IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2870	 42.89	0	3240595..3241902	+	435	88604192	-	Mhun_2963	-	ATPase
2871	 51.59	+1	3242078..3242548	+	156	88604193	-	Mhun_2964	-	methionine sulfoxide reductase B
2872	 47.01	0	3242556..3243608	-	350	88604194	-	Mhun_2965	-	histidine kinase
2873	 51.02	+1	3243619..3244155	-	178	88604195	-	Mhun_2966	-	4-vinyl reductase, 4VR
2874	 49.69	0	3244203..3245333	-	376	88604196	-	Mhun_2967	-	putative PAS/PAC sensor protein
2875	 45.90	0	3245402..3246841	-	479	88604197	-	Mhun_2968	-	putative PAS/PAC sensor protein
2876	 47.66	0	3247084..3247425	-	113	88604198	-	Mhun_2969	-	translation initiation factor IF-1A
2877	 48.32	0	3247591..3248691	+	366	88604199	-	Mhun_2970	-	hypothetical protein
2878	 49.65	0	3249134..3249556	+	140	88604200	-	Mhun_2972	-	hypothetical protein
2879	 51.39	+1	3249594..3250418	-	274	88604201	-	Mhun_2973	-	CMP/dCMP deaminase, zinc-binding
2880	 48.63	0	3250520..3251140	+	206	88604202	-	Mhun_2974	-	superoxide dismutase
2881	 48.31	0	3251216..3253492	+	758	88604203	-	Mhun_2975	-	methyl-accepting chemotaxis sensory transducer
2882	 49.02	0	3253496..3254617	-	373	88604204	-	Mhun_2976	-	thiamine pyrophosphate enzyme-like TPP-binding
2883	 53.43	+1	3254610..3255878	-	422	88604205	-	Mhun_2977	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
2884	 53.37	+1	3255875..3257092	-	405	88604206	-	Mhun_2978	-	hypothetical protein
2885	 51.04	+1	3257089..3257715	-	208	88604207	-	Mhun_2979	-	putative Fe-S cluster
2886	 51.06	+1	3257715..3258419	-	234	88604208	-	Mhun_2980	-	cobalamin synthesis protein, P47K
2887	 50.73	0	3258419..3259240	-	273	88604209	-	Mhun_2981	-	ABC transporter related
2888	 50.15	0	3259551..3261500	+	649	88604210	-	Mhun_2982	-	phosphate ABC transporter permease
2889	 45.41	0	3261504..3262265	+	253	88604211	-	Mhun_2983	-	phosphate ABC transporter permease
2890	 44.70	0	3262270..3262920	+	216	88604212	-	Mhun_2984	-	phosphate uptake regulator, PhoU
2891	 46.93	0	3263149..3264060	-	303	88604213	-	Mhun_2985	-	phosphate binding protein
2892	 46.11	0	3264291..3265715	+	474	88604214	-	Mhun_2986	-	putative PAS/PAC sensor protein
2893	 48.10	0	3265781..3266518	+	245	88604215	-	Mhun_2987	-	hypothetical protein
2894	 47.93	0	3266631..3268541	+	636	88604216	-	Mhun_2988	-	metallophosphoesterase
2895	 46.74	0	3268541..3269122	+	193	88604217	-	Mhun_2989	-	exopolyphosphatase, putative
2896	 48.53	0	3269113..3270672	+	519	88604218	-	Mhun_2990	-	Ppx/GppA phosphatase
2897	 47.49	0	3270682..3271239	-	185	88604219	-	Mhun_2991	-	NADPH-dependent FMN reductase
2898	 51.19	+1	3271448..3273088	+	546	88604220	-	Mhun_2992	-	pyruvate flavodoxin/ferredoxin oxidoreductase-like
2899	 47.28	0	3273085..3273930	+	281	88604221	-	Mhun_2993	-	thiamine pyrophosphate enzyme-like TPP-binding
2900	 44.03	0	3273934..3274887	-	317	88604222	-	Mhun_2994	-	TPR repeat-containing protein
2901	 45.58	0	3275047..3275544	+	165	88604223	-	Mhun_2995	-	hypothetical protein
2902	 50.02	0	3275488..3277590	-	700	88604224	-	Mhun_2996	-	hypothetical protein
