IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
443	 43.70	0	534127..534531	-	134	88601765	-	Mhun_0462	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
444	 52.12	+1	534572..536269	-	565	88601766	-	Mhun_0463	-	putative signal transduction histidine kinase
445	 51.74	+1	536446..537798	+	450	88601767	-	Mhun_0464	-	major facilitator transporter
446	 52.10	+1	538025..539527	-	500	88601768	-	Mhun_0465	-	pyruvate kinase
447	 52.61	+1	539579..540211	+	210	88601769	-	Mhun_0466	-	iron dependent repressor
448	 50.21	0	540208..542079	+	623	88601770	-	Mhun_0467	-	ferrous iron transport protein B
449	 52.85	+1	542103..543521	+	472	88601771	-	Mhun_0468	-	aldehyde dehydrogenase
450	 52.25	+1	543630..544517	+	295	88601772	-	Mhun_0469	-	hypothetical protein
451	 51.34	+1	544574..545506	+	310	88601773	-	Mhun_0470	-	Allergen V5/Tpx-1 related
452	 48.77	0	545573..546628	+	351	88601774	-	Mhun_0471	-	histidine kinase
453	 49.49	0	546632..547417	-	261	88601775	-	Mhun_0472	-	HAD family hydrolase
454	 50.90	+1	547489..548154	+	221	88601776	-	Mhun_0473	-	excisionase/Xis, DNA-binding
455	 52.38	+1	548269..548709	+	146	88601777	-	Mhun_0474	-	hypothetical protein
456	 40.38	-1	549666..550190	+	174	88601778	-	Mhun_0475	-	hypothetical protein
457	 46.85	0	550324..551085	+	253	88601779	-	Mhun_0476	-	putative methyltransferase
458	 42.43	0	551498..552409	-	303	88601780	-	Mhun_0477	-	restriction endonuclease
459	 36.47	-1	552784..553770	+	328	88601781	-	Mhun_0478	-	transposase, IS4
460	 47.15	0	553838..554749	+	303	88601782	-	Mhun_0479	-	ABC-type branched-chain amino acid transport systems periplasmic component-like
461	 38.27	-1	555093..556652	+	519	88601783	-	Mhun_0480	-	hypothetical protein
462	 43.58	0	556906..557637	-	243	88601784	-	Mhun_0481	-	hypothetical protein
463	 43.47	0	557721..558647	+	308	88601785	-	Mhun_0482	-	hypothetical protein
464	 45.66	0	558666..559022	-	118	88601786	-	Mhun_0483	-	PEGA
465	 34.82	-2	559213..560823	+	536	88601787	-	Mhun_0484	-	transposase, IS4
466	 42.07	0	560941..561249	+	102	88601788	-	Mhun_0485	-	hypothetical protein
467	 49.62	0	561376..563604	+	742	88601789	-	Mhun_0486	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
468	 46.28	0	563690..564925	-	411	88601790	-	Mhun_0487	-	extracellular ligand-binding receptor
469	 47.23	0	564912..567092	-	726	88601791	-	Mhun_0488	-	Legumain
470	 47.57	0	567201..569138	-	645	88601792	-	Mhun_0489	-	von Willebrand factor, type A
471	 40.29	-1	569290..569706	+	138	88601793	-	Mhun_0490	-	nucleotidyltransferase substrate binding protein
472	 40.71	-1	569696..570034	+	112	88601794	-	Mhun_0491	-	hypothetical protein
473	 45.58	0	570132..570719	-	195	88601795	-	Mhun_0492	-	hypothetical protein
474	 43.24	0	570852..572174	-	440	88601796	-	Mhun_0493	-	response regulator receiver sensor signal transduction histidine kinase
475	 47.64	0	572272..574668	-	798	88601797	-	Mhun_0494	-	CheA signal transduction histidine kinases
476	 45.27	0	574677..577064	-	795	88601798	-	Mhun_0495	-	methyl-accepting chemotaxis sensory transducer
477	 46.96	0	577152..578186	-	344	88601799	-	Mhun_0496	-	CheW protein
478	 46.31	0	578384..578776	+	130	88601800	-	Mhun_0497	-	hypothetical protein
479	 48.96	0	578949..580586	+	545	88601801	-	Mhun_0498	-	APHP
480	 46.43	0	580658..583459	+	933	88601802	-	Mhun_0499	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
481	 44.94	0	583500..583973	+	157	88601803	-	Mhun_0500	-	hypothetical protein
482	 49.69	0	583977..584465	-	162	88601804	-	Mhun_0501	-	XRE family transcriptional regulator
483	 49.85	0	584595..585623	+	342	88601805	-	Mhun_0502	-	hydrogenase expression/formation protein HypD
484	 46.81	0	586053..586334	+	93	88601806	-	Mhun_0503	-	hypothetical protein
485	 46.11	0	587634..588275	-	213	88601807	-	Mhun_0504	-	B3/4
486	 36.49	-1	588369..588653	+	94	88601808	-	Mhun_0505	-	hypothetical protein
487	 38.97	-1	588646..589053	+	135	88601809	-	Mhun_0506	-	hypothetical protein
488	 43.71	0	589851..590168	-	105	88601810	-	Mhun_0508	-	hypothetical protein
489	 40.48	-1	591135..591428	-	97	88601811	-	Mhun_0510	-	hypothetical protein
490	 38.98	-1	592230..593186	-	318	88601812	-	Mhun_0511	-	hypothetical protein
491	 49.19	0	593329..593574	+	81	88601813	-	Mhun_0512	-	hypothetical protein
492	 49.07	0	593638..594336	-	232	88601814	-	Mhun_0513	-	hypothetical protein
