IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2704	 34.43	-2	3063432..3064163	-	243	88604026	-	Mhun_2791	-	TPR repeat-containing protein
2705	 37.24	-1	3064356..3065993	-	545	88604027	-	Mhun_2792	-	transposase
2706	 45.88	0	3066165..3066977	-	270	88604028	-	Mhun_2793	-	DNA polymerase, beta-like region
2707	 49.34	0	3067005..3067835	-	276	88604029	-	Mhun_2794	-	hypothetical protein
2708	 53.37	+1	3068473..3068991	+	172	88604030	-	Mhun_2795	-	hypothetical protein
2709	 51.70	+1	3068986..3069513	-	175	88604031	-	Mhun_2796	-	metal dependent phosphohydrolase
2710	 42.91	0	3069506..3070027	-	173	88604032	-	Mhun_2797	-	transcription factor TFIIE, alpha subunit
2711	 54.50	+1	3070027..3071127	-	366	88604033	-	Mhun_2798	-	hypothetical protein
2712	 53.68	+1	3071100..3071615	-	171	88604034	-	Mhun_2799	-	hypothetical protein
2713	 48.11	0	3071612..3071929	-	105	88604035	-	Mhun_2800	-	hypothetical protein
2714	 52.80	+1	3072008..3072757	+	249	88604036	-	Mhun_2801	-	hypothetical protein
2715	 50.37	0	3072819..3073223	+	134	88604037	-	Mhun_2802	-	hypothetical protein
2716	 51.75	+1	3073228..3075198	-	656	88604038	-	Mhun_2803	-	sodium/hydrogen exchanger
2717	 53.75	+1	3075267..3076187	+	306	88604039	-	Mhun_2804	-	ROK
2718	 49.19	0	3076236..3078158	+	640	88604040	-	Mhun_2805	-	clostripain
2719	 50.46	0	3078313..3079392	+	359	88604041	-	Mhun_2806	-	clostripain
2720	 49.45	0	3079376..3081106	-	576	88604042	-	Mhun_2807	-	tetratricopeptide TPR_2
2721	 50.47	0	3081152..3082534	-	460	88604043	-	Mhun_2808	-	tRNA adenylyltransferase
2722	 51.63	+1	3082531..3083082	-	183	88604044	-	Mhun_2809	-	2',5' RNA ligase
2723	 48.63	0	3083214..3083468	+	84	88604045	-	Mhun_2810	-	glutaredoxin-like protein
2724	 51.66	+1	3083477..3085675	+	732	88604046	-	Mhun_2811	-	ribonucleoside-triphosphate reductase, anaerobic
2725	 48.10	0	3085811..3086311	-	166	88604047	-	Mhun_2812	-	hypothetical protein
2726	 49.73	0	3086439..3087938	+	499	88604048	-	Mhun_2813	-	beta-lactamase
2727	 49.52	0	3088035..3088664	+	209	88604049	-	Mhun_2814	-	UbiE/COQ5 methyltransferase
2728	 41.28	0	3091255..3092097	+	280	88604050	-	Mhun_2816	-	hypothetical protein
2729	 43.05	0	3092091..3092759	+	222	88604051	-	Mhun_2817	-	hypothetical protein
2730	 39.71	-1	3093287..3094807	-	506	88604052	-	Mhun_2819	-	transposase IS66
2731	 35.76	-1	3094797..3094961	-	54	88604053	-	Mhun_2820	-	transposon-encoded protein
2732	 33.85	-2	3095281..3096639	-	452	88604054	-	Mhun_2821	-	transposase, IS4
2733	 44.07	0	3097477..3099180	-	567	88604055	-	Mhun_2822	-	spore coat assembly protein-like
2734	 47.65	0	3100399..3101376	+	325	88604056	-	Mhun_2823	-	phosphoesterase, DHHA1
2735	 49.10	0	3101363..3102136	-	257	88604057	-	Mhun_2824	-	hypothetical protein
2736	 50.02	0	3102191..3104263	+	690	88604058	metG	Mhun_2825	-	methionyl-tRNA synthetase
2737	 49.58	0	3104286..3104759	-	157	88604059	-	Mhun_2826	-	HEAT repeat-containing PBS lyase
