IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
484	 46.81	0	586053..586334	+	93	88601806	-	Mhun_0503	-	hypothetical protein
485	 46.11	0	587634..588275	-	213	88601807	-	Mhun_0504	-	B3/4
486	 36.49	-1	588369..588653	+	94	88601808	-	Mhun_0505	-	hypothetical protein
487	 38.97	-1	588646..589053	+	135	88601809	-	Mhun_0506	-	hypothetical protein
488	 43.71	0	589851..590168	-	105	88601810	-	Mhun_0508	-	hypothetical protein
489	 40.48	-1	591135..591428	-	97	88601811	-	Mhun_0510	-	hypothetical protein
490	 38.98	-1	592230..593186	-	318	88601812	-	Mhun_0511	-	hypothetical protein
491	 49.19	0	593329..593574	+	81	88601813	-	Mhun_0512	-	hypothetical protein
492	 49.07	0	593638..594336	-	232	88601814	-	Mhun_0513	-	hypothetical protein
493	 44.06	0	594654..594998	-	114	88601815	-	Mhun_0514	-	hypothetical protein
494	 43.63	0	595044..595247	-	67	88601816	-	Mhun_0515	-	hypothetical protein
495	 48.65	0	595358..596173	+	271	88601817	-	Mhun_0516	-	aspartate/glutamate/uridylate kinase
496	 42.82	0	596258..596605	+	115	88601818	-	Mhun_0517	-	hypothetical protein
497	 46.33	0	596606..597736	-	376	88601819	-	Mhun_0518	-	sulphate transporter
498	 47.03	0	597723..598817	-	364	88601820	-	Mhun_0519	-	molybdenum-pterin binding domain-containing protein
499	 42.21	0	598825..599511	-	228	88601821	-	Mhun_0520	-	binding-protein-dependent transport systems inner membrane component
500	 48.70	0	599549..600472	-	307	88601822	-	Mhun_0521	-	ABC transporter tungsten-binding protein
501	 44.19	0	600824..601753	+	309	88601823	-	Mhun_0522	-	HhH-GPD
502	 46.57	0	601962..602369	-	135	88601824	-	Mhun_0523	-	molybdopterin biosynthesis MoaE
503	 47.10	0	602372..602647	-	91	88601825	-	Mhun_0524	-	thiamineS
504	 49.40	0	602644..603390	-	248	88601826	-	Mhun_0525	-	UBA/THIF-type NAD/FAD binding fold
505	 49.84	0	603387..604028	-	213	88601827	-	Mhun_0526	-	TfuA-like, core
506	 50.12	0	603982..605202	-	406	88601828	-	Mhun_0527	-	hypothetical protein
507	 43.08	0	605333..605650	+	105	88601829	-	Mhun_0528	-	hypothetical protein
508	 44.65	0	605672..606943	-	423	88601830	-	Mhun_0529	-	hypothetical protein
509	 46.95	0	607028..607585	+	185	88601831	-	Mhun_0530	-	hypothetical protein
510	 43.51	0	607588..607872	-	94	88601832	-	Mhun_0531	-	hypothetical protein
511	 44.83	0	607940..608974	-	344	88601833	-	Mhun_0532	-	hypothetical protein
512	 47.99	0	609033..609455	-	140	88601834	-	Mhun_0533	-	NUDIX hydrolase
513	 47.10	0	609548..610150	+	200	88601835	-	Mhun_0534	-	NAD(P)H dehydrogenase (quinone)
514	 48.61	0	610152..611657	-	501	88601836	-	Mhun_0535	-	protein of unknown function DUF853, NPT hydrolase putative
515	 46.83	0	611849..614581	-	910	88601837	-	Mhun_0536	-	ATPase, E1-E2 type
516	 45.39	0	615043..615498	-	151	88601838	-	Mhun_0537	-	hypothetical protein
517	 44.94	0	615561..615896	-	111	88601839	-	Mhun_0538	-	cupin 2, barrel
518	 38.52	-1	616056..617348	-	430	88601840	-	Mhun_0539	-	putative transcriptional regulator
519	 51.23	+1	617873..619168	-	431	88601841	-	Mhun_0540	-	dihydroorotase, multifunctional complex type
520	 48.20	0	619199..620086	-	295	88601842	-	Mhun_0541	-	hypothetical protein
521	 47.30	0	620154..620597	-	147	88601843	-	Mhun_0542	-	hypothetical protein
522	 42.79	0	620831..621433	+	200	88601844	-	Mhun_0543	-	hypothetical protein
523	 44.05	0	621440..621691	-	83	88601845	-	Mhun_0544	-	hypothetical protein
524	 42.25	0	621854..624544	+	896	88601846	-	Mhun_0545	-	multi-sensor signal transduction histidine kinase
525	 41.03	0	624561..625664	-	367	88601847	-	Mhun_0546	-	hypothetical protein
526	 43.53	0	625820..626731	+	303	88601848	-	Mhun_0547	-	hypothetical protein
527	 45.80	0	626737..627939	-	400	88601849	-	Mhun_0548	-	hypothetical protein
528	 42.95	0	628013..630310	-	765	88601850	-	Mhun_0549	-	multi-sensor signal transduction histidine kinase
529	 45.98	0	630421..633843	+	1140	88601851	-	Mhun_0550	-	ATP-dependent nuclease subunit B-like
530	 46.72	0	633843..637292	+	1149	88601852	-	Mhun_0551	-	UvrD/REP helicase
531	 46.72	0	637314..638807	-	497	88601853	-	Mhun_0552	-	4-alpha-glucanotransferase
532	 44.61	0	638890..641442	-	850	88601854	-	Mhun_0553	-	glycoside hydrolase family protein
