IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2779	 52.46	+1	3149687..3151249	+	520	88604101	-	Mhun_2868	-	O-sialoglycoprotein endopeptidase/protein kinase
2780	 52.93	+1	3151246..3151791	+	181	88604102	-	Mhun_2869	-	Ham1-like protein
2781	 50.34	0	3151854..3152000	+	48	88604103	rpl40e	Mhun_2870	-	50S ribosomal protein L40e
2782	 46.39	0	3152005..3152655	-	216	88604104	-	Mhun_2871	-	hypothetical protein
2783	 46.41	0	3152701..3153174	-	157	88604105	-	Mhun_2872	-	hypothetical protein
2784	 49.49	0	3153227..3154414	-	395	88604106	-	Mhun_2873	-	major facilitator transporter
2785	 46.84	0	3154524..3155219	+	231	88604107	-	Mhun_2874	-	HAD family hydrolase
2786	 46.37	0	3155222..3157345	-	707	88604108	-	Mhun_2875	-	putative PAS/PAC sensor protein
2787	 42.86	0	3157582..3160374	+	930	88604109	-	Mhun_2876	-	multi-sensor signal transduction histidine kinase
2788	 41.51	0	3160358..3160822	+	154	88604110	-	Mhun_2877	-	response regulator receiver domain-containing protein
2789	 48.43	0	3160839..3161381	-	180	88604111	-	Mhun_2878	-	hypothetical protein
2790	 47.24	0	3161399..3161779	-	126	88604112	-	Mhun_2879	-	response regulator receiver domain-containing protein
2791	 48.26	0	3161855..3163006	+	383	88604113	-	Mhun_2880	-	radical SAM family protein
2792	 50.00	0	3163070..3163927	+	285	88604114	-	Mhun_2881	-	beta-lactamase-like
2793	 49.45	0	3163940..3165583	+	547	88604115	-	Mhun_2882	-	DNA ligase I, ATP-dependent (dnl1)
2794	 49.37	0	3165773..3166171	+	132	88604116	-	Mhun_2883	-	S-adenosylmethionine decarboxylase related
2795	 48.58	0	3166177..3167055	+	292	88604117	-	Mhun_2884	-	spermidine synthase
2796	 51.66	+1	3167068..3168753	-	561	88604118	gltX	Mhun_2885	-	glutamyl-tRNA synthetase
2797	 49.74	0	3168753..3169715	-	320	88604119	-	Mhun_2886	-	farnesyltranstransferase
2798	 47.16	0	3169730..3171067	-	445	88604120	-	Mhun_2887	-	beta-lactamase-like
2799	 51.56	+1	3171057..3172148	-	363	88604121	-	Mhun_2888	-	isopentenyl pyrophosphate isomerase
2800	 50.06	0	3172145..3172915	-	256	88604122	-	Mhun_2889	-	aspartate/glutamate/uridylate kinase
2801	 49.31	0	3172908..3173777	-	289	88604123	-	Mhun_2890	-	mevalonate kinase
2802	 49.06	0	3173777..3174571	-	264	88604124	-	Mhun_2891	-	hypothetical protein
2803	 50.57	0	3174636..3175244	-	202	88604125	rps2P	Mhun_2892	-	30S ribosomal protein S2
2804	 50.12	0	3175231..3176439	-	402	88604126	eno	Mhun_2893	-	phosphopyruvate hydratase
2805	 50.00	0	3176448..3176615	-	55	88604127	-	Mhun_2894	-	RNA polymerase Rpb6
2806	 48.68	0	3176724..3176912	-	62	88604128	-	Mhun_2895	-	DNA-directed RNA polymerase subunit N
2807	 52.13	+1	3176953..3177351	-	132	88604129	rps9p	Mhun_2896	-	30S ribosomal protein S9P
2808	 50.59	0	3177366..3177788	-	140	88604130	-	Mhun_2897	-	ribosomal protein L13
2809	 53.01	+1	3177798..3178163	-	121	88604131	-	Mhun_2898	-	50S ribosomal protein L18e
2810	 50.06	0	3178170..3178988	-	272	88604132	-	Mhun_2899	-	DNA-directed RNA polymerase subunit D