2738	 49.31	0	3104859..3105728	-	289	88604060	-	Mhun_2827	-	hypothetical protein
2739	 49.86	0	3105910..3108105	-	731	88604061	-	Mhun_2828	-	elongation factor EF-2
2740	 50.94	+1	3108148..3108732	-	194	88604062	-	Mhun_2829	-	30S ribosomal protein S7P
2741	 52.21	+1	3108738..3109166	-	142	88604063	rps12P	Mhun_2830	-	30S ribosomal protein S12P
2742	 49.52	0	3109324..3109737	+	137	88604064	-	Mhun_2831	-	putative 6-pyruvoyl tetrahydropterin synthase
2743	 46.24	0	3109628..3110332	+	234	88604065	-	Mhun_2832	-	radical SAM family protein
2744	 50.08	0	3110334..3110996	+	220	88604066	-	Mhun_2833	-	ExsB
2745	 50.78	0	3111000..3111509	+	169	88604067	-	Mhun_2834	-	NUDIX hydrolase
2746	 50.06	0	3111502..3112380	+	292	88604068	-	Mhun_2835	-	hypothetical protein
2747	 47.25	0	3112457..3113728	+	423	88604069	-	Mhun_2836	-	peptide chain release factor 1
2748	 50.42	0	3113728..3115395	+	555	88604070	argS	Mhun_2837	-	arginyl-tRNA synthetase
2749	 50.92	+1	3115376..3116296	+	306	88604071	-	Mhun_2838	-	tRNA-modifying enzyme
2750	 49.87	0	3116293..3117888	+	531	88604072	-	Mhun_2839	-	O-phosphoseryl-tRNA synthetase
2751	 52.52	+1	3118100..3120991	+	963	88604073	-	Mhun_2840	-	PKD
2752	 31.31	-2	3121635..3122423	-	262	88604074	-	Mhun_2841	-	hypothetical protein
2753	 36.35	-1	3122571..3123167	+	198	88604075	-	Mhun_2842	-	hypothetical protein
2754	 40.86	0	3123254..3124981	+	575	88604076	-	Mhun_2843	-	hypothetical protein
2755	 38.91	-1	3125461..3126159	+	232	88604077	-	Mhun_2844	-	AsnC family transcriptional regulator
2756	 35.63	-2	3126278..3126538	+	86	88604078	-	Mhun_2845	-	hypothetical protein
2757	 26.20	-2	3128201..3128719	+	172	88604079	-	Mhun_2846	-	hypothetical protein
2758	 26.20	-2	3130169..3130687	+	172	88604080	-	Mhun_2847	-	hypothetical protein
2759	 49.61	0	3131046..3131819	+	257	88604081	-	Mhun_2848	-	HAD family hydrolase
2760	 48.38	0	3131898..3133007	+	369	88604082	-	Mhun_2849	-	SufBD
2761	 53.00	+1	3133008..3133658	+	216	88604083	-	Mhun_2850	-	protein-L-isoaspartate O-methyltransferase
2762	 47.07	0	3133640..3134287	+	215	88604084	-	Mhun_2851	-	hypothetical protein
2763	 52.06	+1	3134299..3135558	+	419	88604085	-	Mhun_2852	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
2764	 49.67	0	3135555..3136760	+	401	88604086	-	Mhun_2853	-	nucleotidyl transferase
2765	 50.39	0	3136757..3137923	+	388	88604087	-	Mhun_2854	-	nucleotidyl transferase
2766	 49.02	0	3137925..3139664	+	579	88604088	-	Mhun_2855	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
2767	 47.56	0	3139661..3140827	+	388	88604089	-	Mhun_2856	-	glycosyl transferase, group 1
2768	 45.67	0	3140824..3141942	+	372	88604090	-	Mhun_2857	-	glycosyl transferase, group 1
2769	 46.57	0	3141939..3143192	+	417	88604091	-	Mhun_2858	-	NAD-dependent epimerase/dehydratase
2770	 47.72	0	3143197..3145761	+	854	88604092	-	Mhun_2859	-	oligosaccharyl transferase, STT3 subunit
2771	 52.04	+1	3145786..3146079	+	97	88604093	-	Mhun_2860	-	hypothetical protein
