IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
629	 54.17	+1	759916..760227	-	103	88601951	rpl12p	Mhun_0654	-	50S ribosomal protein L12P
630	 48.41	0	760278..761126	-	282	88601952	rplP0	Mhun_0655	-	acidic ribosomal protein P0
631	 48.61	0	761126..761773	-	215	88601953	-	Mhun_0656	-	ribosomal protein L1
632	 50.52	0	761838..762314	-	158	88601954	-	Mhun_0657	-	ribosomal protein L11
633	 51.76	+1	762413..762895	-	160	88601955	-	Mhun_0658	-	NusG antitermination factor
634	 45.83	0	762901..763092	-	63	88601956	-	Mhun_0659	-	protein translocase SEC61 complex gamma subunit
635	 51.42	+1	763098..764186	-	362	88601957	-	Mhun_0660	-	cell division protein FtsZ
636	 48.31	0	764183..765511	-	442	88601958	-	Mhun_0661	-	hypothetical protein
637	 36.51	-1	765524..767257	-	577	88601959	-	Mhun_0662	-	transposase, IS4
638	 48.51	0	767558..768769	+	403	88601960	-	Mhun_0663	-	MoeA-likedomain-containing protein
639	 47.43	0	768766..770631	+	621	88601961	-	Mhun_0664	-	molybdopterin binding domain-containing protein
640	 44.33	0	770634..771242	-	202	88601962	-	Mhun_0665	-	hypothetical protein
641	 46.28	0	771224..772042	-	272	88601963	-	Mhun_0666	-	triphosphoribosyl-dephospho-CoA protein
642	 46.11	0	772039..773142	-	367	88601964	-	Mhun_0667	-	hypothetical protein
643	 45.27	0	773321..773722	+	133	88601965	-	Mhun_0668	-	sirohydrochlorin cobaltochelatase
644	 46.58	0	773722..774936	+	404	88601966	-	Mhun_0669	-	hypothetical protein
645	 49.30	0	774936..776000	+	354	88601967	-	Mhun_0670	-	hypothetical protein
646	 48.20	0	775997..777388	+	463	88601968	-	Mhun_0671	-	cobyrinic acid a,c-diamide synthase
647	 45.86	0	777444..778337	+	297	88601969	-	Mhun_0672	-	branched-chain amino acid aminotransferase
648	 43.49	0	778630..779328	+	232	88601970	-	Mhun_0673	-	beta-lactamase-like
649	 39.71	-1	779527..779871	+	114	88601971	-	Mhun_0674	-	hypothetical protein
650	 38.58	-1	779858..780391	+	177	88601972	-	Mhun_0675	-	hypothetical protein
651	 42.26	0	780391..780726	+	111	88601973	-	Mhun_0676	-	transcriptional modulator of MazE/toxin, MazF
652	 42.55	0	782235..782831	-	198	88601974	-	Mhun_0679	-	hypothetical protein
653	 44.57	0	782961..785078	+	705	88601975	-	Mhun_0680	-	sodium/hydrogen exchanger
654	 39.79	-1	785309..787414	-	701	88601976	-	Mhun_0681	-	methyl-accepting chemotaxis sensory transducer
655	 47.10	0	789194..790471	+	425	88601977	-	Mhun_0683	-	amino acid permease-associated region
656	 47.02	0	790707..791546	+	279	88601978	-	Mhun_0684	-	MerR family transcriptional regulator
657	 49.52	0	791480..793363	-	627	88601979	-	Mhun_0685	-	ferredoxin
658	 48.29	0	793399..794829	-	476	88601980	-	Mhun_0686	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
659	 51.08	+1	794840..796090	-	416	88601981	-	Mhun_0687	-	acetyl-CoA decarbonylase/synthase complex subunit delta
660	 47.29	0	796083..797486	-	467	88601982	-	Mhun_0688	-	acetyl-CoA decarbonylase/synthase complex subunit beta
661	 47.40	0	797479..798054	-	191	88601983	-	Mhun_0689	-	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
662	 50.08	0	798051..800414	-	787	88601984	-	Mhun_0690	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
663	 48.66	0	800485..801267	-	260	88601985	-	Mhun_0691	-	CODH nickel-insertion accessory protein
664	 48.97	0	801264..802043	-	259	88601986	-	Mhun_0692	-	cobyrinic acid a,c-diamide synthase
665	 39.96	-1	802358..802810	-	150	88601987	-	Mhun_0693	-	hypothetical protein
666	 41.85	0	803149..804264	-	371	88601988	-	Mhun_0694	-	ABC-type branched-chain amino acid transport systems periplasmic component-like
667	 41.47	0	804720..806120	-	466	88601989	-	Mhun_0695	-	glycoside hydrolase family protein
668	 41.33	0	806117..807004	-	295	88601990	-	Mhun_0696	-	hypothetical protein
669	 34.70	-2	807043..808653	-	536	88601991	-	Mhun_0697	-	transposase, IS4
670	 35.19	-2	808691..809068	-	125	88601992	-	Mhun_0698	-	hypothetical protein
671	 43.85	0	809187..809690	+	167	88601993	-	Mhun_0699	-	hypothetical protein
672	 34.97	-2	809787..811496	-	569	88601994	-	Mhun_0700	-	multi-sensor signal transduction histidine kinase
673	 46.52	0	811719..812825	+	368	88601995	-	Mhun_0701	-	aldo/keto reductase
674	 47.21	0	812878..813576	-	232	88601996	-	Mhun_0702	-	hypothetical protein
675	 52.24	+1	813786..814097	-	103	88601997	-	Mhun_0703	-	hypothetical protein
