IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
538	 49.16	0	648082..649332	-	416	88601860	-	Mhun_0559	-	amino acid permease-associated region
539	 39.90	-1	649423..650031	-	202	88601861	-	Mhun_0560	-	hypothetical protein
540	 49.19	0	650142..650816	+	224	88601862	-	Mhun_0561	-	amino acid-binding ACT
541	 49.17	0	650849..651391	+	180	88601863	-	Mhun_0562	-	Sua5/YciO/YrdC/YwlC
542	 48.60	0	651391..652320	+	309	88601864	-	Mhun_0563	-	hypothetical protein
543	 45.78	0	652297..652995	-	232	88601865	-	Mhun_0564	-	hypothetical protein
544	 44.67	0	653027..653317	+	96	88601866	-	Mhun_0565	-	hypothetical protein
545	 49.10	0	653419..655485	-	688	88601867	-	Mhun_0566	-	CoA-binding
546	 48.30	0	655699..657576	+	625	88601868	-	Mhun_0567	-	acetate--CoA ligase
547	 47.59	0	657618..658178	+	186	88601869	-	Mhun_0568	-	transcription factor
548	 50.14	0	658437..659144	-	235	88601870	-	Mhun_0569	-	ribose 5-phosphate isomerase
549	 48.10	0	659189..660028	-	279	88601871	-	Mhun_0570	-	stationary-phase survival protein SurE
550	 48.67	0	660155..661054	+	299	88601872	-	Mhun_0571	-	hypothetical protein
551	 49.57	0	661041..661964	+	307	88601873	-	Mhun_0572	-	hypothetical protein
552	 51.69	+1	661928..662194	+	88	88601874	-	Mhun_0573	-	hypothetical protein
553	 46.67	0	662183..662752	-	189	88601875	-	Mhun_0574	-	hypothetical protein
554	 44.10	0	662825..663214	-	129	88601876	-	Mhun_0575	-	hypothetical protein
555	 48.57	0	664027..664236	+	69	88601877	-	Mhun_0576	-	transcription factor CBF/NF-Y histone
556	 39.91	-1	665099..665326	-	75	88601878	-	Mhun_0577	-	hypothetical protein
557	 33.78	-2	665313..665759	-	148	88601879	-	Mhun_0578	-	hypothetical protein
558	 50.36	0	666527..667084	-	185	88601880	-	Mhun_0579	-	hypothetical protein
559	 51.95	+1	667190..667420	-	76	88601881	-	Mhun_0580	-	hypothetical protein
560	 38.21	-1	668329..668574	+	81	88601882	-	Mhun_0581	-	hypothetical protein
561	 50.39	0	669670..670308	-	212	88601883	-	Mhun_0583	-	hypothetical protein
562	 37.31	-1	671023..671424	-	133	88601884	-	Mhun_0584	-	PilT protein-like
563	 45.24	0	672727..672936	-	69	88601885	-	Mhun_0585	-	hypothetical protein
564	 40.51	-1	672936..673130	-	64	88601886	-	Mhun_0586	-	YcfA-like
565	 46.32	0	673617..673847	-	76	88601887	-	Mhun_0587	-	DNA polymerase, beta-like region
566	 43.86	0	673968..674366	+	132	88601888	-	Mhun_0588	-	hypothetical protein
567	 33.70	-2	674511..674783	+	90	88601889	-	Mhun_0589	-	hypothetical protein
568	 34.82	-2	674864..676474	+	536	88601890	-	Mhun_0590	-	transposase, IS4
569	 48.02	0	677448..679115	-	555	88601891	-	Mhun_0592	-	AMP-dependent synthetase and ligase
570	 40.07	-1	679266..679844	+	192	88601892	-	Mhun_0593	-	transcription factor
571	 49.91	0	679848..682544	-	898	88601893	-	Mhun_0594	-	DEAD/DEAH box helicase-like
