IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2996	 46.59	0	3366840..3367820	+	326	88604318	-	Mhun_3090	-	polysaccharide biosynthesis protein CapD
2997	 41.37	0	3367843..3368178	-	111	88604319	-	Mhun_3091	-	DNA polymerase, beta-like region
2998	 37.83	-1	3368160..3368537	-	125	88604320	-	Mhun_3092	-	HEPN
2999	 46.17	0	3368737..3369912	+	391	88604321	-	Mhun_3093	-	DegT/DnrJ/EryC1/StrS aminotransferase
3000	 46.55	0	3369956..3370636	+	226	88604322	-	Mhun_3094	-	acylneuraminate cytidylyltransferase
3001	 30.62	-2	3370723..3371349	+	208	88604323	-	Mhun_3095	-	hypothetical protein
3002	 44.98	0	3371484..3372977	+	497	88604324	-	Mhun_3096	-	GCN5-related N-acetyltransferase
3003	 37.48	-1	3372991..3373617	+	208	88604325	-	Mhun_3097	-	hypothetical protein
3004	 47.41	0	3373630..3374673	+	347	88604326	-	Mhun_3098	-	N-acylneuraminate-9-phosphate synthase
3005	 35.90	-1	3374705..3376615	-	636	88604327	-	Mhun_3099	-	hypothetical protein
3006	 43.67	0	3376702..3377688	+	328	88604328	-	Mhun_3100	-	dTDP-glucose 4,6-dehydratase
3007	 41.52	0	3377773..3377943	+	56	88604329	-	Mhun_3101	-	hypothetical protein
3008	 36.92	-1	3377940..3378329	+	129	88604330	-	Mhun_3102	-	YcfA-like
3009	 39.82	-1	3378422..3378976	+	184	88604331	-	Mhun_3103	-	hypothetical protein
3010	 32.84	-2	3379045..3379650	-	201	88604332	-	Mhun_3104	-	hypothetical protein
3011	 36.45	-1	3379614..3380030	-	138	88604333	-	Mhun_3105	-	hypothetical protein
3012	 42.84	0	3380185..3381120	+	311	88604334	-	Mhun_3106	-	generic methyltransferase
3013	 46.29	0	3381117..3381857	+	246	88604335	-	Mhun_3107	-	nucleotidyl transferase
3014	 43.87	0	3381854..3383020	+	388	88604336	-	Mhun_3108	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
3015	 35.16	-2	3383156..3383539	+	127	88604337	-	Mhun_3109	-	phosphopantethiene-protein transferase domain-contain protein
3016	 35.83	-1	3383541..3383780	+	79	88604338	-	Mhun_3110	-	acyl carrier protein
3017	 40.49	-1	3384020..3385276	+	418	88604339	-	Mhun_3111	-	AMP-dependent synthetase and ligase
3018	 39.15	-1	3385266..3386399	+	377	88604340	-	Mhun_3112	-	acyl-protein synthetase, LuxE
3019	 39.92	-1	3386396..3387685	+	429	88604341	-	Mhun_3113	-	acyl protein synthase/acyl-CoA reductase RfbN
3020	 38.92	-1	3387699..3388307	+	202	88604342	-	Mhun_3114	-	short-chain dehydrogenase/reductase SDR
3021	 37.42	-1	3388462..3390099	+	545	88604343	-	Mhun_3115	-	transposase
3022	 39.57	-1	3390096..3391619	-	507	88604344	-	Mhun_3116	-	hypothetical protein
3023	 30.77	-2	3391947..3392687	-	246	88604345	-	Mhun_3118	-	methyltransferase type 12
3024	 30.91	-2	3393021..3393680	+	219	88604346	-	Mhun_3119	-	hexapaptide repeat-containing transferase
3025	 29.89	-2	3393719..3394414	+	231	88604347	-	Mhun_3120	-	hypothetical protein
3026	 31.01	-2	3394401..3395348	+	315	88604348	-	Mhun_3121	-	glycosyl transferase family protein
3027	 48.10	0	3396124..3396888	-	254	88604349	-	Mhun_3122	-	Integrins alpha chain
3028	 36.47	-1	3396948..3397934	-	328	88604350	-	Mhun_3123	-	transposase, IS4
