IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
379	 28.72	-2	437237..438427	-	396	88601701	-	Mhun_0395	-	glycosyl transferase, group 1
380	 50.27	0	438460..439563	-	367	88601702	-	Mhun_0396	-	UDP-N-acetylglucosamine 2-epimerase
381	 30.11	-2	440758..441129	-	123	88601703	-	Mhun_0397	-	PilT protein-like
382	 38.89	-1	441743..441958	+	71	88601704	-	Mhun_0398	-	hypothetical protein
383	 37.33	-1	441955..442179	+	74	88601705	-	Mhun_0399	-	YcfA-like
384	 46.09	0	444804..445838	-	344	88601706	-	Mhun_0400	-	glycosyl transferase family protein
385	 41.95	0	446177..446443	+	88	88601707	-	Mhun_0401	-	hypothetical protein
386	 48.36	0	446440..448203	+	587	88601708	-	Mhun_0402	-	hypothetical protein
387	 45.21	0	448193..449101	+	302	88601709	-	Mhun_0403	-	hypothetical protein
388	 51.50	+1	449138..450139	+	333	88601710	-	Mhun_0404	-	ATPase
389	 47.74	0	450143..451447	+	434	88601711	-	Mhun_0405	-	hypothetical protein
390	 46.67	0	451447..451926	+	159	88601712	-	Mhun_0406	-	hypothetical protein
391	 49.48	0	451923..452696	+	257	88601713	-	Mhun_0407	-	hypothetical protein
392	 46.75	0	452700..453206	-	168	88601714	-	Mhun_0408	-	hypothetical protein
393	 45.15	0	453289..454278	+	329	88601715	-	Mhun_0409	-	hypothetical protein
394	 36.47	-1	454346..456064	-	572	88601716	-	Mhun_0410	-	hypothetical protein
395	 38.43	-1	456609..457040	-	143	88601717	-	Mhun_0411	-	hypothetical protein
396	 34.82	-2	457196..458806	+	536	88601718	-	Mhun_0412	-	transposase, IS4
397	 41.39	0	459830..461008	+	392	88601719	-	Mhun_0414	-	AAA family ATPase
398	 40.53	-1	461180..462610	+	476	88601720	-	Mhun_0415	-	ATPase
399	 37.30	-1	463008..464645	-	545	88601721	-	Mhun_0416	-	transposase
400	 40.82	0	464804..466552	+	582	88601722	-	Mhun_0417	-	PKD
401	 44.23	0	466810..468690	+	626	88601723	-	Mhun_0418	-	PKD
402	 37.13	-1	468725..470461	-	578	88601724	-	Mhun_0419	-	hypothetical protein
403	 43.76	0	470709..474419	+	1236	88601725	-	Mhun_0420	-	PKD
404	 39.42	-1	474800..477658	+	952	88601726	-	Mhun_0421	-	PKD
405	 37.06	-1	477806..480595	+	929	88601727	-	Mhun_0422	-	PKD
406	 45.74	0	480850..484137	+	1095	88601728	-	Mhun_0423	-	PKD
407	 48.16	0	484665..488543	+	1292	88601729	-	Mhun_0424	-	PKD
408	 48.59	0	488545..492240	+	1231	88601730	-	Mhun_0425	-	PKD
409	 50.51	0	492247..494697	+	816	88601731	-	Mhun_0426	-	PKD
410	 52.28	+1	494733..495302	+	189	88601732	-	Mhun_0427	-	hypothetical protein
411	 37.23	-1	495362..495823	+	153	88601733	-	Mhun_0428	-	DNA polymerase, beta-like region
412	 36.62	-1	495823..496248	+	141	88601734	-	Mhun_0429	-	hypothetical protein
413	 46.73	0	499045..500022	-	325	88601735	-	Mhun_0431	-	alpha/beta hydrolase fold
414	 41.21	0	500228..503236	-	1002	88601736	-	Mhun_0432	-	hypothetical protein
415	 41.19	0	504957..505529	-	190	88601737	-	Mhun_0434	-	hypothetical protein
416	 49.41	0	505608..507374	-	588	88601738	-	Mhun_0435	-	putative ATPase RIL
417	 48.51	0	507381..507749	-	122	88601739	-	Mhun_0436	-	hypothetical protein
418	 50.53	0	507805..509688	+	627	88601740	-	Mhun_0437	-	hypothetical protein
419	 51.46	+1	509685..510710	+	341	88601741	-	Mhun_0438	-	putative translation factor pelota
420	 34.82	-2	510992..512602	-	536	88601742	-	Mhun_0439	-	transposase, IS4
421	 47.65	0	512664..514724	+	686	88601743	-	Mhun_0440	-	putative PAS/PAC sensor protein
422	 48.18	0	514734..515528	-	264	88601744	-	Mhun_0441	-	exodeoxyribonuclease III (xth)
423	 50.90	+1	515533..516255	-	240	88601745	-	Mhun_0442	-	hypothetical protein
424	 51.04	+1	516386..516577	+	63	88601746	-	Mhun_0443	-	hypothetical protein
425	 47.57	0	516611..517558	-	315	88601747	-	Mhun_0444	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
426	 47.73	0	517637..518761	-	374	88601748	cdc6	Mhun_0445	-	cell division control protein 6
427	 46.19	0	518931..519809	+	292	88601749	-	Mhun_0446	-	hypothetical protein
428	 50.26	0	519814..520971	-	385	88601750	-	Mhun_0447	-	phosphonopyruvate decarboxylase-related protein
429	 49.51	0	520973..521899	-	308	88601751	-	Mhun_0448	-	NAD-dependent epimerase/dehydratase
430	 52.97	+1	521943..522818	+	291	88601752	-	Mhun_0449	-	hypothetical protein
431	 51.38	+1	522859..523401	+	180	88601753	-	Mhun_0450	-	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate
