hypothetical protein
691	 32.74	-2	824173..825531	-	452	88602013	-	Mhun_0719	-	transposase, IS4
692	 37.30	-1	825776..826330	+	184	88602014	-	Mhun_0720	-	hypothetical protein
693	 43.45	0	826338..827306	-	322	88602015	-	Mhun_0721	-	histone deacetylase superfamily protein
694	 42.46	0	827674..829524	+	616	88602016	-	Mhun_0722	-	hypothetical protein
695	 46.53	0	829598..830635	+	345	88602017	-	Mhun_0723	-	TPR repeat-containing protein
696	 43.85	0	830793..831515	+	240	88602018	-	Mhun_0724	-	hypothetical protein
697	 42.64	0	831972..832745	+	257	88602019	-	Mhun_0725	-	hypothetical protein
698	 42.26	0	832719..833345	-	208	88602020	-	Mhun_0726	-	hypothetical protein
699	 38.45	-1	833532..834371	+	279	88602021	-	Mhun_0727	-	hypothetical protein
700	 41.70	0	834380..836578	+	732	88602022	-	Mhun_0728	-	hypothetical protein
701	 42.25	0	836649..838331	+	560	88602023	-	Mhun_0729	-	metal dependent phosphohydrolase
702	 47.42	0	838343..839620	+	425	88602024	-	Mhun_0730	-	CRISPR-associated TM1812 family protein
703	 47.61	0	839622..840875	-	417	88602025	-	Mhun_0731	-	CRISPR-associated TM1812 family protein
704	 36.45	-1	843428..843844	+	138	88602026	-	Mhun_0732	-	hypothetical protein
705	 32.84	-2	843808..844413	+	201	88602027	-	Mhun_0733	-	hypothetical protein
706	 44.44	0	845232..845519	-	95	88602028	-	Mhun_0734	-	hypothetical protein
707	 47.49	0	845516..846511	-	331	88602029	-	Mhun_0735	-	CRISPR-associated Cas1 family protein
708	 44.65	0	846668..847975	+	435	88602030	-	Mhun_0736	-	metallophosphoesterase
709	 41.34	0	847965..851813	+	1282	88602031	-	Mhun_0737	-	hypothetical protein
710	 42.14	0	851870..852721	-	283	88602032	-	Mhun_0738	-	hypothetical protein
711	 46.12	0	855752..857041	-	429	88602033	-	Mhun_0739	-	hypothetical protein
712	 48.84	0	857053..857826	-	257	88602034	-	Mhun_0740	-	hypothetical protein
713	 46.43	0	857826..858413	-	195	88602035	-	Mhun_0741	-	hypothetical protein
714	 44.79	0	858417..858896	-	159	88602036	-	Mhun_0742	-	hypothetical protein
715	 47.46	0	858896..859978	-	360	88602037	-	Mhun_0743	-	hypothetical protein
716	 43.18	0	859983..860642	-	219	88602038	-	Mhun_0744	-	hypothetical protein
717	 42.31	0	860642..863113	-	823	88602039	-	Mhun_0745	-	metal dependent phosphohydrolase
718	 39.04	-1	863115..863903	-	262	88602040	-	Mhun_0746	-	hypothetical protein
719	 38.23	-1	864081..864713	-	210	88602041	-	Mhun_0747	-	hypothetical protein
720	 35.24	-2	865383..865697	+	104	88602042	-	Mhun_0748	-	excisionase/Xis, DNA-binding
721	 43.75	0	865779..868754	-	991	88602043	-	Mhun_0749	-	TPR repeat-containing protein
722	 37.78	-1	869313..869582	-	89	88602044	-	Mhun_0750	-	hypothetical protein
723	 36.92	-1	869738..870016	-	92	88602045	-	Mhun_0751	-	plasmid stabilization system protein
724	 38.60	-1	870016..870243	-	75	88602046	-	Mhun_0752	-	hypothetical protein
725	 35.42	-2	870773..871060	-	95	88602047	-	Mhun_0754	-	hypothetical protein
726	 41.05	0	871057..871911	-	284	88602048	-	Mhun_0755	-	hypothetical protein