3029	 42.96	0	3397846..3399309	-	487	88604351	-	Mhun_3124	-	RNA-directed DNA polymerase
3030	 34.82	-2	3400228..3401838	-	536	88604352	-	Mhun_3125	-	transposase, IS4
3031	 47.21	0	3402208..3405696	-	1162	88604353	-	Mhun_3126	-	PKD
3032	 39.30	-1	3406735..3407421	+	228	88604354	-	Mhun_3127	-	hypothetical protein
3033	 39.41	-1	3407575..3408282	+	235	88604355	-	Mhun_3128	-	hypothetical protein
3034	 39.56	-1	3408436..3409110	+	224	88604356	-	Mhun_3129	-	hypothetical protein
3035	 49.57	0	3410780..3414037	-	1085	88604357	-	Mhun_3130	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
3036	 47.37	0	3414332..3417622	-	1096	88604358	-	Mhun_3131	-	peptidase C1A, papain
3037	 50.12	0	3417886..3418290	-	134	88604359	-	Mhun_3132	-	tetratricopeptide TPR_2
3038	 36.51	-1	3419191..3420924	-	577	88604360	-	Mhun_3134	-	transposase, IS4
3039	 37.74	-1	3422033..3422668	+	211	88604361	-	Mhun_3135	-	hypothetical protein
3040	 46.48	0	3423278..3424258	+	326	88604362	-	Mhun_3136	-	hypothetical protein
3041	 46.36	0	3424282..3425394	+	370	88604363	-	Mhun_3137	-	HEAT repeat-containing PBS lyase
3042	 35.89	-1	3425391..3427697	+	768	88604364	-	Mhun_3138	-	hypothetical protein
3043	 42.04	0	3427947..3428486	+	179	88604365	-	Mhun_3139	-	flagellin
3044	 42.30	0	3428590..3429102	+	170	88604366	-	Mhun_3140	-	flagellin
3045	 35.22	-2	3429461..3430414	-	317	88604367	-	Mhun_3141	-	tetratricopeptide TPR_2
3046	 35.65	-2	3430501..3432312	+	603	88604368	-	Mhun_3142	-	hypothetical protein
3047	 31.34	-2	3432427..3433077	-	216	88604369	-	Mhun_3143	-	hypothetical protein
3048	 31.62	-2	3433084..3433842	-	252	88604370	-	Mhun_3144	-	hypothetical protein
3049	 31.93	-2	3433839..3435122	-	427	88604371	-	Mhun_3145	-	glycosyl transferase, group 1
3050	 30.74	-2	3437099..3438526	+	475	88604372	-	Mhun_3147	-	polysaccharide biosynthesis protein
3051	 42.89	0	3440410..3442836	+	808	88604373	-	Mhun_3149	-	hypothetical protein
3052	 42.55	0	3443494..3445044	-	516	88604374	-	Mhun_3150	-	hypothetical protein
3053	 35.44	-2	3446545..3447207	+	220	88604375	-	Mhun_3152	-	hexapaptide repeat-containing transferase
3054	 37.02	-1	3447214..3448080	+	288	88604376	-	Mhun_3153	-	hexapaptide repeat-containing transferase
3055	 38.47	-1	3448073..3448831	-	252	88604377	-	Mhun_3154	-	hypothetical protein
3056	 39.73	-1	3448854..3449603	-	249	88604378	-	Mhun_3155	-	short-chain dehydrogenase/reductase SDR
3057	 43.44	0	3449600..3450895	-	431	88604379	-	Mhun_3156	-	acyl protein synthase/acyl-CoA reductase RfbN
3058	 43.88	0	3450885..3452003	-	372	88604380	-	Mhun_3157	-	acyl-protein synthetase, LuxE
3059	 40.33	-1	3451984..3453456	-	490	88604381	-	Mhun_3158	-	AMP-dependent synthetase and ligase
3060	 30.74	-2	3453460..3453690	-	76	88604382	-	Mhun_3159	-	acyl carrier protein
3061	 33.58	-2	3453690..3454100	-	136	88604383	-	Mhun_3160	-	phosphopantethiene-protein transferase domain-contain protein
3062	 42.38	0	3454133..3455083	-	316	88604384	-	Mhun_3161	-	glycosyl transferase family protein
