IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2921	 50.83	+1	3291984..3292406	+	140	88604243	-	Mhun_3015	-	30S ribosomal protein S19e
2922	 50.15	0	3292425..3292757	+	110	88604244	-	Mhun_3016	-	hypothetical protein
2923	 51.01	+1	3292754..3293347	+	197	88604245	-	Mhun_3017	-	PP-loop
2924	 52.29	+1	3293355..3293507	+	50	88604246	rpl39e	Mhun_3018	-	50S ribosomal protein L39e
2925	 53.79	+1	3293513..3293776	+	87	88604247	-	Mhun_3019	-	50S ribosomal protein L31e
2926	 49.85	0	3293777..3294442	+	221	88604248	-	Mhun_3020	-	translation initiation factor IF-6
2927	 51.11	+1	3294645..3295094	+	149	88604249	-	Mhun_3021	-	prefoldin alpha subunit
2928	 48.12	0	3295130..3296191	+	353	88604250	-	Mhun_3022	-	signal recognition particle-docking protein FtsY
2929	 52.82	+1	3296191..3297504	+	437	88604251	-	Mhun_3023	-	signal recognition particle protein Srp54
2930	 50.26	0	3297504..3298088	+	194	88604252	-	Mhun_3024	-	hypothetical protein
2931	 49.60	0	3298079..3299326	+	415	88604253	-	Mhun_3025	-	hypothetical protein
2932	 50.34	0	3299313..3299606	+	97	88604254	-	Mhun_3026	-	50S ribosomal protein L21e
2933	 45.48	0	3299628..3299981	+	117	88604255	-	Mhun_3027	-	RNA polymerase Rpb4
2934	 46.17	0	3299992..3300552	+	186	88604256	-	Mhun_3028	-	hypothetical protein
2935	 50.71	0	3300549..3301319	+	256	88604257	-	Mhun_3029	-	dimethyladenosine transferase
2936	 48.89	0	3301369..3301863	+	164	88604258	-	Mhun_3030	-	putative methylase
2937	 49.74	0	3301869..3302453	-	194	88604259	-	Mhun_3031	-	sugar isomerase (SIS)
2938	 50.34	0	3302549..3304036	-	495	88604260	-	Mhun_3032	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2939	 46.12	0	3304134..3305189	-	351	88604261	-	Mhun_3033	-	hypothetical protein
2940	 49.09	0	3305374..3306528	+	384	88604262	-	Mhun_3034	-	arsenite permease
2941	 48.44	0	3306608..3306991	+	127	88604263	-	Mhun_3035	-	response regulator receiver domain-containing protein
2942	 41.67	0	3307354..3307557	-	67	88604264	-	Mhun_3036	-	XRE family transcriptional regulator
2943	 46.81	0	3307547..3307969	-	140	88604265	-	Mhun_3037	-	hypothetical protein
2944	 48.24	0	3308080..3310716	+	878	88604266	-	Mhun_3038	-	signal transduction histidine kinase
2945	 50.94	+1	3310713..3311780	+	355	88604267	-	Mhun_3039	-	response regulator receiver sensor signal transduction histidine kinase
2946	 47.73	0	3311793..3312188	+	131	88604268	-	Mhun_3040	-	response regulator receiver domain-containing protein
2947	 48.68	0	3312216..3312593	+	125	88604269	-	Mhun_3041	-	response regulator receiver domain-containing protein
2948	 49.18	0	3312649..3313935	-	428	88604270	-	Mhun_3042	-	PKD
2949	 48.37	0	3313979..3316099	+	706	88604271	-	Mhun_3043	-	endothelin-converting protein 1
2950	 42.95	0	3316104..3316550	+	148	88604272	-	Mhun_3044	-	hypothetical protein
2951	 48.87	0	3316543..3318093	-	516	88604273	-	Mhun_3045	-	TPR repeat-containing protein
2952	 52.36	+1	3318320..3319906	+	528	88604274	-	Mhun_3046	-	hypothetical protein
2953	 53.37	+1	3319903..3320880	+	325	88604275	-	Mhun_3047	-	hypothetical protein