493	 44.06	0	594654..594998	-	114	88601815	-	Mhun_0514	-	hypothetical protein
494	 43.63	0	595044..595247	-	67	88601816	-	Mhun_0515	-	hypothetical protein
495	 48.65	0	595358..596173	+	271	88601817	-	Mhun_0516	-	aspartate/glutamate/uridylate kinase
496	 42.82	0	596258..596605	+	115	88601818	-	Mhun_0517	-	hypothetical protein
497	 46.33	0	596606..597736	-	376	88601819	-	Mhun_0518	-	sulphate transporter
498	 47.03	0	597723..598817	-	364	88601820	-	Mhun_0519	-	molybdenum-pterin binding domain-containing protein
499	 42.21	0	598825..599511	-	228	88601821	-	Mhun_0520	-	binding-protein-dependent transport systems inner membrane component
500	 48.70	0	599549..600472	-	307	88601822	-	Mhun_0521	-	ABC transporter tungsten-binding protein
501	 44.19	0	600824..601753	+	309	88601823	-	Mhun_0522	-	HhH-GPD
502	 46.57	0	601962..602369	-	135	88601824	-	Mhun_0523	-	molybdopterin biosynthesis MoaE
503	 47.10	0	602372..602647	-	91	88601825	-	Mhun_0524	-	thiamineS
504	 49.40	0	602644..603390	-	248	88601826	-	Mhun_0525	-	UBA/THIF-type NAD/FAD binding fold
505	 49.84	0	603387..604028	-	213	88601827	-	Mhun_0526	-	TfuA-like, core
506	 50.12	0	603982..605202	-	406	88601828	-	Mhun_0527	-	hypothetical protein
507	 43.08	0	605333..605650	+	105	88601829	-	Mhun_0528	-	hypothetical protein
508	 44.65	0	605672..606943	-	423	88601830	-	Mhun_0529	-	hypothetical protein
509	 46.95	0	607028..607585	+	185	88601831	-	Mhun_0530	-	hypothetical protein
510	 43.51	0	607588..607872	-	94	88601832	-	Mhun_0531	-	hypothetical protein
511	 44.83	0	607940..608974	-	344	88601833	-	Mhun_0532	-	hypothetical protein
512	 47.99	0	609033..609455	-	140	88601834	-	Mhun_0533	-	NUDIX hydrolase
513	 47.10	0	609548..610150	+	200	88601835	-	Mhun_0534	-	NAD(P)H dehydrogenase (quinone)
514	 48.61	0	610152..611657	-	501	88601836	-	Mhun_0535	-	protein of unknown function DUF853, NPT hydrolase putative
515	 46.83	0	611849..614581	-	910	88601837	-	Mhun_0536	-	ATPase, E1-E2 type
516	 45.39	0	615043..615498	-	151	88601838	-	Mhun_0537	-	hypothetical protein
517	 44.94	0	615561..615896	-	111	88601839	-	Mhun_0538	-	cupin 2, barrel
518	 38.52	-1	616056..617348	-	430	88601840	-	Mhun_0539	-	putative transcriptional regulator
519	 51.23	+1	617873..619168	-	431	88601841	-	Mhun_0540	-	dihydroorotase, multifunctional complex type
520	 48.20	0	619199..620086	-	295	88601842	-	Mhun_0541	-	hypothetical protein
521	 47.30	0	620154..620597	-	147	88601843	-	Mhun_0542	-	hypothetical protein
522	 42.79	0	620831..621433	+	200	88601844	-	Mhun_0543	-	hypothetical protein
523	 44.05	0	621440..621691	-	83	88601845	-	Mhun_0544	-	hypothetical protein
524	 42.25	0	621854..624544	+	896	88601846	-	Mhun_0545	-	multi-sensor signal transduction histidine kinase
525	 41.03	0	624561..625664	-	367	88601847	-	Mhun_0546	-	hypothetical protein
526	 43.53	0	625820..626731	+	303	88601848	-	Mhun_0547	-	hypothetical protein
527	 45.80	0	626737..627939	-	400	88601849	-	Mhun_0548	-	hypothetical protein
528	 42.95	0	628013..630310	-	765	88601850	-	Mhun_0549	-	multi-sensor signal transduction histidine kinase
529	 45.98	0	630421..633843	+	1140	88601851	-	Mhun_0550	-	ATP-dependent nuclease subunit B-like
530	 46.72	0	633843..637292	+	1149	88601852	-	Mhun_0551	-	UvrD/REP helicase
531	 46.72	0	637314..638807	-	497	88601853	-	Mhun_0552	-	4-alpha-glucanotransferase
532	 44.61	0	638890..641442	-	850	88601854	-	Mhun_0553	-	glycoside hydrolase family protein
533	 41.04	0	641640..642638	+	332	88601855	-	Mhun_0554	-	hypothetical protein
534	 36.51	-1	642677..644410	-	577	88601856	-	Mhun_0555	-	transposase, IS4
535	 48.59	0	644521..645510	+	329	88601857	-	Mhun_0556	-	6-phosphofructokinase
536	 47.69	0	645479..646627	-	382	88601858	-	Mhun_0557	-	ATP-NAD/AcoX kinase
537	 48.42	0	646624..647982	-	452	88601859	-	Mhun_0558	-	tryptophan synthase subunit beta
538	 49.16	0	648082..649332	-	416	88601860	-	Mhun_0559	-	amino acid permease-associated region
539	 39.90	-1	649423..650031	-	202	88601861	-	Mhun_0560	-	hypothetical protein
540	 49.19	0	650142..650816	+	224	88601862	-	Mhun_0561	-	amino acid-binding ACT
541	 49.17	0	650849..651391	+	180	88601863	-	Mhun_0562	-	Sua5/YciO/YrdC/YwlC
542	 48.60	0	651391..652320	+	309	88601864	-	Mhun_0563	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.