3063	 39.62	-1	3455323..3455688	+	121	88604385	-	Mhun_3162	-	hypothetical protein
3064	 42.89	0	3455744..3457438	-	564	88604386	-	Mhun_3163	-	hypothetical protein
3065	 40.37	-1	3457644..3458297	+	217	88604387	-	Mhun_3164	-	acylphosphatase-like protein
3066	 46.40	0	3458324..3459877	-	517	88604388	-	Mhun_3165	-	hypothetical protein
3067	 49.86	0	3459975..3461426	+	483	88604389	-	Mhun_3166	-	putative PAS/PAC sensor protein
3068	 50.02	0	3461617..3463653	+	678	88604390	-	Mhun_3167	-	multi-sensor signal transduction histidine kinase
3069	 51.72	+1	3463682..3464671	-	329	88604391	-	Mhun_3168	-	type II secretion system protein
3070	 51.29	+1	3464674..3465564	-	296	88604392	-	Mhun_3169	-	type II secretion system protein
3071	 50.16	0	3465596..3467425	-	609	88604393	-	Mhun_3170	-	type II secretion system protein E
3072	 50.80	+1	3467602..3468225	+	207	88604394	-	Mhun_3171	-	hypothetical protein
3073	 48.39	0	3468227..3468598	-	123	88604395	-	Mhun_3172	-	hypothetical protein
3074	 53.26	+1	3468603..3469139	-	178	88604396	-	Mhun_3173	-	L-fuculose phosphate aldolase
3075	 49.62	0	3469143..3469793	-	216	88604397	-	Mhun_3174	-	NADPH-dependent F420 reductase
3076	 47.99	0	3469795..3470067	-	90	88604398	-	Mhun_3175	-	thioredoxin-related
3077	 50.10	0	3470120..3471574	-	484	88604399	secD	Mhun_3176	-	preprotein translocase subunit SecD
3078	 47.21	0	3471575..3472453	-	292	88604400	-	Mhun_3177	-	preprotein translocase subunit SecF
3079	 50.16	0	3472681..3472989	+	102	88604401	-	Mhun_3178	-	hypothetical protein
3080	 46.79	0	3473038..3473349	+	103	88604402	-	Mhun_3179	-	hypothetical protein
3081	 50.25	0	3473349..3473756	+	135	88604403	-	Mhun_3180	-	hypothetical protein
3082	 53.21	+1	3473766..3475199	+	477	88604404	-	Mhun_3181	-	hypothetical protein
3083	 54.70	+1	3475200..3475784	+	194	88604405	-	Mhun_3182	-	hypothetical protein
3084	 51.06	+1	3475816..3476238	+	140	88604406	-	Mhun_3183	-	hypothetical protein
3085	 50.97	+1	3476246..3477226	+	326	88604407	-	Mhun_3184	-	biotin--acetyl-CoA-carboxylase ligase
3086	 52.33	+1	3477228..3477764	+	178	88604408	-	Mhun_3185	-	BioY protein
3087	 52.36	+1	3477761..3478459	+	232	88604409	-	Mhun_3186	-	ABC transporter related
3088	 54.47	+1	3478456..3479160	+	234	88604410	-	Mhun_3187	-	ABC transporter related
3089	 52.10	+1	3479142..3479807	+	221	88604411	-	Mhun_3188	-	hypothetical protein
3090	 51.67	+1	3479839..3481572	+	577	88604412	-	Mhun_3189	-	pyruvate carboxylase subunit B
3091	 53.08	+1	3481569..3483047	+	492	88604413	-	Mhun_3190	-	pyruvate carboxylase subunit A
3092	 49.15	0	3483047..3483280	+	77	88604414	-	Mhun_3191	-	5-nitroimidazole antibiotic resistance protein
3093	 52.74	+1	3483277..3483513	+	78	88604415	-	Mhun_3192	-	hypothetical protein
3094	 48.38	0	3483493..3486402	-	969	88604416	-	Mhun_3193	-	putative PAS/PAC sensor protein
3095	 50.60	0	3486825..3487160	-	111	88604417	-	Mhun_3194	-	CutA1 divalent ion tolerance protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.