2772	 51.46	+1	3146205..3147440	+	411	88604094	-	Mhun_2861	-	translation initiation factor IF-2 subunit gamma
2773	 48.41	0	3147437..3147814	+	125	88604095	-	Mhun_2862	-	nucleotide binding protein, PINc
2774	 48.69	0	3147819..3148391	+	190	88604096	-	Mhun_2863	-	DNA-directed RNA polymerase subunit E'
2775	 53.43	+1	3148394..3148597	+	67	88604097	-	Mhun_2864	-	DNA-directed RNA polymerase subunit E, RpoE2
2776	 49.90	0	3148597..3149115	+	172	88604098	-	Mhun_2865	-	hypothetical protein
2777	 50.74	0	3149139..3149477	+	112	88604099	-	Mhun_2866	-	ribosomal protein S24e
2778	 47.09	0	3149493..3149681	+	62	88604100	-	Mhun_2867	-	ribosomal protein S27a
2779	 52.46	+1	3149687..3151249	+	520	88604101	-	Mhun_2868	-	O-sialoglycoprotein endopeptidase/protein kinase
2780	 52.93	+1	3151246..3151791	+	181	88604102	-	Mhun_2869	-	Ham1-like protein
2781	 50.34	0	3151854..3152000	+	48	88604103	rpl40e	Mhun_2870	-	50S ribosomal protein L40e
2782	 46.39	0	3152005..3152655	-	216	88604104	-	Mhun_2871	-	hypothetical protein
2783	 46.41	0	3152701..3153174	-	157	88604105	-	Mhun_2872	-	hypothetical protein
2784	 49.49	0	3153227..3154414	-	395	88604106	-	Mhun_2873	-	major facilitator transporter
2785	 46.84	0	3154524..3155219	+	231	88604107	-	Mhun_2874	-	HAD family hydrolase
2786	 46.37	0	3155222..3157345	-	707	88604108	-	Mhun_2875	-	putative PAS/PAC sensor protein
2787	 42.86	0	3157582..3160374	+	930	88604109	-	Mhun_2876	-	multi-sensor signal transduction histidine kinase
2788	 41.51	0	3160358..3160822	+	154	88604110	-	Mhun_2877	-	response regulator receiver domain-containing protein
2789	 48.43	0	3160839..3161381	-	180	88604111	-	Mhun_2878	-	hypothetical protein
2790	 47.24	0	3161399..3161779	-	126	88604112	-	Mhun_2879	-	response regulator receiver domain-containing protein
2791	 48.26	0	3161855..3163006	+	383	88604113	-	Mhun_2880	-	radical SAM family protein
2792	 50.00	0	3163070..3163927	+	285	88604114	-	Mhun_2881	-	beta-lactamase-like
2793	 49.45	0	3163940..3165583	+	547	88604115	-	Mhun_2882	-	DNA ligase I, ATP-dependent (dnl1)
2794	 49.37	0	3165773..3166171	+	132	88604116	-	Mhun_2883	-	S-adenosylmethionine decarboxylase related
2795	 48.58	0	3166177..3167055	+	292	88604117	-	Mhun_2884	-	spermidine synthase
2796	 51.66	+1	3167068..3168753	-	561	88604118	gltX	Mhun_2885	-	glutamyl-tRNA synthetase
2797	 49.74	0	3168753..3169715	-	320	88604119	-	Mhun_2886	-	farnesyltranstransferase
2798	 47.16	0	3169730..3171067	-	445	88604120	-	Mhun_2887	-	beta-lactamase-like
2799	 51.56	+1	3171057..3172148	-	363	88604121	-	Mhun_2888	-	isopentenyl pyrophosphate isomerase
2800	 50.06	0	3172145..3172915	-	256	88604122	-	Mhun_2889	-	aspartate/glutamate/uridylate kinase
2801	 49.31	0	3172908..3173777	-	289	88604123	-	Mhun_2890	-	mevalonate kinase
2802	 49.06	0	3173777..3174571	-	264	88604124	-	Mhun_2891	-	hypothetical protein
2803	 50.57	0	3174636..3175244	-	202	88604125	rps2P	Mhun_2892	-	30S ribosomal protein S2
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.