IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
311	 44.59	0	362567..363748	+	393	88601633	-	Mhun_0322	-	hypothetical protein
312	 44.11	0	364379..365074	+	231	88601634	-	Mhun_0323	-	GCN5-related N-acetyltransferase
313	 34.55	-2	365127..365621	+	164	88601635	-	Mhun_0324	-	hypothetical protein
314	 41.94	0	365625..366182	+	185	88601636	-	Mhun_0325	-	histidine kinase
315	 48.42	0	366497..367822	+	441	88601637	-	Mhun_0326	-	extracellular ligand-binding receptor
316	 46.94	0	367851..368732	+	293	88601638	-	Mhun_0327	-	inner-membrane translocator
317	 47.55	0	368729..369706	+	325	88601639	-	Mhun_0328	-	inner-membrane translocator
318	 46.90	0	369716..370408	-	230	88601640	-	Mhun_0329	-	ABC transporter related
319	 50.14	0	370409..371146	-	245	88601641	-	Mhun_0330	-	ABC transporter related
320	 46.06	0	371278..373383	-	701	88601642	-	Mhun_0331	-	methyl-accepting chemotaxis sensory transducer
321	 50.37	0	373515..376232	+	905	88601643	-	Mhun_0332	-	ATPase, E1-E2 type
322	 32.51	-2	376514..376756	+	80	88601644	-	Mhun_0333	-	hypothetical protein
323	 32.11	-2	376753..377160	+	135	88601645	-	Mhun_0334	-	PilT protein-like
324	 48.40	0	377214..378122	+	302	88601646	-	Mhun_0335	-	hypothetical protein
325	 46.78	0	378254..379108	+	284	88601647	-	Mhun_0336	-	hypothetical protein
326	 40.63	-1	379407..380105	+	232	88601648	-	Mhun_0337	-	hypothetical protein
327	 40.76	-1	380102..380842	+	246	88601649	-	Mhun_0338	-	hypothetical protein
328	 47.13	0	380832..381179	+	115	88601650	-	Mhun_0339	-	nitrogen regulatory protein P-II (GlnB, GlnK)
329	 44.58	0	381285..382013	-	242	88601651	-	Mhun_0340	-	regulatory protein, Crp
330	 44.18	0	382434..383309	-	291	88601652	-	Mhun_0341	-	heat shock protein HtpX
331	 50.44	0	383382..386024	+	880	88601653	-	Mhun_0342	-	calcium-translocating P-type ATPase, PMCA-type
332	 44.06	0	386019..387332	-	437	88601654	-	Mhun_0343	-	hypothetical protein
333	 45.31	0	387414..388448	+	344	88601655	-	Mhun_0344	-	cation diffusion facilitator family transporter
334	 43.18	0	388485..388748	+	87	88601656	-	Mhun_0345	-	hypothetical protein
335	 47.71	0	388764..391058	+	764	88601657	-	Mhun_0346	-	peptidase S9B, dipeptidylpeptidase IV-like
336	 42.01	0	391106..393226	-	706	88601658	-	Mhun_0347	-	methyl-accepting chemotaxis sensory transducer
337	 44.93	0	393572..394123	-	183	88601659	-	Mhun_0348	-	hypothetical protein
338	 45.05	0	394211..394756	-	181	88601660	-	Mhun_0349	-	Signal transduction histidine kinase-like
339	 34.82	-2	394869..396479	-	536	88601661	-	Mhun_0350	-	transposase, IS4
340	 43.94	0	396781..397440	+	219	88601662	-	Mhun_0351	-	hypothetical protein
341	 51.27	+1	397686..399575	-	629	88601663	-	Mhun_0352	-	acetate--CoA ligase
342	 46.42	0	400048..401247	-	399	88601664	-	Mhun_0353	-	peptidase M24
343	 47.03	0	401339..403783	+	814	88601665	-	Mhun_0354	-	methyl-accepting chemotaxis sensory transducer
344	 50.25	0	403857..404654	+	265	88601666	-	Mhun_0355	-	4Fe-4S ferredoxin, iron-sulfur binding
345	 50.00	0	405005..405316	+	103	88601667	-	Mhun_0356	-	RNA recognition motif-containing protein
346	 45.88	0	405373..406161	-	262	88601668	-	Mhun_0357	-	ABC transporter related
347	 44.64	0	406166..407881	-	571	88601669	-	Mhun_0358	-	multi-sensor signal transduction histidine kinase
348	 45.30	0	408043..409095	+	350	88601670	-	Mhun_0359	-	hypothetical protein
349	 48.59	0	409190..409615	+	141	88601671	-	Mhun_0360	-	hypothetical protein
350	 45.35	0	409599..410039	-	146	88601672	-	Mhun_0361	-	hypothetical protein
351	 40.82	0	411361..411507	+	48	88601673	-	Mhun_0364	-	hypothetical protein
352	 47.34	0	412171..412377	+	68	88601674	-	Mhun_0365	-	transcription factor CBF/NF-Y histone
353	 32.84	-2	412885..413490	-	201	88601675	-	Mhun_0366	-	hypothetical protein
354	 36.45	-1	413454..413870	-	138	88601676	-	Mhun_0367	-	hypothetical protein
355	 36.42	-1	414108..414755	-	215	88601677	-	Mhun_0368	-	hypothetical protein
356	 33.73	-2	415059..415556	+	165	88601678	-	Mhun_0369	-	hypothetical protein
357	 50.28	0	415615..415974	+	119	88601679	-	Mhun_0370	-	UDP-N-acetylglucosamine 2-epimerase
