IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2804	 50.12	0	3175231..3176439	-	402	88604126	eno	Mhun_2893	-	phosphopyruvate hydratase
2805	 50.00	0	3176448..3176615	-	55	88604127	-	Mhun_2894	-	RNA polymerase Rpb6
2806	 48.68	0	3176724..3176912	-	62	88604128	-	Mhun_2895	-	DNA-directed RNA polymerase subunit N
2807	 52.13	+1	3176953..3177351	-	132	88604129	rps9p	Mhun_2896	-	30S ribosomal protein S9P
2808	 50.59	0	3177366..3177788	-	140	88604130	-	Mhun_2897	-	ribosomal protein L13
2809	 53.01	+1	3177798..3178163	-	121	88604131	-	Mhun_2898	-	50S ribosomal protein L18e
2810	 50.06	0	3178170..3178988	-	272	88604132	-	Mhun_2899	-	DNA-directed RNA polymerase subunit D
2811	 52.53	+1	3178988..3179383	-	131	88604133	rps11p	Mhun_2900	-	30S ribosomal protein S11P
2812	 50.18	0	3179386..3179931	-	181	88604134	rps4p	Mhun_2901	-	30S ribosomal protein S4
2813	 50.22	0	3179944..3180399	-	151	88604135	rps13p	Mhun_2902	-	30S ribosomal protein S13P
2814	 49.74	0	3180642..3181610	-	322	88604136	-	Mhun_2903	-	putative deoxyhypusine synthase
2815	 48.33	0	3181784..3182563	-	259	88604137	-	Mhun_2904	-	signal-transduction protein
2816	 50.72	0	3182560..3183318	-	252	88604138	-	Mhun_2905	-	XRE family transcriptional regulator
2817	 50.23	0	3183322..3184197	-	291	88604139	-	Mhun_2906	-	signal transduction protein
2818	 49.74	0	3184410..3184976	-	188	88604140	-	Mhun_2907	-	signal-transduction protein
2819	 51.43	+1	3185192..3185821	+	209	88604141	-	Mhun_2908	-	small GTP-binding protein domain-containing protein
2820	 47.66	0	3185827..3186189	+	120	88604142	-	Mhun_2909	-	hypothetical protein
2821	 50.00	0	3186193..3186576	+	127	88604143	-	Mhun_2910	-	hypothetical protein
2822	 42.48	0	3186590..3186895	-	101	88604144	-	Mhun_2911	-	translation initiation factor Sui1
2823	 52.40	+1	3187028..3188464	+	478	88604145	-	Mhun_2912	-	cobyric acid synthase
2824	 52.49	+1	3188457..3188717	-	86	88604146	-	Mhun_2913	-	hypothetical protein
2825	 47.98	0	3188714..3190003	-	429	88604147	-	Mhun_2914	-	hypothetical protein
2826	 53.52	+1	3190015..3190539	-	174	88604148	-	Mhun_2915	-	nicotinamide-nucleotide adenylyltransferase
2827	 57.14	+2	3190536..3191312	-	258	88604149	-	Mhun_2916	-	AIR carboxylase
2828	 52.83	+1	3191362..3191679	+	105	88604150	-	Mhun_2917	-	hypothetical protein
2829	 54.12	+1	3191684..3192910	+	408	88604151	-	Mhun_2918	-	histidyl-tRNA synthetase
2830	 52.61	+1	3192912..3194732	+	606	88604152	-	Mhun_2919	-	DNA topoisomerase VI subunit B
2831	 50.54	0	3194797..3195819	+	340	88604153	-	Mhun_2920	-	DNA topoisomerase VI subunit A
2832	 50.42	0	3195862..3196692	+	276	88604154	-	Mhun_2921	-	hypothetical protein
2833	 51.12	+1	3196856..3198823	+	655	88604155	-	Mhun_2922	-	ATPase
2834	 50.81	+1	3198832..3201606	+	924	88604156	-	Mhun_2923	-	leucyl-tRNA synthetase
2835	 45.40	0	3201610..3201924	-	104	88604157	-	Mhun_2924	-	hypothetical protein
2836	 45.23	0	3202156..3203088	+	310	88604158	-	Mhun_2925	-	Mg2+ transporter protein, CorA-like