2811	 52.53	+1	3178988..3179383	-	131	88604133	rps11p	Mhun_2900	-	30S ribosomal protein S11P
2812	 50.18	0	3179386..3179931	-	181	88604134	rps4p	Mhun_2901	-	30S ribosomal protein S4
2813	 50.22	0	3179944..3180399	-	151	88604135	rps13p	Mhun_2902	-	30S ribosomal protein S13P
2814	 49.74	0	3180642..3181610	-	322	88604136	-	Mhun_2903	-	putative deoxyhypusine synthase
2815	 48.33	0	3181784..3182563	-	259	88604137	-	Mhun_2904	-	signal-transduction protein
2816	 50.72	0	3182560..3183318	-	252	88604138	-	Mhun_2905	-	XRE family transcriptional regulator
2817	 50.23	0	3183322..3184197	-	291	88604139	-	Mhun_2906	-	signal transduction protein
2818	 49.74	0	3184410..3184976	-	188	88604140	-	Mhun_2907	-	signal-transduction protein
2819	 51.43	+1	3185192..3185821	+	209	88604141	-	Mhun_2908	-	small GTP-binding protein domain-containing protein
2820	 47.66	0	3185827..3186189	+	120	88604142	-	Mhun_2909	-	hypothetical protein
2821	 50.00	0	3186193..3186576	+	127	88604143	-	Mhun_2910	-	hypothetical protein
2822	 42.48	0	3186590..3186895	-	101	88604144	-	Mhun_2911	-	translation initiation factor Sui1
2823	 52.40	+1	3187028..3188464	+	478	88604145	-	Mhun_2912	-	cobyric acid synthase
2824	 52.49	+1	3188457..3188717	-	86	88604146	-	Mhun_2913	-	hypothetical protein
2825	 47.98	0	3188714..3190003	-	429	88604147	-	Mhun_2914	-	hypothetical protein
2826	 53.52	+1	3190015..3190539	-	174	88604148	-	Mhun_2915	-	nicotinamide-nucleotide adenylyltransferase
2827	 57.14	+2	3190536..3191312	-	258	88604149	-	Mhun_2916	-	AIR carboxylase
2828	 52.83	+1	3191362..3191679	+	105	88604150	-	Mhun_2917	-	hypothetical protein
2829	 54.12	+1	3191684..3192910	+	408	88604151	-	Mhun_2918	-	histidyl-tRNA synthetase
2830	 52.61	+1	3192912..3194732	+	606	88604152	-	Mhun_2919	-	DNA topoisomerase VI subunit B
2831	 50.54	0	3194797..3195819	+	340	88604153	-	Mhun_2920	-	DNA topoisomerase VI subunit A
2832	 50.42	0	3195862..3196692	+	276	88604154	-	Mhun_2921	-	hypothetical protein
2833	 51.12	+1	3196856..3198823	+	655	88604155	-	Mhun_2922	-	ATPase
2834	 50.81	+1	3198832..3201606	+	924	88604156	-	Mhun_2923	-	leucyl-tRNA synthetase
2835	 45.40	0	3201610..3201924	-	104	88604157	-	Mhun_2924	-	hypothetical protein
2836	 45.23	0	3202156..3203088	+	310	88604158	-	Mhun_2925	-	Mg2+ transporter protein, CorA-like
2837	 39.12	-1	3203191..3203484	+	97	88604159	-	Mhun_2926	-	hypothetical protein
2838	 49.37	0	3203648..3204202	+	184	88604160	-	Mhun_2927	-	hypothetical protein
2839	 46.95	0	3204212..3204424	+	70	88604161	-	Mhun_2928	-	XRE family transcriptional regulator
2840	 49.70	0	3204465..3205130	+	221	88604162	-	Mhun_2929	-	hypothetical protein
2841	 49.18	0	3205127..3206287	+	386	88604163	-	Mhun_2930	-	hypothetical protein
2842	 53.28	+1	3206289..3206975	+	228	88604164	-	Mhun_2931	-	ABC transporter related
2843	 51.66	+1	3206972..3208144	+	390	88604165	-	Mhun_2932	-	hypothetical protein
2844	 48.41	0	3208159..3209133	-	324	88604166	-	Mhun_2933	-	GTP-binding protein, HSR1-related