432	 51.94	+1	523404..523661	+	85	88601754	-	Mhun_0451	-	2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate
433	 49.61	0	523662..524822	+	386	88601755	-	Mhun_0452	-	pyruvate flavodoxin/ferredoxin oxidoreductase-like
434	 49.66	0	524824..525711	+	295	88601756	-	Mhun_0453	-	thiamine pyrophosphate enzyme-like TPP-binding
435	 48.13	0	525786..527759	+	657	88601757	-	Mhun_0454	-	signal transduction histidine kinase
436	 50.07	0	527756..528472	+	238	88601758	-	Mhun_0455	-	response regulator receiver domain-containing protein
437	 50.86	+1	528492..528896	+	134	88601759	-	Mhun_0456	-	GCN5-related N-acetyltransferase
438	 48.41	0	528918..529925	+	335	88601760	-	Mhun_0457	-	hypothetical protein
439	 40.77	0	530151..530486	+	111	88601761	-	Mhun_0458	-	Zinc finger, AN1-type
440	 39.10	-1	530904..531926	-	340	88601762	-	Mhun_0459	-	hypothetical protein
441	 48.45	0	532369..533301	-	310	88601763	-	Mhun_0460	-	ADP-ribosylation/crystallin J1
442	 46.34	0	533337..534074	-	245	88601764	-	Mhun_0461	-	ABC transporter related
443	 43.70	0	534127..534531	-	134	88601765	-	Mhun_0462	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
444	 52.12	+1	534572..536269	-	565	88601766	-	Mhun_0463	-	putative signal transduction histidine kinase
445	 51.74	+1	536446..537798	+	450	88601767	-	Mhun_0464	-	major facilitator transporter
446	 52.10	+1	538025..539527	-	500	88601768	-	Mhun_0465	-	pyruvate kinase
447	 52.61	+1	539579..540211	+	210	88601769	-	Mhun_0466	-	iron dependent repressor
448	 50.21	0	540208..542079	+	623	88601770	-	Mhun_0467	-	ferrous iron transport protein B
449	 52.85	+1	542103..543521	+	472	88601771	-	Mhun_0468	-	aldehyde dehydrogenase
450	 52.25	+1	543630..544517	+	295	88601772	-	Mhun_0469	-	hypothetical protein
451	 51.34	+1	544574..545506	+	310	88601773	-	Mhun_0470	-	Allergen V5/Tpx-1 related
452	 48.77	0	545573..546628	+	351	88601774	-	Mhun_0471	-	histidine kinase
453	 49.49	0	546632..547417	-	261	88601775	-	Mhun_0472	-	HAD family hydrolase
454	 50.90	+1	547489..548154	+	221	88601776	-	Mhun_0473	-	excisionase/Xis, DNA-binding
455	 52.38	+1	548269..548709	+	146	88601777	-	Mhun_0474	-	hypothetical protein
456	 40.38	-1	549666..550190	+	174	88601778	-	Mhun_0475	-	hypothetical protein
457	 46.85	0	550324..551085	+	253	88601779	-	Mhun_0476	-	putative methyltransferase
458	 42.43	0	551498..552409	-	303	88601780	-	Mhun_0477	-	restriction endonuclease
459	 36.47	-1	552784..553770	+	328	88601781	-	Mhun_0478	-	transposase, IS4
460	 47.15	0	553838..554749	+	303	88601782	-	Mhun_0479	-	ABC-type branched-chain amino acid transport systems periplasmic component-like
461	 38.27	-1	555093..556652	+	519	88601783	-	Mhun_0480	-	hypothetical protein
462	 43.58	0	556906..557637	-	243	88601784	-	Mhun_0481	-	hypothetical protein
463	 43.47	0	557721..558647	+	308	88601785	-	Mhun_0482	-	hypothetical protein
464	 45.66	0	558666..559022	-	118	88601786	-	Mhun_0483	-	PEGA
465	 34.82	-2	559213..560823	+	536	88601787	-	Mhun_0484	-	transposase, IS4
466	 42.07	0	560941..561249	+	102	88601788	-	Mhun_0485	-	hypothetical protein
467	 49.62	0	561376..563604	+	742	88601789	-	Mhun_0486	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
468	 46.28	0	563690..564925	-	411	88601790	-	Mhun_0487	-	extracellular ligand-binding receptor
469	 47.23	0	564912..567092	-	726	88601791	-	Mhun_0488	-	Legumain
470	 47.57	0	567201..569138	-	645	88601792	-	Mhun_0489	-	von Willebrand factor, type A
471	 40.29	-1	569290..569706	+	138	88601793	-	Mhun_0490	-	nucleotidyltransferase substrate binding protein
472	 40.71	-1	569696..570034	+	112	88601794	-	Mhun_0491	-	hypothetical protein
473	 45.58	0	570132..570719	-	195	88601795	-	Mhun_0492	-	hypothetical protein
474	 43.24	0	570852..572174	-	440	88601796	-	Mhun_0493	-	response regulator receiver sensor signal transduction histidine kinase
475	 47.64	0	572272..574668	-	798	88601797	-	Mhun_0494	-	CheA signal transduction histidine kinases
476	 45.27	0	574677..577064	-	795	88601798	-	Mhun_0495	-	methyl-accepting chemotaxis sensory transducer
477	 46.96	0	577152..578186	-	344	88601799	-	Mhun_0496	-	CheW protein
478	 46.31	0	578384..578776	+	130	88601800	-	Mhun_0497	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.