572	 46.11	0	682522..683241	-	239	88601894	-	Mhun_0595	-	metallophosphoesterase
573	 46.64	0	683289..684062	-	257	88601895	-	Mhun_0596	-	hypothetical protein
574	 49.42	0	684443..690031	+	1862	88601896	-	Mhun_0597	-	PKD
575	 44.89	0	690146..691633	+	495	88601897	-	Mhun_0598	-	EmrB/QacA family drug resistance transporter
576	 42.18	0	691654..692184	-	176	88601898	-	Mhun_0599	-	heat shock protein Hsp20
577	 38.07	-1	692213..692719	-	168	88601899	-	Mhun_0600	-	hypothetical protein
578	 47.21	0	692864..693850	+	328	88601900	-	Mhun_0601	-	ATPase
579	 46.96	0	693862..694749	+	295	88601901	-	Mhun_0602	-	hypothetical protein
580	 45.53	0	694746..695696	+	316	88601902	-	Mhun_0603	-	von Willebrand factor, type A
581	 46.16	0	695693..697306	+	537	88601903	-	Mhun_0604	-	hypothetical protein
582	 47.78	0	697572..699392	+	606	88601904	-	Mhun_0605	-	hypothetical protein
583	 49.48	0	699453..702641	+	1062	88601905	ileS	Mhun_0606	-	isoleucyl-tRNA synthetase
584	 46.58	0	705401..705634	+	77	88601906	-	Mhun_0609	-	hypothetical protein
585	 45.04	0	705686..706411	-	241	88601907	-	Mhun_0610	-	hypothetical protein
586	 40.61	-1	706421..706681	-	86	88601908	-	Mhun_0611	-	PRC-barrel
587	 43.43	0	706823..707614	+	263	88601909	-	Mhun_0612	-	protein of unknown function DUF306, Meta and HslJ
588	 48.50	0	707694..708827	+	377	88601910	-	Mhun_0613	-	peptidase M50
589	 50.06	0	708799..710472	-	557	88601911	-	Mhun_0614	-	radical SAM family protein
590	 48.79	0	710456..711076	-	206	88601912	-	Mhun_0615	-	hypothetical protein
591	 48.43	0	711066..712529	-	487	88601913	-	Mhun_0616	-	TrkA-N
592	 48.72	0	713000..716125	+	1041	88601914	-	Mhun_0617	-	HEAT repeat-containing PBS lyase
593	 51.17	+1	716189..717085	+	298	88601915	-	Mhun_0618	-	aspartate carbamoyltransferase
594	 45.94	0	717082..717549	+	155	88601916	-	Mhun_0619	-	aspartate carbamoyltransferase regulatory subunit
595	 50.39	0	717520..718029	-	169	88601917	-	Mhun_0620	-	phosphopantetheine adenylyltransferase
596	 47.76	0	718254..718745	+	163	88601918	-	Mhun_0621	-	carbonic anhydrase
597	 48.28	0	718738..720015	+	425	88601919	-	Mhun_0622	-	4Fe-4S ferredoxin, iron-sulfur binding
598	 49.86	0	720012..721076	+	354	88601920	-	Mhun_0623	-	putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase
599	 44.73	0	721087..721779	+	230	88601921	-	Mhun_0624	-	hypothetical protein
600	 46.26	0	721782..722624	-	280	88601922	ubiA	Mhun_0625	-	prenyltransferase
601	 50.13	0	722783..723895	+	370	88601923	-	Mhun_0626	-	tRNA (guanine-N(2)-)-methyltransferase
602	 46.63	0	724494..725606	-	370	88601924	-	Mhun_0627	-	small GTP-binding protein domain-containing protein
603	 34.82	-2	725882..727492	+	536	88601925	-	Mhun_0628	-	transposase, IS4
604	 46.99	0	728875..729555	+	226	88601926	-	Mhun_0629	-	multimeric flavodoxin WrbA-like
605	 48.20	0	729645..731420	+	591	88601927	-	Mhun_0630	-	thiamine pyrophosphate enzyme-like TPP-binding