2845	 44.36	0	3209301..3209708	+	135	88604167	-	Mhun_2934	-	tetratricopeptide TPR_2
2846	 42.59	0	3209822..3210037	-	71	88604168	-	Mhun_2935	-	phage shock protein C, PspC
2847	 48.92	0	3210427..3211305	+	292	88604169	-	Mhun_2936	-	signal transduction protein
2848	 47.88	0	3211316..3212305	+	329	88604170	-	Mhun_2937	-	DNA methylase N-4/N-6
2849	 48.02	0	3212365..3212616	+	83	88604171	-	Mhun_2938	-	PRC-barrel
2850	 49.64	0	3212598..3213296	-	232	88604172	-	Mhun_2939	-	SPP-like hydrolase
2851	 52.53	+1	3213332..3214555	-	407	88604173	radA	Mhun_2940	-	DNA repair and recombination protein RadA
2852	 53.80	+1	3214633..3215922	-	429	88604174	-	Mhun_2941	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2853	 53.52	+1	3215938..3217230	-	430	88604175	-	Mhun_2942	-	diaminopimelate decarboxylase
2854	 50.57	0	3217227..3218375	-	382	88604176	-	Mhun_2943	-	aminotransferase, class I and II
2855	 49.36	0	3218438..3220858	-	806	88604177	-	Mhun_2944	-	methyl-accepting chemotaxis sensory transducer
2856	 48.48	0	3221032..3221823	-	263	88604178	-	Mhun_2945	-	aminoglycoside phosphotransferase
2857	 49.12	0	3221920..3223224	-	434	88604179	-	Mhun_2946	-	hypothetical protein
2858	 39.90	-1	3223302..3225098	-	598	88604180	-	Mhun_2947	-	putative PAS/PAC sensor protein
2859	 46.11	0	3225144..3226442	-	432	88604181	-	Mhun_2948	-	methyl-accepting chemotaxis sensory transducer
2860	 50.38	0	3226884..3228203	-	439	88604182	-	Mhun_2950	-	PKD
2861	 36.69	-1	3228405..3228761	-	118	88604183	-	Mhun_2951	-	hypothetical protein
2862	 44.11	0	3228767..3229258	-	163	88604184	-	Mhun_2952	-	hypothetical protein
2863	 50.09	0	3230074..3230634	-	186	88604185	-	Mhun_2953	-	hypothetical protein
2864	 48.41	0	3230657..3231160	-	167	88604186	-	Mhun_2954	-	hypothetical protein
2865	 52.49	+1	3231378..3231779	-	133	88604187	-	Mhun_2955	-	hypothetical protein
2866	 50.08	0	3231949..3235137	-	1062	88604188	-	Mhun_2956	-	hypothetical protein
2867	 54.13	+1	3235127..3235477	-	116	88604189	-	Mhun_2957	-	hypothetical protein
2868	 46.54	0	3235470..3235946	-	158	88604190	-	Mhun_2958	-	hypothetical protein
2869	 47.58	0	3237010..3238806	+	598	88604191	-	Mhun_2961	-	hypothetical protein
2870	 42.89	0	3240595..3241902	+	435	88604192	-	Mhun_2963	-	ATPase
2871	 51.59	+1	3242078..3242548	+	156	88604193	-	Mhun_2964	-	methionine sulfoxide reductase B
2872	 47.01	0	3242556..3243608	-	350	88604194	-	Mhun_2965	-	histidine kinase
2873	 51.02	+1	3243619..3244155	-	178	88604195	-	Mhun_2966	-	4-vinyl reductase, 4VR
2874	 49.69	0	3244203..3245333	-	376	88604196	-	Mhun_2967	-	putative PAS/PAC sensor protein
2875	 45.90	0	3245402..3246841	-	479	88604197	-	Mhun_2968	-	putative PAS/PAC sensor protein
2876	 47.66	0	3247084..3247425	-	113	88604198	-	Mhun_2969	-	translation initiation factor IF-1A
2877	 48.32	0	3247591..3248691	+	366	88604199	-	Mhun_2970	-	hypothetical protein
2878	 49.65	0	3249134..3249556	+	140	88604200	-	Mhun_2972	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.