IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.58	0	18..266	+	82	88601323	-	Mhun_0001	-	hypothetical protein
2	 45.48	0	505..891	-	128	88601324	-	Mhun_0002	-	tetratricopeptide TPR_2
3	 46.93	0	1257..1859	-	200	88601325	-	Mhun_0003	-	CheW protein
4	 46.60	0	2056..5175	+	1039	88601326	-	Mhun_0004	-	multi-sensor signal transduction histidine kinase
5	 45.38	0	5172..9371	+	1399	88601327	-	Mhun_0005	-	PAS/PAC sensor signal transduction histidine kinase
6	 46.97	0	9683..10921	-	412	88601328	-	Mhun_0006	-	putative PAS/PAC sensor protein
7	 44.31	0	11176..11685	-	169	88601329	-	Mhun_0007	-	CheW protein
8	 46.15	0	11694..13253	-	519	88601330	-	Mhun_0008	-	methyl-accepting chemotaxis sensory transducer
9	 34.82	-2	13386..14996	+	536	88601331	-	Mhun_0009	-	transposase, IS4
10	 43.68	0	15045..17297	-	750	88601332	-	Mhun_0010	-	putative PAS/PAC sensor protein
11	 44.57	0	17422..20331	+	969	88601333	-	Mhun_0011	-	putative PAS/PAC sensor protein
12	 43.02	0	20995..22542	+	515	88601334	-	Mhun_0014	-	hypothetical protein
13	 47.15	0	22854..24974	-	706	88601335	-	Mhun_0015	-	methyl-accepting chemotaxis sensory transducer
14	 49.01	0	25025..28054	-	1009	88601336	-	Mhun_0016	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
15	 48.88	0	28470..30347	-	625	88601337	-	Mhun_0018	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
16	 40.58	-1	30650..30925	+	91	88601338	-	Mhun_0019	-	hypothetical protein
17	 50.45	0	30912..31688	-	258	88601339	-	Mhun_0020	-	hypothetical protein
18	 48.38	0	31691..32494	-	267	88601340	-	Mhun_0021	-	dihydropteroate synthase
19	 49.88	0	32476..33315	-	279	88601341	-	Mhun_0022	-	methenyltetrahydrofolate cyclohydrolase
20	 47.44	0	33312..34622	-	436	88601342	-	Mhun_0023	-	serine hydroxymethyltransferase
21	 48.65	0	34729..35172	+	147	88601343	-	Mhun_0024	-	hypothetical protein
22	 46.73	0	35214..38654	+	1146	88601344	-	Mhun_0025	-	chromosome segregation protein SMC
23	 48.98	0	38647..39381	+	244	88601345	-	Mhun_0026	-	chromosome segregation and condensation protein ScpA
24	 42.62	0	45012..45851	+	279	88601346	-	Mhun_0027	-	hypothetical protein
25	 40.79	0	45870..46526	-	218	88601347	-	Mhun_0028	-	amino acid ABC transporter permease
26	 43.29	0	46536..47288	-	250	88601348	-	Mhun_0029	-	ABC transporter related
27	 45.24	0	47293..47964	-	223	88601349	-	Mhun_0030	-	amino acid ABC transporter permease
28	 46.15	0	48086..48904	-	272	88601350	-	Mhun_0031	-	extracellular solute-binding protein
29	 43.08	0	49051..49881	+	276	88601351	-	Mhun_0032	-	extracellular solute-binding protein
30	 44.96	0	49961..51052	+	363	88601352	-	Mhun_0033	-	hypothetical protein
31	 45.04	0	51100..52995	+	631	88601353	-	Mhun_0034	-	peptidyl-arginine deiminase
32	 39.45	-1	53027..53353	+	108	88601354	-	Mhun_0035	-	large conductance mechanosensitive channel protein
33	 44.63	0	53356..53886	+	176	88601355	-	Mhun_0036	-	hypothetical protein