606	 39.37	-1	731519..731899	+	126	88601928	-	Mhun_0631	-	hypothetical protein
607	 43.50	0	731903..732148	+	81	88601929	-	Mhun_0632	-	hypothetical protein
608	 48.74	0	732260..734044	-	594	88601930	-	Mhun_0633	-	TrkA-C
609	 46.90	0	734133..734729	-	198	88601931	-	Mhun_0634	-	GPR1/FUN34/yaaH
610	 43.72	0	734895..735125	+	76	88601932	-	Mhun_0635	-	hypothetical protein
611	 48.61	0	735757..738552	+	931	88601933	-	Mhun_0636	-	ATPase, E1-E2 type
612	 47.12	0	738549..739208	+	219	88601934	-	Mhun_0637	-	TrkA-N
613	 48.67	0	739208..739885	+	225	88601935	-	Mhun_0638	-	TrkA-N
614	 42.90	0	739932..740579	+	215	88601936	-	Mhun_0639	-	exonuclease
615	 40.40	-1	740616..743288	-	890	88601937	-	Mhun_0640	-	multi-sensor signal transduction histidine kinase
616	 41.37	0	743285..744541	-	418	88601938	-	Mhun_0641	-	extracellular ligand-binding receptor
617	 40.22	-1	744787..745992	+	401	88601939	-	Mhun_0642	-	putative PAS/PAC sensor protein
618	 40.03	-1	746040..746786	-	248	88601940	-	Mhun_0643	-	hypothetical protein
619	 47.30	0	746842..750120	-	1092	88601941	-	Mhun_0644	-	periplasmic copper-binding
620	 46.91	0	750188..751336	-	382	88601942	-	Mhun_0645	-	major facilitator transporter
621	 44.44	0	751333..751818	-	161	88601943	-	Mhun_0646	-	MarR family transcriptional regulator
622	 50.70	0	751960..753249	-	429	88601944	-	Mhun_0647	-	bifunctional hexulose-6-phosphate synthase/ribonuclease regulator
623	 47.87	0	753411..755054	+	547	88601945	-	Mhun_0648	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
624	 44.44	0	755096..755617	-	173	88601946	-	Mhun_0649	-	nitroreductase
625	 43.91	0	755691..757241	-	516	88601947	-	Mhun_0650	-	hypothetical protein
626	 50.67	0	757319..758362	-	347	88601948	-	Mhun_0651	-	hypothetical protein
627	 47.17	0	758438..758914	+	158	88601949	-	Mhun_0652	-	peptide methionine sulfoxide reductase
628	 45.72	0	758916..759827	+	303	88601950	-	Mhun_0653	-	type I phosphodiesterase/nucleotide pyrophosphatase
629	 54.17	+1	759916..760227	-	103	88601951	rpl12p	Mhun_0654	-	50S ribosomal protein L12P
630	 48.41	0	760278..761126	-	282	88601952	rplP0	Mhun_0655	-	acidic ribosomal protein P0
631	 48.61	0	761126..761773	-	215	88601953	-	Mhun_0656	-	ribosomal protein L1
632	 50.52	0	761838..762314	-	158	88601954	-	Mhun_0657	-	ribosomal protein L11
633	 51.76	+1	762413..762895	-	160	88601955	-	Mhun_0658	-	NusG antitermination factor
634	 45.83	0	762901..763092	-	63	88601956	-	Mhun_0659	-	protein translocase SEC61 complex gamma subunit
635	 51.42	+1	763098..764186	-	362	88601957	-	Mhun_0660	-	cell division protein FtsZ
636	 48.31	0	764183..765511	-	442	88601958	-	Mhun_0661	-	hypothetical protein
637	 36.51	-1	765524..767257	-	577	88601959	-	Mhun_0662	-	transposase, IS4
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.