2837	 39.12	-1	3203191..3203484	+	97	88604159	-	Mhun_2926	-	hypothetical protein
2838	 49.37	0	3203648..3204202	+	184	88604160	-	Mhun_2927	-	hypothetical protein
2839	 46.95	0	3204212..3204424	+	70	88604161	-	Mhun_2928	-	XRE family transcriptional regulator
2840	 49.70	0	3204465..3205130	+	221	88604162	-	Mhun_2929	-	hypothetical protein
2841	 49.18	0	3205127..3206287	+	386	88604163	-	Mhun_2930	-	hypothetical protein
2842	 53.28	+1	3206289..3206975	+	228	88604164	-	Mhun_2931	-	ABC transporter related
2843	 51.66	+1	3206972..3208144	+	390	88604165	-	Mhun_2932	-	hypothetical protein
2844	 48.41	0	3208159..3209133	-	324	88604166	-	Mhun_2933	-	GTP-binding protein, HSR1-related
2845	 44.36	0	3209301..3209708	+	135	88604167	-	Mhun_2934	-	tetratricopeptide TPR_2
2846	 42.59	0	3209822..3210037	-	71	88604168	-	Mhun_2935	-	phage shock protein C, PspC
2847	 48.92	0	3210427..3211305	+	292	88604169	-	Mhun_2936	-	signal transduction protein
2848	 47.88	0	3211316..3212305	+	329	88604170	-	Mhun_2937	-	DNA methylase N-4/N-6
2849	 48.02	0	3212365..3212616	+	83	88604171	-	Mhun_2938	-	PRC-barrel
2850	 49.64	0	3212598..3213296	-	232	88604172	-	Mhun_2939	-	SPP-like hydrolase
2851	 52.53	+1	3213332..3214555	-	407	88604173	radA	Mhun_2940	-	DNA repair and recombination protein RadA
2852	 53.80	+1	3214633..3215922	-	429	88604174	-	Mhun_2941	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2853	 53.52	+1	3215938..3217230	-	430	88604175	-	Mhun_2942	-	diaminopimelate decarboxylase
2854	 50.57	0	3217227..3218375	-	382	88604176	-	Mhun_2943	-	aminotransferase, class I and II
2855	 49.36	0	3218438..3220858	-	806	88604177	-	Mhun_2944	-	methyl-accepting chemotaxis sensory transducer
2856	 48.48	0	3221032..3221823	-	263	88604178	-	Mhun_2945	-	aminoglycoside phosphotransferase
2857	 49.12	0	3221920..3223224	-	434	88604179	-	Mhun_2946	-	hypothetical protein
2858	 39.90	-1	3223302..3225098	-	598	88604180	-	Mhun_2947	-	putative PAS/PAC sensor protein
2859	 46.11	0	3225144..3226442	-	432	88604181	-	Mhun_2948	-	methyl-accepting chemotaxis sensory transducer
2860	 50.38	0	3226884..3228203	-	439	88604182	-	Mhun_2950	-	PKD
2861	 36.69	-1	3228405..3228761	-	118	88604183	-	Mhun_2951	-	hypothetical protein
2862	 44.11	0	3228767..3229258	-	163	88604184	-	Mhun_2952	-	hypothetical protein
2863	 50.09	0	3230074..3230634	-	186	88604185	-	Mhun_2953	-	hypothetical protein
2864	 48.41	0	3230657..3231160	-	167	88604186	-	Mhun_2954	-	hypothetical protein
2865	 52.49	+1	3231378..3231779	-	133	88604187	-	Mhun_2955	-	hypothetical protein
2866	 50.08	0	3231949..3235137	-	1062	88604188	-	Mhun_2956	-	hypothetical protein
2867	 54.13	+1	3235127..3235477	-	116	88604189	-	Mhun_2957	-	hypothetical protein
2868	 46.54	0	3235470..3235946	-	158	88604190	-	Mhun_2958	-	hypothetical protein
2869	 47.58	0	3237010..3238806	+	598	88604191	-	Mhun_2961	-	hypothetical protein
2870	 42.89	0	3240595..3241902	+	435	88604192	-	Mhun_2963	-	ATPase
2871	 51.59	+1	3242078..3242548	+	156	88604193	-	Mhun_2964	-	methionine sulfoxide reductase B