727	 38.10	-1	872273..872902	-	209	88602049	-	Mhun_0756	-	integral membrane protein-like
728	 42.42	0	873074..873304	+	76	88602050	-	Mhun_0757	-	hypothetical protein
729	 46.36	0	873305..874018	-	237	88602051	-	Mhun_0758	-	ABC transporter related
730	 45.61	0	874021..875226	-	401	88602052	-	Mhun_0759	-	hypothetical protein
731	 45.02	0	875226..876509	-	427	88602053	-	Mhun_0760	-	S-layer-like domain-containing protein
732	 45.72	0	876577..877335	-	252	88602054	-	Mhun_0761	-	hypothetical protein
733	 43.99	0	877332..877913	-	193	88602055	-	Mhun_0762	-	hypothetical protein
734	 44.65	0	877900..878226	-	108	88602056	-	Mhun_0763	-	PadR-like family transcriptional regulator
735	 41.86	0	878479..879135	+	218	88602057	-	Mhun_0764	-	hypothetical protein
736	 41.67	0	879195..879686	+	163	88602058	-	Mhun_0765	-	hypothetical protein
737	 35.20	-2	879701..880075	-	124	88602059	-	Mhun_0766	-	DNA polymerase, beta-like region
738	 37.86	-1	880057..880476	-	139	88602060	-	Mhun_0767	-	hypothetical protein
739	 42.25	0	880525..882768	-	747	88602061	-	Mhun_0768	-	hydrophobe/amphiphile efflux-3 HAE3
740	 44.89	0	882790..884139	-	449	88602062	-	Mhun_0769	-	S-layer-like domain-containing protein
741	 42.27	0	884291..885610	+	439	88602063	-	Mhun_0770	-	putative PAS/PAC sensor protein
742	 43.16	0	885827..887017	+	396	88602064	-	Mhun_0771	-	ammonium transporter
743	 39.29	-1	887056..888063	-	335	88602065	-	Mhun_0772	-	hypothetical protein
744	 37.07	-1	888144..888518	-	124	88602066	-	Mhun_0773	-	desulfoferrodoxin ferrous iron-binding domain-containing protein
745	 38.85	-1	888900..890459	-	519	88602067	-	Mhun_0774	-	tetratricopeptide TPR_2
746	 33.65	-2	890536..891171	-	211	88602068	-	Mhun_0775	-	hypothetical protein
747	 33.94	-2	891168..891821	-	217	88602069	-	Mhun_0776	-	hypothetical protein
748	 37.73	-1	892639..893025	+	128	88602070	-	Mhun_0777	-	hypothetical protein
749	 39.65	-1	893315..894232	-	305	88602071	-	Mhun_0778	-	glycosyl transferase family protein
750	 42.57	0	894365..895696	-	443	88602072	-	Mhun_0779	-	glutamine synthetase, type I
751	 45.77	0	896007..897059	+	350	88602073	-	Mhun_0780	-	glutamine amidotransferase, class-II
752	 46.36	0	897056..898567	+	503	88602074	-	Mhun_0781	-	glutamate synthase (NADPH)
753	 45.75	0	898569..899309	+	246	88602075	-	Mhun_0782	-	glutamate synthase, alpha subunit-like
754	 45.07	0	899314..900327	+	337	88602076	-	Mhun_0783	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
755	 44.67	0	900397..901410	+	337	88602077	-	Mhun_0784	-	radical SAM family protein
756	 44.40	0	901407..902183	+	258	88602078	-	Mhun_0785	-	undecaprenyl diphosphate synthase
757	 39.71	-1	902186..902812	-	208	88602079	-	Mhun_0786	-	di-trans-poly-cis-decaprenylcistransferase
758	 39.57	-1	903046..903750	+	234	88602080	-	Mhun_0787	-	hypothetical protein
759	 43.48	0	903756..904514	+	252	88602081	-	Mhun_0788	-	diphthine synthase
760	 38.89	-1	904501..905076	+	191	88602082	-	Mhun_0789	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.