2954	 49.05	0	3320943..3321470	+	175	88604276	-	Mhun_3048	-	hypothetical protein
2955	 47.45	0	3321496..3322671	+	391	88604277	-	Mhun_3049	-	glutaredoxin
2956	 41.75	0	3322653..3323924	-	423	88604278	-	Mhun_3050	-	hypothetical protein
2957	 50.00	0	3323983..3325248	-	421	88604279	-	Mhun_3051	-	methyltransferase DNA modification enzyme
2958	 52.28	+1	3325248..3326693	-	481	88604280	-	Mhun_3052	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2959	 56.32	+2	3326693..3328315	-	540	88604281	sdhA	Mhun_3053	-	succinate dehydrogenase flavoprotein subunit
2960	 53.08	+1	3328436..3329833	+	465	88604282	-	Mhun_3054	-	aspartate kinase
2961	 52.27	+1	3329836..3330828	+	330	88604283	-	Mhun_3055	-	phosphoribosylformylglycinamidine cyclo-ligase
2962	 47.24	0	3330820..3331344	-	174	88604284	-	Mhun_3056	-	ZPR1-related zinc finger protein
2963	 48.48	0	3331347..3331709	-	120	88604285	-	Mhun_3057	-	hypothetical protein
2964	 50.40	0	3331780..3332277	-	165	88604286	-	Mhun_3058	-	hypothetical protein
2965	 46.50	0	3332394..3332636	+	80	88604287	-	Mhun_3059	-	like-Sm ribonucleoprotein, core
2966	 49.18	0	3332650..3332832	+	60	88604288	rpl37e	Mhun_3060	-	50S ribosomal protein L37e
2967	 49.42	0	3332757..3334646	+	629	88604289	-	Mhun_3061	-	amidophosphoribosyltransferase
2968	 39.74	-1	3334603..3335070	+	155	88604290	-	Mhun_3062	-	DNA polymerase, beta-like region
2969	 51.73	+1	3335147..3336733	+	528	88604291	-	Mhun_3063	-	D-3-phosphoglycerate dehydrogenase
2970	 35.04	-2	3336919..3337446	+	175	88604292	-	Mhun_3064	-	hypothetical protein
2971	 46.27	0	3337891..3339243	+	450	88604293	-	Mhun_3065	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
2972	 44.57	0	3339247..3341694	-	815	88604294	-	Mhun_3066	-	hypothetical protein
2973	 41.86	0	3342477..3343661	+	394	88604295	-	Mhun_3067	-	glycosyl transferase family protein
2974	 38.56	-1	3344084..3344791	-	235	88604296	-	Mhun_3068	-	acylphosphatase-like protein
2975	 42.18	0	3344901..3345194	-	97	88604297	-	Mhun_3069	-	hypothetical protein
2976	 33.33	-2	3345264..3345614	+	116	88604298	-	Mhun_3070	-	DNA polymerase, beta-like region
2977	 39.34	-1	3345607..3345939	+	110	88604299	-	Mhun_3071	-	hypothetical protein
2978	 46.97	0	3346244..3347299	-	351	88604300	-	Mhun_3072	-	dTDP-glucose 4,6-dehydratase
2979	 44.76	0	3347302..3348150	-	282	88604301	-	Mhun_3073	-	dTDP-4-dehydrorhamnose reductase
2980	 42.76	0	3348160..3348732	-	190	88604302	-	Mhun_3074	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2981	 45.12	0	3348735..3349616	-	293	88604303	-	Mhun_3075	-	glucose-1-phosphate thymidylyltransferase
2982	 37.52	-1	3349735..3350832	+	365	88604304	-	Mhun_3076	-	glycosyl transferase, group 1
2983	 35.56	-2	3350814..3351755	+	313	88604305	-	Mhun_3077	-	glycosyl transferase family protein
2984	 43.33	0	3351962..3353242	+	426	88604306	-	Mhun_3078	-	UDP-glucose 6-dehydrogenase
2985	 41.98	0	3353244..3354122	+	292	88604307	-	Mhun_3079	-	UTP-glucose-1-phosphate uridylyltransferase
2986	 43.81	0	3354129..3355130	+	333	88604308	-	Mhun_3080	-	NAD-dependent epimerase/dehydratase