358	 37.75	-1	416080..416328	+	82	88601680	-	Mhun_0371	-	hypothetical protein
359	 31.62	-2	416835..417185	+	116	88601681	-	Mhun_0372	-	hypothetical protein
360	 34.71	-2	417187..417477	+	96	88601682	-	Mhun_0373	-	plasmid stabilization system protein
361	 37.81	-1	418354..418554	+	66	88601683	-	Mhun_0375	-	hypothetical protein
362	 39.64	-1	419792..420013	-	73	88601684	-	Mhun_0377	-	YcfA-like
363	 36.53	-1	420010..420228	-	72	88601685	-	Mhun_0378	-	hypothetical protein
364	 36.43	-1	420972..421262	+	96	88601686	-	Mhun_0380	-	hypothetical protein
365	 34.23	-2	421249..421692	+	147	88601687	-	Mhun_0381	-	hypothetical protein
366	 51.17	+1	421723..422793	+	356	88601688	-	Mhun_0382	-	UDP-N-acetylglucosamine 2-epimerase
367	 39.36	-1	422783..423811	+	342	88601689	-	Mhun_0383	-	hypothetical protein
368	 29.59	-2	423926..424966	+	346	88601690	-	Mhun_0384	-	ATP-grasp enzyme-like
369	 28.36	-2	424956..425639	+	227	88601691	-	Mhun_0385	-	PHP-like
370	 29.90	-2	425626..426585	-	319	88601692	-	Mhun_0386	-	hypothetical protein
371	 34.82	-2	426614..428224	-	536	88601693	-	Mhun_0387	-	transposase, IS4
372	 32.90	-2	428466..429857	-	463	88601694	-	Mhun_0388	-	polysaccharide biosynthesis protein
373	 36.05	-1	430390..431124	-	244	88601695	-	Mhun_0389	-	hypothetical protein
374	 26.15	-2	431815..433011	+	398	88601696	-	Mhun_0390	-	hypothetical protein
375	 31.80	-2	433027..434136	-	369	88601697	-	Mhun_0391	-	glycosyl transferase, group 1
376	 28.94	-2	434208..435641	-	477	88601698	-	Mhun_0392	-	hypothetical protein
377	 36.45	-1	435859..436275	+	138	88601699	-	Mhun_0393	-	hypothetical protein
378	 32.84	-2	436239..436844	+	201	88601700	-	Mhun_0394	-	hypothetical protein
379	 28.72	-2	437237..438427	-	396	88601701	-	Mhun_0395	-	glycosyl transferase, group 1
380	 50.27	0	438460..439563	-	367	88601702	-	Mhun_0396	-	UDP-N-acetylglucosamine 2-epimerase
381	 30.11	-2	440758..441129	-	123	88601703	-	Mhun_0397	-	PilT protein-like
382	 38.89	-1	441743..441958	+	71	88601704	-	Mhun_0398	-	hypothetical protein
383	 37.33	-1	441955..442179	+	74	88601705	-	Mhun_0399	-	YcfA-like
384	 46.09	0	444804..445838	-	344	88601706	-	Mhun_0400	-	glycosyl transferase family protein
385	 41.95	0	446177..446443	+	88	88601707	-	Mhun_0401	-	hypothetical protein
386	 48.36	0	446440..448203	+	587	88601708	-	Mhun_0402	-	hypothetical protein
387	 45.21	0	448193..449101	+	302	88601709	-	Mhun_0403	-	hypothetical protein
388	 51.50	+1	449138..450139	+	333	88601710	-	Mhun_0404	-	ATPase
389	 47.74	0	450143..451447	+	434	88601711	-	Mhun_0405	-	hypothetical protein
390	 46.67	0	451447..451926	+	159	88601712	-	Mhun_0406	-	hypothetical protein
391	 49.48	0	451923..452696	+	257	88601713	-	Mhun_0407	-	hypothetical protein
392	 46.75	0	452700..453206	-	168	88601714	-	Mhun_0408	-	hypothetical protein
393	 45.15	0	453289..454278	+	329	88601715	-	Mhun_0409	-	hypothetical protein
394	 36.47	-1	454346..456064	-	572	88601716	-	Mhun_0410	-	hypothetical protein
395	 38.43	-1	456609..457040	-	143	88601717	-	Mhun_0411	-	hypothetical protein
396	 34.82	-2	457196..458806	+	536	88601718	-	Mhun_0412	-	transposase, IS4
397	 41.39	0	459830..461008	+	392	88601719	-	Mhun_0414	-	AAA family ATPase
398	 40.53	-1	461180..462610	+	476	88601720	-	Mhun_0415	-	ATPase
399	 37.30	-1	463008..464645	-	545	88601721	-	Mhun_0416	-	transposase
400	 40.82	0	464804..466552	+	582	88601722	-	Mhun_0417	-	PKD
401	 44.23	0	466810..468690	+	626	88601723	-	Mhun_0418	-	PKD
402	 37.13	-1	468725..470461	-	578	88601724	-	Mhun_0419	-	hypothetical protein
403	 43.76	0	470709..474419	+	1236	88601725	-	Mhun_0420	-	PKD
404	 39.42	-1	474800..477658	+	952	88601726	-	Mhun_0421	-	PKD
405	 37.06	-1	477806..480595	+	929	88601727	-	Mhun_0422	-	PKD
406	 45.74	0	480850..484137	+	1095	88601728	-	Mhun_0423	-	PKD
407	 48.16	0	484665..488543	+	1292	88601729	-	Mhun_0424	-	PKD
408	 48.59	0	488545..492240	+	1231	88601730	-	Mhun_0425	-	PKD
409	 50.51	0	492247..494697	+	816	88601731	-	Mhun_0426	-	PKD
410	 52.28	+1	494733..495302	+	189	88601732	-	Mhun_0427	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.