533	 41.04	0	641640..642638	+	332	88601855	-	Mhun_0554	-	hypothetical protein
534	 36.51	-1	642677..644410	-	577	88601856	-	Mhun_0555	-	transposase, IS4
535	 48.59	0	644521..645510	+	329	88601857	-	Mhun_0556	-	6-phosphofructokinase
536	 47.69	0	645479..646627	-	382	88601858	-	Mhun_0557	-	ATP-NAD/AcoX kinase
537	 48.42	0	646624..647982	-	452	88601859	-	Mhun_0558	-	tryptophan synthase subunit beta
538	 49.16	0	648082..649332	-	416	88601860	-	Mhun_0559	-	amino acid permease-associated region
539	 39.90	-1	649423..650031	-	202	88601861	-	Mhun_0560	-	hypothetical protein
540	 49.19	0	650142..650816	+	224	88601862	-	Mhun_0561	-	amino acid-binding ACT
541	 49.17	0	650849..651391	+	180	88601863	-	Mhun_0562	-	Sua5/YciO/YrdC/YwlC
542	 48.60	0	651391..652320	+	309	88601864	-	Mhun_0563	-	hypothetical protein
543	 45.78	0	652297..652995	-	232	88601865	-	Mhun_0564	-	hypothetical protein
544	 44.67	0	653027..653317	+	96	88601866	-	Mhun_0565	-	hypothetical protein
545	 49.10	0	653419..655485	-	688	88601867	-	Mhun_0566	-	CoA-binding
546	 48.30	0	655699..657576	+	625	88601868	-	Mhun_0567	-	acetate--CoA ligase
547	 47.59	0	657618..658178	+	186	88601869	-	Mhun_0568	-	transcription factor
548	 50.14	0	658437..659144	-	235	88601870	-	Mhun_0569	-	ribose 5-phosphate isomerase
549	 48.10	0	659189..660028	-	279	88601871	-	Mhun_0570	-	stationary-phase survival protein SurE
550	 48.67	0	660155..661054	+	299	88601872	-	Mhun_0571	-	hypothetical protein
551	 49.57	0	661041..661964	+	307	88601873	-	Mhun_0572	-	hypothetical protein
552	 51.69	+1	661928..662194	+	88	88601874	-	Mhun_0573	-	hypothetical protein
553	 46.67	0	662183..662752	-	189	88601875	-	Mhun_0574	-	hypothetical protein
554	 44.10	0	662825..663214	-	129	88601876	-	Mhun_0575	-	hypothetical protein
555	 48.57	0	664027..664236	+	69	88601877	-	Mhun_0576	-	transcription factor CBF/NF-Y histone
556	 39.91	-1	665099..665326	-	75	88601878	-	Mhun_0577	-	hypothetical protein
557	 33.78	-2	665313..665759	-	148	88601879	-	Mhun_0578	-	hypothetical protein
558	 50.36	0	666527..667084	-	185	88601880	-	Mhun_0579	-	hypothetical protein
559	 51.95	+1	667190..667420	-	76	88601881	-	Mhun_0580	-	hypothetical protein
560	 38.21	-1	668329..668574	+	81	88601882	-	Mhun_0581	-	hypothetical protein
561	 50.39	0	669670..670308	-	212	88601883	-	Mhun_0583	-	hypothetical protein
562	 37.31	-1	671023..671424	-	133	88601884	-	Mhun_0584	-	PilT protein-like
563	 45.24	0	672727..672936	-	69	88601885	-	Mhun_0585	-	hypothetical protein
564	 40.51	-1	672936..673130	-	64	88601886	-	Mhun_0586	-	YcfA-like
565	 46.32	0	673617..673847	-	76	88601887	-	Mhun_0587	-	DNA polymerase, beta-like region
566	 43.86	0	673968..674366	+	132	88601888	-	Mhun_0588	-	hypothetical protein
567	 33.70	-2	674511..674783	+	90	88601889	-	Mhun_0589	-	hypothetical protein
568	 34.82	-2	674864..676474	+	536	88601890	-	Mhun_0590	-	transposase, IS4
569	 48.02	0	677448..679115	-	555	88601891	-	Mhun_0592	-	AMP-dependent synthetase and ligase
570	 40.07	-1	679266..679844	+	192	88601892	-	Mhun_0593	-	transcription factor
571	 49.91	0	679848..682544	-	898	88601893	-	Mhun_0594	-	DEAD/DEAH box helicase-like
572	 46.11	0	682522..683241	-	239	88601894	-	Mhun_0595	-	metallophosphoesterase
573	 46.64	0	683289..684062	-	257	88601895	-	Mhun_0596	-	hypothetical protein
574	 49.42	0	684443..690031	+	1862	88601896	-	Mhun_0597	-	PKD
575	 44.89	0	690146..691633	+	495	88601897	-	Mhun_0598	-	EmrB/QacA family drug resistance transporter
576	 42.18	0	691654..692184	-	176	88601898	-	Mhun_0599	-	heat shock protein Hsp20
577	 38.07	-1	692213..692719	-	168	88601899	-	Mhun_0600	-	hypothetical protein
578	 47.21	0	692864..693850	+	328	88601900	-	Mhun_0601	-	ATPase
579	 46.96	0	693862..694749	+	295	88601901	-	Mhun_0602	-	hypothetical protein
580	 45.53	0	694746..695696	+	316	88601902	-	Mhun_0603	-	von Willebrand factor, type A
581	 46.16	0	695693..697306	+	537	88601903	-	Mhun_0604	-	hypothetical protein
582	 47.78	0	697572..699392	+	606	88601904	-	Mhun_0605	-	hypothetical protein
583	 49.48	0	699453..702641	+	1062	88601905	ileS	Mhun_0606	-	isoleucyl-tRNA synthetase
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.