2987	 43.19	0	3355248..3356474	+	408	88604309	-	Mhun_3081	-	hypothetical protein
2988	 47.49	0	3356488..3357681	+	397	88604310	-	Mhun_3082	-	hypothetical protein
2989	 31.81	-2	3357998..3358915	-	305	88604311	-	Mhun_3083	-	transposase, IS4
2990	 41.57	0	3359152..3360183	+	343	88604312	-	Mhun_3084	-	NAD-dependent epimerase/dehydratase
2991	 31.23	-2	3360254..3361396	+	380	88604313	-	Mhun_3085	-	hypothetical protein
2992	 28.97	-2	3361530..3363410	+	626	88604314	-	Mhun_3086	-	hypothetical protein
2993	 29.38	-2	3363497..3364558	+	353	88604315	-	Mhun_3087	-	hypothetical protein
2994	 42.58	0	3364550..3365836	-	428	88604316	-	Mhun_3088	-	ABC transporter related
2995	 35.76	-1	3365851..3366714	-	287	88604317	-	Mhun_3089	-	hypothetical protein
2996	 46.59	0	3366840..3367820	+	326	88604318	-	Mhun_3090	-	polysaccharide biosynthesis protein CapD
2997	 41.37	0	3367843..3368178	-	111	88604319	-	Mhun_3091	-	DNA polymerase, beta-like region
2998	 37.83	-1	3368160..3368537	-	125	88604320	-	Mhun_3092	-	HEPN
2999	 46.17	0	3368737..3369912	+	391	88604321	-	Mhun_3093	-	DegT/DnrJ/EryC1/StrS aminotransferase
3000	 46.55	0	3369956..3370636	+	226	88604322	-	Mhun_3094	-	acylneuraminate cytidylyltransferase
3001	 30.62	-2	3370723..3371349	+	208	88604323	-	Mhun_3095	-	hypothetical protein
3002	 44.98	0	3371484..3372977	+	497	88604324	-	Mhun_3096	-	GCN5-related N-acetyltransferase
3003	 37.48	-1	3372991..3373617	+	208	88604325	-	Mhun_3097	-	hypothetical protein
3004	 47.41	0	3373630..3374673	+	347	88604326	-	Mhun_3098	-	N-acylneuraminate-9-phosphate synthase
3005	 35.90	-1	3374705..3376615	-	636	88604327	-	Mhun_3099	-	hypothetical protein
3006	 43.67	0	3376702..3377688	+	328	88604328	-	Mhun_3100	-	dTDP-glucose 4,6-dehydratase
3007	 41.52	0	3377773..3377943	+	56	88604329	-	Mhun_3101	-	hypothetical protein
3008	 36.92	-1	3377940..3378329	+	129	88604330	-	Mhun_3102	-	YcfA-like
3009	 39.82	-1	3378422..3378976	+	184	88604331	-	Mhun_3103	-	hypothetical protein
3010	 32.84	-2	3379045..3379650	-	201	88604332	-	Mhun_3104	-	hypothetical protein
3011	 36.45	-1	3379614..3380030	-	138	88604333	-	Mhun_3105	-	hypothetical protein
3012	 42.84	0	3380185..3381120	+	311	88604334	-	Mhun_3106	-	generic methyltransferase
3013	 46.29	0	3381117..3381857	+	246	88604335	-	Mhun_3107	-	nucleotidyl transferase
3014	 43.87	0	3381854..3383020	+	388	88604336	-	Mhun_3108	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
3015	 35.16	-2	3383156..3383539	+	127	88604337	-	Mhun_3109	-	phosphopantethiene-protein transferase domain-contain protein
3016	 35.83	-1	3383541..3383780	+	79	88604338	-	Mhun_3110	-	acyl carrier protein
3017	 40.49	-1	3384020..3385276	+	418	88604339	-	Mhun_3111	-	AMP-dependent synthetase and ligase
3018	 39.15	-1	3385266..3386399	+	377	88604340	-	Mhun_3112	-	acyl-protein synthetase, LuxE
3019	 39.92	-1	3386396..3387685	+	429	88604341	-	Mhun_3113	-	acyl protein synthase/acyl-CoA reductase RfbN
3020	 38.92	-1	3387699..3388307	+	202	88604342	-	Mhun_3114	-	short-chain dehydrogenase/reductase SDR
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.