2903	 46.23	0	3277780..3279051	+	423	88604225	-	Mhun_2997	-	putative PAS/PAC sensor protein
2904	 49.19	0	3279073..3279381	-	102	88604226	-	Mhun_2998	-	hypothetical protein
2905	 32.84	-2	3279418..3280023	-	201	88604227	-	Mhun_2999	-	hypothetical protein
2906	 36.45	-1	3279987..3280403	-	138	88604228	-	Mhun_3000	-	hypothetical protein
2907	 51.47	+1	3280631..3282433	+	600	88604229	-	Mhun_3001	-	PEGA
2908	 43.81	0	3282470..3282784	+	104	88604230	-	Mhun_3002	-	hypothetical protein
2909	 49.89	0	3282794..3283711	-	305	88604231	-	Mhun_3003	-	protein of unknown function Met10
2910	 53.65	+1	3283751..3284956	+	401	88604232	-	Mhun_3004	-	3-hydroxy-3-methylglutaryl coenzyme A reductase
2911	 50.30	0	3285013..3285996	+	327	88604233	-	Mhun_3005	-	hypothetical protein
2912	 48.74	0	3286016..3286333	-	105	88604234	-	Mhun_3006	-	hypothetical protein
2913	 43.74	0	3286384..3286806	-	140	88604235	-	Mhun_3007	-	hypothetical protein
2914	 44.62	0	3286803..3286988	-	61	88604236	-	Mhun_3008	-	exonuclease VII, small subunit
2915	 53.00	+1	3286972..3288390	-	472	88604237	-	Mhun_3009	-	exodeoxyribonuclease VII, large subunit
2916	 48.11	0	3288412..3289257	+	281	88604238	-	Mhun_3010	-	xylose isomerase-like TIM barrel
2917	 45.04	0	3289438..3290727	+	429	88604239	-	Mhun_3011	-	hypothetical protein
2918	 51.46	+1	3290724..3291341	+	205	88604240	-	Mhun_3012	-	phosphoribosylglycinamide formyltransferase
2919	 49.26	0	3291338..3291676	+	112	88604241	-	Mhun_3013	-	RNAse P, Rpr2/Rpp21 subunit
2920	 44.58	0	3291657..3291905	+	82	88604242	-	Mhun_3014	-	RNA-binding protein
2921	 50.83	+1	3291984..3292406	+	140	88604243	-	Mhun_3015	-	30S ribosomal protein S19e
2922	 50.15	0	3292425..3292757	+	110	88604244	-	Mhun_3016	-	hypothetical protein
2923	 51.01	+1	3292754..3293347	+	197	88604245	-	Mhun_3017	-	PP-loop
2924	 52.29	+1	3293355..3293507	+	50	88604246	rpl39e	Mhun_3018	-	50S ribosomal protein L39e
2925	 53.79	+1	3293513..3293776	+	87	88604247	-	Mhun_3019	-	50S ribosomal protein L31e
2926	 49.85	0	3293777..3294442	+	221	88604248	-	Mhun_3020	-	translation initiation factor IF-6
2927	 51.11	+1	3294645..3295094	+	149	88604249	-	Mhun_3021	-	prefoldin alpha subunit
2928	 48.12	0	3295130..3296191	+	353	88604250	-	Mhun_3022	-	signal recognition particle-docking protein FtsY
2929	 52.82	+1	3296191..3297504	+	437	88604251	-	Mhun_3023	-	signal recognition particle protein Srp54
2930	 50.26	0	3297504..3298088	+	194	88604252	-	Mhun_3024	-	hypothetical protein
2931	 49.60	0	3298079..3299326	+	415	88604253	-	Mhun_3025	-	hypothetical protein
2932	 50.34	0	3299313..3299606	+	97	88604254	-	Mhun_3026	-	50S ribosomal protein L21e
2933	 45.48	0	3299628..3299981	+	117	88604255	-	Mhun_3027	-	RNA polymerase Rpb4
2934	 46.17	0	3299992..3300552	+	186	88604256	-	Mhun_3028	-	hypothetical protein
2935	 50.71	0	3300549..3301319	+	256	88604257	-	Mhun_3029	-	dimethyladenosine transferase
2936	 48.89	0	3301369..3301863	+	164	88604258	-	Mhun_3030	-	putative methylase
2937	 49.74	0	3301869..3302453	-	194	88604259	-	Mhun_3031	-	sugar isomerase (SIS)