34	 46.48	0	53918..54655	+	245	88601356	-	Mhun_0037	-	hypothetical protein
35	 44.35	0	54652..55005	+	117	88601357	-	Mhun_0038	-	zinc finger, SWIM-type
36	 48.35	0	55025..57775	+	916	88601358	alaS	Mhun_0039	-	alanyl-tRNA synthetase
37	 48.74	0	57768..58442	+	224	88601359	-	Mhun_0040	-	putative transcriptional regulator
38	 43.23	0	58695..59573	-	292	88601360	-	Mhun_0041	-	hypothetical protein
39	 45.56	0	59600..59959	-	119	88601361	-	Mhun_0042	-	hypothetical protein
40	 42.28	0	60009..60746	+	245	88601362	-	Mhun_0043	-	hypothetical protein
41	 44.51	0	60775..61302	-	175	88601363	-	Mhun_0044	-	Ferritin and Dps
42	 49.25	0	61557..63146	+	529	88601364	-	Mhun_0045	-	ferredoxin-dependent glutamate synthase
43	 43.78	0	63530..63730	+	66	88601365	-	Mhun_0046	-	hypothetical protein
44	 45.70	0	63922..65118	+	398	88601366	-	Mhun_0047	-	hypothetical protein
45	 45.58	0	65248..66423	-	391	88601367	-	Mhun_0048	-	hypothetical protein
46	 43.65	0	66843..67094	+	83	88601368	rpoH	Mhun_0049	-	DNA-directed RNA polymerase subunit H
47	 50.10	0	67113..68669	+	518	88601369	-	Mhun_0050	-	DNA-directed RNA polymerase subunit beta''
48	 48.43	0	68669..70489	+	606	88601370	-	Mhun_0051	-	DNA-directed RNA polymerase subunit B'
49	 51.41	+1	70504..73164	+	886	88601371	-	Mhun_0052	-	DNA-directed RNA polymerase subunit alpha
50	 48.17	0	73164..75125	+	653	88601372	-	Mhun_0053	-	DNA-directed RNA polymerase, subunit A''
51	 48.61	0	75137..75424	+	95	88601373	-	Mhun_0054	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
52	 44.99	0	75434..75862	+	142	88601374	-	Mhun_0055	-	NusA family protein
53	 45.29	0	75926..76711	+	261	88601375	-	Mhun_0056	-	hypothetical protein
54	 44.19	0	76877..77272	-	131	88601376	-	Mhun_0057	-	hypothetical protein
55	 46.80	0	77278..78012	-	244	88601377	-	Mhun_0058	-	hypothetical protein
56	 46.19	0	78113..78571	+	152	88601378	-	Mhun_0059	-	hypothetical protein
57	 46.35	0	78586..80706	+	706	88601379	-	Mhun_0060	-	serine phosphatase
58	 43.46	0	80711..82429	-	572	88601380	-	Mhun_0061	-	hypothetical protein
59	 44.16	0	82520..82870	+	116	88601381	-	Mhun_0062	-	anti-sigma-factor antagonist domain-containing protein
60	 43.03	0	82894..83316	+	140	88601382	-	Mhun_0063	-	putative anti-sigma regulatory factor (serine/threonine protein kinase)
61	 48.20	0	83363..84169	+	268	88601383	-	Mhun_0064	-	hypothetical protein
62	 46.43	0	84323..84826	+	167	88601384	-	Mhun_0065	-	hypothetical protein
63	 45.91	0	84949..85449	+	166	88601385	-	Mhun_0066	-	hypothetical protein
64	 45.57	0	85562..86035	-	157	88601386	-	Mhun_0067	-	superfamily II helicase-like protein
65	 43.80	0	86233..87780	-	515	88601387	-	Mhun_0068	-	hypothetical protein
66	 45.23	0	88206..88844	-	212	88601388	-	Mhun_0069	-	hypothetical protein
67	 49.74	0	88986..90149	+	387	88601389	-	Mhun_0070	-	thiamine biosynthesis protein
68	 47.72	0	90155..91336	-	393	88601390	-	Mhun_0071	-	Sep-tRNA:Cys-tRNA synthetase