2872	 47.01	0	3242556..3243608	-	350	88604194	-	Mhun_2965	-	histidine kinase
2873	 51.02	+1	3243619..3244155	-	178	88604195	-	Mhun_2966	-	4-vinyl reductase, 4VR
2874	 49.69	0	3244203..3245333	-	376	88604196	-	Mhun_2967	-	putative PAS/PAC sensor protein
2875	 45.90	0	3245402..3246841	-	479	88604197	-	Mhun_2968	-	putative PAS/PAC sensor protein
2876	 47.66	0	3247084..3247425	-	113	88604198	-	Mhun_2969	-	translation initiation factor IF-1A
2877	 48.32	0	3247591..3248691	+	366	88604199	-	Mhun_2970	-	hypothetical protein
2878	 49.65	0	3249134..3249556	+	140	88604200	-	Mhun_2972	-	hypothetical protein
2879	 51.39	+1	3249594..3250418	-	274	88604201	-	Mhun_2973	-	CMP/dCMP deaminase, zinc-binding
2880	 48.63	0	3250520..3251140	+	206	88604202	-	Mhun_2974	-	superoxide dismutase
2881	 48.31	0	3251216..3253492	+	758	88604203	-	Mhun_2975	-	methyl-accepting chemotaxis sensory transducer
2882	 49.02	0	3253496..3254617	-	373	88604204	-	Mhun_2976	-	thiamine pyrophosphate enzyme-like TPP-binding
2883	 53.43	+1	3254610..3255878	-	422	88604205	-	Mhun_2977	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
2884	 53.37	+1	3255875..3257092	-	405	88604206	-	Mhun_2978	-	hypothetical protein
2885	 51.04	+1	3257089..3257715	-	208	88604207	-	Mhun_2979	-	putative Fe-S cluster
2886	 51.06	+1	3257715..3258419	-	234	88604208	-	Mhun_2980	-	cobalamin synthesis protein, P47K
2887	 50.73	0	3258419..3259240	-	273	88604209	-	Mhun_2981	-	ABC transporter related
2888	 50.15	0	3259551..3261500	+	649	88604210	-	Mhun_2982	-	phosphate ABC transporter permease
2889	 45.41	0	3261504..3262265	+	253	88604211	-	Mhun_2983	-	phosphate ABC transporter permease
2890	 44.70	0	3262270..3262920	+	216	88604212	-	Mhun_2984	-	phosphate uptake regulator, PhoU
2891	 46.93	0	3263149..3264060	-	303	88604213	-	Mhun_2985	-	phosphate binding protein
2892	 46.11	0	3264291..3265715	+	474	88604214	-	Mhun_2986	-	putative PAS/PAC sensor protein
2893	 48.10	0	3265781..3266518	+	245	88604215	-	Mhun_2987	-	hypothetical protein
2894	 47.93	0	3266631..3268541	+	636	88604216	-	Mhun_2988	-	metallophosphoesterase
2895	 46.74	0	3268541..3269122	+	193	88604217	-	Mhun_2989	-	exopolyphosphatase, putative
2896	 48.53	0	3269113..3270672	+	519	88604218	-	Mhun_2990	-	Ppx/GppA phosphatase
2897	 47.49	0	3270682..3271239	-	185	88604219	-	Mhun_2991	-	NADPH-dependent FMN reductase
2898	 51.19	+1	3271448..3273088	+	546	88604220	-	Mhun_2992	-	pyruvate flavodoxin/ferredoxin oxidoreductase-like
2899	 47.28	0	3273085..3273930	+	281	88604221	-	Mhun_2993	-	thiamine pyrophosphate enzyme-like TPP-binding
2900	 44.03	0	3273934..3274887	-	317	88604222	-	Mhun_2994	-	TPR repeat-containing protein
2901	 45.58	0	3275047..3275544	+	165	88604223	-	Mhun_2995	-	hypothetical protein
2902	 50.02	0	3275488..3277590	-	700	88604224	-	Mhun_2996	-	hypothetical protein
2903	 46.23	0	3277780..3279051	+	423	88604225	-	Mhun_2997	-	putative PAS/PAC sensor protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.