2938	 50.34	0	3302549..3304036	-	495	88604260	-	Mhun_3032	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2939	 46.12	0	3304134..3305189	-	351	88604261	-	Mhun_3033	-	hypothetical protein
2940	 49.09	0	3305374..3306528	+	384	88604262	-	Mhun_3034	-	arsenite permease
2941	 48.44	0	3306608..3306991	+	127	88604263	-	Mhun_3035	-	response regulator receiver domain-containing protein
2942	 41.67	0	3307354..3307557	-	67	88604264	-	Mhun_3036	-	XRE family transcriptional regulator
2943	 46.81	0	3307547..3307969	-	140	88604265	-	Mhun_3037	-	hypothetical protein
2944	 48.24	0	3308080..3310716	+	878	88604266	-	Mhun_3038	-	signal transduction histidine kinase
2945	 50.94	+1	3310713..3311780	+	355	88604267	-	Mhun_3039	-	response regulator receiver sensor signal transduction histidine kinase
2946	 47.73	0	3311793..3312188	+	131	88604268	-	Mhun_3040	-	response regulator receiver domain-containing protein
2947	 48.68	0	3312216..3312593	+	125	88604269	-	Mhun_3041	-	response regulator receiver domain-containing protein
2948	 49.18	0	3312649..3313935	-	428	88604270	-	Mhun_3042	-	PKD
2949	 48.37	0	3313979..3316099	+	706	88604271	-	Mhun_3043	-	endothelin-converting protein 1
2950	 42.95	0	3316104..3316550	+	148	88604272	-	Mhun_3044	-	hypothetical protein
2951	 48.87	0	3316543..3318093	-	516	88604273	-	Mhun_3045	-	TPR repeat-containing protein
2952	 52.36	+1	3318320..3319906	+	528	88604274	-	Mhun_3046	-	hypothetical protein
2953	 53.37	+1	3319903..3320880	+	325	88604275	-	Mhun_3047	-	hypothetical protein
2954	 49.05	0	3320943..3321470	+	175	88604276	-	Mhun_3048	-	hypothetical protein
2955	 47.45	0	3321496..3322671	+	391	88604277	-	Mhun_3049	-	glutaredoxin
2956	 41.75	0	3322653..3323924	-	423	88604278	-	Mhun_3050	-	hypothetical protein
2957	 50.00	0	3323983..3325248	-	421	88604279	-	Mhun_3051	-	methyltransferase DNA modification enzyme
2958	 52.28	+1	3325248..3326693	-	481	88604280	-	Mhun_3052	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2959	 56.32	+2	3326693..3328315	-	540	88604281	sdhA	Mhun_3053	-	succinate dehydrogenase flavoprotein subunit
2960	 53.08	+1	3328436..3329833	+	465	88604282	-	Mhun_3054	-	aspartate kinase
2961	 52.27	+1	3329836..3330828	+	330	88604283	-	Mhun_3055	-	phosphoribosylformylglycinamidine cyclo-ligase
2962	 47.24	0	3330820..3331344	-	174	88604284	-	Mhun_3056	-	ZPR1-related zinc finger protein
2963	 48.48	0	3331347..3331709	-	120	88604285	-	Mhun_3057	-	hypothetical protein
2964	 50.40	0	3331780..3332277	-	165	88604286	-	Mhun_3058	-	hypothetical protein
2965	 46.50	0	3332394..3332636	+	80	88604287	-	Mhun_3059	-	like-Sm ribonucleoprotein, core
2966	 49.18	0	3332650..3332832	+	60	88604288	rpl37e	Mhun_3060	-	50S ribosomal protein L37e
2967	 49.42	0	3332757..3334646	+	629	88604289	-	Mhun_3061	-	amidophosphoribosyltransferase
2968	 39.74	-1	3334603..3335070	+	155	88604290	-	Mhun_3062	-	DNA polymerase, beta-like region
2969	 51.73	+1	3335147..3336733	+	528	88604291	-	Mhun_3063	-	D-3-phosphoglycerate dehydrogenase
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.