69	 34.82	-2	91462..93072	-	536	88601391	-	Mhun_0072	-	transposase, IS4
70	 49.04	0	93392..94333	-	313	88601392	-	Mhun_0073	-	hypothetical protein
71	 50.74	0	94371..95858	+	495	88601393	-	Mhun_0074	-	hypothetical protein
72	 50.99	+1	95860..96720	-	286	88601394	-	Mhun_0075	-	formate/nitrite transporter
73	 48.71	0	96787..98529	-	580	88601395	-	Mhun_0076	-	hypothetical protein
74	 51.44	+1	98547..99446	-	299	88601396	-	Mhun_0077	-	PfkB
75	 45.43	0	99443..99781	-	112	88601397	-	Mhun_0078	-	hypothetical protein
76	 49.62	0	99805..100332	-	175	88601398	-	Mhun_0079	-	nitroreductase
77	 42.86	0	100319..100675	-	118	88601399	-	Mhun_0080	-	hypothetical protein
78	 56.05	+2	100865..101203	-	112	88601400	-	Mhun_0081	-	hypothetical protein
79	 50.46	0	101277..103121	-	614	88601401	-	Mhun_0082	-	glutamyl-tRNA(Gln) amidotransferase subunit E
80	 51.50	+1	103118..104350	-	410	88601402	-	Mhun_0083	-	glutamyl-tRNA(Gln) amidotransferase subunit D
81	 51.28	+1	104347..105828	-	493	88601403	-	Mhun_0084	-	argininosuccinate lyase
82	 49.48	0	105995..107047	+	350	88601404	-	Mhun_0085	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
83	 49.75	0	107137..107922	+	261	88601405	-	Mhun_0086	-	binding-protein-dependent transport systems inner membrane component
84	 48.11	0	107924..108715	+	263	88601406	-	Mhun_0087	-	ABC transporter related
85	 49.71	0	108746..109258	+	170	88601407	rpl10e	Mhun_0088	-	50S ribosomal protein L10e
86	 50.78	0	109328..110164	+	278	88601408	-	Mhun_0089	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
87	 53.41	+1	110161..110718	+	185	88601409	-	Mhun_0090	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
88	 52.75	+1	110715..110987	+	90	88601410	-	Mhun_0091	-	4Fe-4S ferredoxin, iron-sulfur binding
89	 51.23	+1	111001..112095	+	364	88601411	-	Mhun_0092	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
90	 49.37	0	112092..112883	+	263	88601412	-	Mhun_0093	-	thiamine pyrophosphate enzyme-like TPP-binding
91	 51.48	+1	112873..113412	+	179	88601413	-	Mhun_0094	-	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate
92	 49.91	0	113409..114488	+	359	88601414	-	Mhun_0095	-	succinyl-CoA synthetase, beta subunit
93	 55.13	+1	114485..115351	+	288	88601415	-	Mhun_0096	-	succinyl-CoA synthetase, alpha subunit
94	 51.41	+1	115352..116341	+	329	88601416	-	Mhun_0097	-	hypothetical protein
95	 48.71	0	116348..117082	+	244	88601417	-	Mhun_0098	-	hypothetical protein
96	 44.54	0	117084..117815	-	243	88601418	-	Mhun_0099	-	TPR repeat-containing protein
97	 49.78	0	118095..118988	+	297	88601419	-	Mhun_0100	-	hypothetical protein
98	 40.99	0	118997..119479	+	160	88601420	-	Mhun_0101	-	hypothetical protein
99	 32.92	-2	119487..119969	+	160	88601421	-	Mhun_0102	-	hypothetical protein
100	 45.78	0	120066..120836	+	256	88601422	-	Mhun_0103	-	flagellar accessory protein FlaH
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.