676	 50.05	0	814094..816031	-	645	88601998	-	Mhun_0704	-	hypothetical protein
677	 32.84	-2	816326..816931	-	201	88601999	-	Mhun_0705	-	hypothetical protein
678	 36.45	-1	816895..817311	-	138	88602000	-	Mhun_0706	-	hypothetical protein
679	 51.71	+1	817404..818279	-	291	88602001	-	Mhun_0707	-	hypothetical protein
680	 52.58	+1	818276..818566	-	96	88602002	-	Mhun_0708	-	hypothetical protein
681	 52.85	+1	818563..818895	-	110	88602003	-	Mhun_0709	-	hypothetical protein
682	 45.63	0	818885..819250	-	121	88602004	-	Mhun_0710	-	hypothetical protein
683	 45.30	0	819647..819880	-	77	88602005	-	Mhun_0711	-	YcfA-like
684	 39.27	-1	819873..820226	-	117	88602006	-	Mhun_0712	-	hypothetical protein
685	 44.02	0	820351..820584	+	77	88602007	-	Mhun_0713	-	hypothetical protein
686	 37.67	-1	820581..820880	+	99	88602008	-	Mhun_0714	-	hypothetical protein
687	 35.74	-1	821424..821672	-	82	88602009	-	Mhun_0715	-	hypothetical protein
688	 42.02	0	822066..822629	+	187	88602010	-	Mhun_0716	-	hypothetical protein
689	 42.53	0	823062..823235	-	57	88602011	-	Mhun_0717	-	hypothetical protein
690	 35.51	-2	823565..823978	+	137	88602012	-	Mhun_0718	-	hypothetical protein
691	 32.74	-2	824173..825531	-	452	88602013	-	Mhun_0719	-	transposase, IS4
692	 37.30	-1	825776..826330	+	184	88602014	-	Mhun_0720	-	hypothetical protein
693	 43.45	0	826338..827306	-	322	88602015	-	Mhun_0721	-	histone deacetylase superfamily protein
694	 42.46	0	827674..829524	+	616	88602016	-	Mhun_0722	-	hypothetical protein
695	 46.53	0	829598..830635	+	345	88602017	-	Mhun_0723	-	TPR repeat-containing protein
696	 43.85	0	830793..831515	+	240	88602018	-	Mhun_0724	-	hypothetical protein
697	 42.64	0	831972..832745	+	257	88602019	-	Mhun_0725	-	hypothetical protein
698	 42.26	0	832719..833345	-	208	88602020	-	Mhun_0726	-	hypothetical protein
699	 38.45	-1	833532..834371	+	279	88602021	-	Mhun_0727	-	hypothetical protein
700	 41.70	0	834380..836578	+	732	88602022	-	Mhun_0728	-	hypothetical protein
701	 42.25	0	836649..838331	+	560	88602023	-	Mhun_0729	-	metal dependent phosphohydrolase
702	 47.42	0	838343..839620	+	425	88602024	-	Mhun_0730	-	CRISPR-associated TM1812 family protein
703	 47.61	0	839622..840875	-	417	88602025	-	Mhun_0731	-	CRISPR-associated TM1812 family protein
704	 36.45	-1	843428..843844	+	138	88602026	-	Mhun_0732	-	hypothetical protein
705	 32.84	-2	843808..844413	+	201	88602027	-	Mhun_0733	-	hypothetical protein
706	 44.44	0	845232..845519	-	95	88602028	-	Mhun_0734	-	hypothetical protein
707	 47.49	0	845516..846511	-	331	88602029	-	Mhun_0735	-	CRISPR-associated Cas1 family protein
708	 44.65	0	846668..847975	+	435	88602030	-	Mhun_0736	-	metallophosphoesterase
709	 41.34	0	847965..851813	+	1282	88602031	-	Mhun_0737	-	hypothetical protein
710	 42.14	0	851870..852721	-	283	88602032	-	Mhun_0738	-	hypothetical protein
711	 46.12	0	855752..857041	-	429	88602033	-	Mhun_0739	-	hypothetical protein
712	 48.84	0	857053..857826	-	257	88602034	-	Mhun_0740	-	hypothetical protein
713	 46.43	0	857826..858413	-	195	88602035	-	Mhun_0741	-	hypothetical protein
714	 44.79	0	858417..858896	-	159	88602036	-	Mhun_0742	-	hypothetical protein
715	 47.46	0	858896..859978	-	360	88602037	-	Mhun_0743	-	hypothetical protein
716	 43.18	0	859983..860642	-	219	88602038	-	Mhun_0744	-	hypothetical protein
717	 42.31	0	860642..863113	-	823	88602039	-	Mhun_0745	-	metal dependent phosphohydrolase
718	 39.04	-1	863115..863903	-	262	88602040	-	Mhun_0746	-	hypothetical protein
719	 38.23	-1	864081..864713	-	210	88602041	-	Mhun_0747	-	hypothetical protein
720	 35.24	-2	865383..865697	+	104	88602042	-	Mhun_0748	-	excisionase/Xis, DNA-binding
721	 43.75	0	865779..868754	-	991	88602043	-	Mhun_0749	-	TPR repeat-containing protein
722	 37.78	-1	869313..869582	-	89	88602044	-	Mhun_0750	-	hypothetical protein
723	 36.92	-1	869738..870016	-	92	88602045	-	Mhun_0751	-	plasmid stabilization system protein
724	 38.60	-1	870016..870243	-	75	88602046	-	Mhun_0752	-	hypothetical protein
725	 35.42	-2	870773..871060	-	95	88602047	-	Mhun_0754	-	hypothetical protein
726	 41.05	0	871057..871911	-	284	88602048	-	Mhun_0755	-	hypothetical protein
727	 38.10	-1	872273..872902	-	209	88602049	-	Mhun_0756	-	integral membrane protein-like
728	 42.42	0	873074..873304	+	76	88602050	-	Mhun_0757	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.